ras-commander 0.64.0__py3-none-any.whl → 0.66.0__py3-none-any.whl

ras_commander/RasPlan.py

@@ -1,1472 +1,1488 @@
-"""
-RasPlan - Operations for handling plan files in HEC-RAS projects
-
-This module is part of the ras-commander library and uses a centralized logging configuration.
-
-Logging Configuration:
-- The logging is set up in the logging_config.py file.
-- A @log_call decorator is available to automatically log function calls.
-- Log levels: DEBUG, INFO, WARNING, ERROR, CRITICAL
-- Logs are written to both console and a rotating file handler.
-- The default log file is 'ras_commander.log' in the 'logs' directory.
-- The default log level is INFO.
-
-To use logging in this module:
-1. Use the @log_call decorator for automatic function call logging.
-2. For additional logging, use logger.[level]() calls (e.g., logger.info(), logger.debug()).
-3. Obtain the logger using: logger = logging.getLogger(__name__)
-
-Example:
-    @log_call
-    def my_function():
-        logger = logging.getLogger(__name__)
-        logger.debug("Additional debug information")
-        # Function logic here
-        
-        
------
-
-All of the methods in this class are static and are designed to be used without instantiation.
-
-List of Functions in RasPlan:
-- set_geom(): Set the geometry for a specified plan
-- set_steady(): Apply a steady flow file to a plan file
-- set_unsteady(): Apply an unsteady flow file to a plan file
-- set_num_cores(): Update the maximum number of cores to use
-- set_geom_preprocessor(): Update geometry preprocessor settings
-- clone_plan(): Create a new plan file based on a template
-- clone_unsteady(): Copy unsteady flow files from a template
-- clone_steady(): Copy steady flow files from a template
-- clone_geom(): Copy geometry files from a template
-- get_next_number(): Determine the next available number from a list
-- get_plan_value(): Retrieve a specific value from a plan file
-- get_results_path(): Get the results file path for a plan
-- get_plan_path(): Get the full path for a plan number
-- get_flow_path(): Get the full path for a flow number
-- get_unsteady_path(): Get the full path for an unsteady number
-- get_geom_path(): Get the full path for a geometry number
-- update_run_flags(): Update various run flags in a plan file
-- update_plan_intervals(): Update computation and output intervals
-- update_plan_description(): Update the description in a plan file
-- read_plan_description(): Read the description from a plan file
-- update_simulation_date(): Update simulation start and end dates
-- get_shortid(): Get the Short Identifier from a plan file
-- set_shortid(): Set the Short Identifier in a plan file
-- get_plan_title(): Get the Plan Title from a plan file 
-- set_plan_title(): Set the Plan Title in a plan file
-
-        
-"""
-import os
-import re
-import logging
-from pathlib import Path
-import shutil
-from typing import Union, Optional
-import pandas as pd
-from .RasPrj import RasPrj, ras
-from .RasUtils import RasUtils
-from pathlib import Path
-from typing import Union, Any
-from datetime import datetime
-
-import logging
-import re
-from .LoggingConfig import get_logger
-from .Decorators import log_call
-
-logger = get_logger(__name__)
-
-class RasPlan:
-    """
-    A class for operations on HEC-RAS plan files.
-    """
-    
-    @staticmethod
-    @log_call
-    def set_geom(plan_number: Union[str, int], new_geom: Union[str, int], ras_object=None) -> pd.DataFrame:
-        """
-        Set the geometry for the specified plan.
-
-        Parameters:
-            plan_number (Union[str, int]): The plan number to update.
-            new_geom (Union[str, int]): The new geometry number to set.
-            ras_object: An optional RAS object instance.
-
-        Returns:
-            pd.DataFrame: The updated geometry DataFrame.
-
-        Example:
-            updated_geom_df = RasPlan.set_geom('02', '03')
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Ensure plan_number and new_geom are strings
-        plan_number = str(plan_number).zfill(2)
-        new_geom = str(new_geom).zfill(2)
-
-        # Before doing anything, make sure the plan, geom, flow, and unsteady dataframes are current
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-        
-        if new_geom not in ras_obj.geom_df['geom_number'].values:
-            logger.error(f"Geometry {new_geom} not found in project.")
-            raise ValueError(f"Geometry {new_geom} not found in project.")
-
-        # Update the geometry for the specified plan
-        ras_obj.plan_df.loc[ras_obj.plan_df['plan_number'] == plan_number, 'geom_number'] = new_geom
-
-        logger.info(f"Geometry for plan {plan_number} set to {new_geom}")
-        logger.debug("Updated plan DataFrame:")
-        logger.debug(ras_obj.plan_df)
-
-        # Update the project file
-        prj_file_path = ras_obj.prj_file
-        RasUtils.update_file(prj_file_path, RasPlan._update_geom_in_file, plan_number, new_geom)
-
-        # Re-initialize the ras object to reflect changes
-        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
-
-        return ras_obj.plan_df
-
-    @staticmethod
-    def _update_geom_in_file(lines, plan_number, new_geom):
-        plan_pattern = re.compile(rf"^Plan File=p{plan_number}", re.IGNORECASE)
-        geom_pattern = re.compile(r"^Geom File=g\d+", re.IGNORECASE)
-        
-        for i, line in enumerate(lines):
-            if plan_pattern.match(line):
-                for j in range(i+1, len(lines)):
-                    if geom_pattern.match(lines[j]):
-                        lines[j] = f"Geom File=g{new_geom}\n"
-                        logger.info(f"Updated Geom File in project file to g{new_geom} for plan {plan_number}")
-                        break
-                break
-        return lines
-
-    @staticmethod
-    @log_call
-    def set_steady(plan_number: str, new_steady_flow_number: str, ras_object=None):
-        """
-        Apply a steady flow file to a plan file.
-        
-        Parameters:
-        plan_number (str): Plan number (e.g., '02')
-        new_steady_flow_number (str): Steady flow number to apply (e.g., '01')
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        None
-
-        Raises:
-        ValueError: If the specified steady flow number is not found in the project file
-        FileNotFoundError: If the specified plan file is not found
-
-        Example:
-        >>> RasPlan.set_steady('02', '01')
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-                        
-        # Update the flow dataframe in the ras instance to ensure it is current
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        
-        if new_steady_flow_number not in ras_obj.flow_df['flow_number'].values:
-            raise ValueError(f"Steady flow number {new_steady_flow_number} not found in project file.")
-        
-        # Resolve the full path of the plan file
-        plan_file_path = RasPlan.get_plan_path(plan_number, ras_obj)
-        if not plan_file_path:
-            raise FileNotFoundError(f"Plan file not found: {plan_number}")
-        
-        RasUtils.update_file(plan_file_path, RasPlan._update_steady_in_file, new_steady_flow_number)
-
-        # Update the ras object's dataframes
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-    @staticmethod
-    def _update_steady_in_file(lines, new_steady_flow_number):
-        return [f"Flow File=f{new_steady_flow_number}\n" if line.startswith("Flow File=f") else line for line in lines]
-
-    @staticmethod
-    @log_call
-    def set_unsteady(plan_number: str, new_unsteady_flow_number: str, ras_object=None):
-        """
-        Apply an unsteady flow file to a plan file.
-        
-        Parameters:
-        plan_number (str): Plan number (e.g., '04')
-        new_unsteady_flow_number (str): Unsteady flow number to apply (e.g., '01')
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        None
-
-        Raises:
-        ValueError: If the specified unsteady number is not found in the project file
-        FileNotFoundError: If the specified plan file is not found
-
-        Example:
-        >>> RasPlan.set_unsteady('04', '01')
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Update the unsteady dataframe in the ras instance to ensure it is current
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-        
-        if new_unsteady_flow_number not in ras_obj.unsteady_df['unsteady_number'].values:
-            raise ValueError(f"Unsteady number {new_unsteady_flow_number} not found in project file.")
-        
-        # Get the full path of the plan file
-        plan_file_path = RasPlan.get_plan_path(plan_number, ras_obj)
-        if not plan_file_path:
-            raise FileNotFoundError(f"Plan file not found: {plan_number}")
-        
-        def update_unsteady_in_file(lines):
-            updated_lines = []
-            for line in lines:
-                if line.startswith("Flow File="):
-                    updated_lines.append(f"Flow File=u{new_unsteady_flow_number}\n")
-                else:
-                    updated_lines.append(line)
-            return updated_lines
-        
-        try:
-            RasUtils.update_file(plan_file_path, update_unsteady_in_file)
-        except Exception as e:
-            raise Exception(f"Failed to update unsteady flow file: {e}")
-
-        # Update the ras object's dataframes
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-    @staticmethod
-    @log_call
-    def set_num_cores(plan_number, num_cores, ras_object=None):
-        """
-        Update the maximum number of cores to use in the HEC-RAS plan file.
-        
-        Parameters:
-        plan_number (str): Plan number (e.g., '02') or full path to the plan file
-        num_cores (int): Maximum number of cores to use
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        None
-
-        Number of cores is controlled by the following parameters in the plan file corresponding to 1D, 2D, Pipe Systems and Pump Stations:
-        UNET D1 Cores=  
-        UNET D2 Cores=
-        PS Cores=
-
-        Where a value of "0" is used for "All Available" cores, and values of 1 or more are used to specify the number of cores to use.
-        For complex 1D/2D models with pipe systems, a more complex approach may be needed to optimize performance.  (Suggest writing a custom function based on this code).
-        This function simply sets the "num_cores" parameter for ALL instances of the above parameters in the plan file.
-
-
-        Notes on setting num_cores in HEC-RAS:
-        The recommended setting for num_cores is 2 (most efficient) to 8 (most performant)
-        More details in the HEC-Commander Repository Blog "Benchmarking is All You Need"
-        https://github.com/billk-FM/HEC-Commander/blob/main/Blog/7._Benchmarking_Is_All_You_Need.md
-        
-        Microsoft Windows has a maximum of 64 cores that can be allocated to a single Ras.exe process. 
-
-        Example:
-        >>> # Using plan number
-        >>> RasPlan.set_num_cores('02', 4)
-        >>> # Using full path to plan file
-        >>> RasPlan.set_num_cores('/path/to/project.p02', 4)
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        plan_file_path = RasUtils.get_plan_path(plan_number, ras_obj)
-        if not plan_file_path:
-            raise FileNotFoundError(f"Plan file not found: {plan_number}. Please provide a valid plan number or path.")
-        
-        def update_num_cores(lines):
-            updated_lines = []
-            for line in lines:
-                if any(param in line for param in ["UNET D1 Cores=", "UNET D2 Cores=", "PS Cores="]):
-                    param_name = line.split("=")[0]
-                    updated_lines.append(f"{param_name}= {num_cores}\n")
-                else:
-                    updated_lines.append(line)
-            return updated_lines
-        
-        try:
-            RasUtils.update_file(plan_file_path, update_num_cores)
-        except Exception as e:
-            raise IOError(f"Failed to update number of cores in plan file: {e}")
-        
-        # Update the ras object's dataframes
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-    @staticmethod
-    @log_call
-    def set_geom_preprocessor(file_path, run_htab, use_ib_tables, ras_object=None):
-        """
-        Update the simulation plan file to modify the `Run HTab` and `UNET Use Existing IB Tables` settings.
-        
-        Parameters:
-        file_path (str): Path to the simulation plan file (.p06 or similar) that you want to modify.
-        run_htab (int): Value for the `Run HTab` setting:
-            - `0` : Do not run the geometry preprocessor, use existing geometry tables.
-            - `-1` : Run the geometry preprocessor, forcing a recomputation of the geometry tables.
-        use_ib_tables (int): Value for the `UNET Use Existing IB Tables` setting:
-            - `0` : Use existing interpolation/boundary (IB) tables without recomputing them.
-            - `-1` : Do not use existing IB tables, force a recomputation.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        None
-
-        Raises:
-        ValueError: If `run_htab` or `use_ib_tables` are not integers or not within the accepted values (`0` or `-1`).
-        FileNotFoundError: If the specified file does not exist.
-        IOError: If there is an error reading or writing the file.
-
-        Example:
-        >>> RasPlan.set_geom_preprocessor('/path/to/project.p06', run_htab=-1, use_ib_tables=0)
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        if run_htab not in [-1, 0]:
-            raise ValueError("Invalid value for `Run HTab`. Expected `0` or `-1`.")
-        if use_ib_tables not in [-1, 0]:
-            raise ValueError("Invalid value for `UNET Use Existing IB Tables`. Expected `0` or `-1`.")
-        
-        def update_geom_preprocessor(lines, run_htab, use_ib_tables):
-            updated_lines = []
-            for line in lines:
-                if line.lstrip().startswith("Run HTab="):
-                    updated_lines.append(f"Run HTab= {run_htab} \n")
-                elif line.lstrip().startswith("UNET Use Existing IB Tables="):
-                    updated_lines.append(f"UNET Use Existing IB Tables= {use_ib_tables} \n")
-                else:
-                    updated_lines.append(line)
-            return updated_lines
-        
-        try:
-            RasUtils.update_file(file_path, update_geom_preprocessor, run_htab, use_ib_tables)
-        except FileNotFoundError:
-            raise FileNotFoundError(f"The file '{file_path}' does not exist.")
-        except IOError as e:
-            raise IOError(f"An error occurred while reading or writing the file: {e}")
-
-        # Update the ras object's dataframes
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-    @staticmethod
-    @log_call
-    def get_results_path(plan_number: str, ras_object=None) -> Optional[str]:
-        """
-        Retrieve the results file path for a given HEC-RAS plan number.
-
-        Args:
-            plan_number (str): The HEC-RAS plan number for which to find the results path.
-            ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-            Optional[str]: The full path to the results file if found and the file exists, or None if not found.
-
-        Raises:
-            RuntimeError: If the project is not initialized.
-
-        Example:
-            >>> ras_plan = RasPlan()
-            >>> results_path = ras_plan.get_results_path('01')
-            >>> if results_path:
-            ...     print(f"Results file found at: {results_path}")
-            ... else:
-            ...     print("Results file not found.")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Update the plan dataframe in the ras instance to ensure it is current
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        
-        # Ensure plan_number is a string
-        plan_number = str(plan_number).zfill(2)
-        
-        plan_entry = ras_obj.plan_df[ras_obj.plan_df['plan_number'] == plan_number]
-        if not plan_entry.empty:
-            results_path = plan_entry['HDF_Results_Path'].iloc[0]
-            if results_path and Path(results_path).exists():
-                return results_path
-            else:
-                return None
-        else:
-            return None
-
-    @staticmethod
-    @log_call
-    def get_plan_path(plan_number: str, ras_object=None) -> Optional[str]:
-        """
-        Return the full path for a given plan number.
-        
-        This method ensures that the latest plan entries are included by refreshing
-        the plan dataframe before searching for the requested plan number.
-        
-        Args:
-        plan_number (str): The plan number to search for.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        Optional[str]: The full path of the plan file if found, None otherwise.
-        
-        Raises:
-        RuntimeError: If the project is not initialized.
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> plan_path = ras_plan.get_plan_path('01')
-        >>> if plan_path:
-        ...     print(f"Plan file found at: {plan_path}")
-        ... else:
-        ...     print("Plan file not found.")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Use updated plan dataframe
-        plan_df = ras_obj.get_plan_entries()
-        
-        plan_path = plan_df[plan_df['plan_number'] == plan_number]
-        
-        if not plan_path.empty:
-            full_path = plan_path['full_path'].iloc[0]
-            return full_path
-        else:
-            return None
-
-    @staticmethod
-    @log_call
-    def get_flow_path(flow_number: str, ras_object=None) -> Optional[str]:
-        """
-        Return the full path for a given flow number.
-
-        Args:
-        flow_number (str): The flow number to search for.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-        Optional[str]: The full path of the flow file if found, None otherwise.
-
-        Raises:
-        RuntimeError: If the project is not initialized.
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> flow_path = ras_plan.get_flow_path('01')
-        >>> if flow_path:
-        ...     print(f"Flow file found at: {flow_path}")
-        ... else:
-        ...     print("Flow file not found.")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Use updated flow dataframe
-        ras_obj.flow_df = ras_obj.get_prj_entries('Flow')
-        
-        flow_path = ras_obj.flow_df[ras_obj.flow_df['flow_number'] == flow_number]
-        if not flow_path.empty:
-            full_path = flow_path['full_path'].iloc[0]
-            return full_path
-        else:
-            return None
-
-    @staticmethod
-    @log_call
-    def get_unsteady_path(unsteady_number: str, ras_object=None) -> Optional[str]:
-        """
-        Return the full path for a given unsteady number.
-
-        Args:
-        unsteady_number (str): The unsteady number to search for.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-        Optional[str]: The full path of the unsteady file if found, None otherwise.
-
-        Raises:
-        RuntimeError: If the project is not initialized.
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> unsteady_path = ras_plan.get_unsteady_path('01')
-        >>> if unsteady_path:
-        ...     print(f"Unsteady file found at: {unsteady_path}")
-        ... else:
-        ...     print("Unsteady file not found.")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Use updated unsteady dataframe
-        ras_obj.unsteady_df = ras_obj.get_prj_entries('Unsteady')
-        
-        unsteady_path = ras_obj.unsteady_df[ras_obj.unsteady_df['unsteady_number'] == unsteady_number]
-        if not unsteady_path.empty:
-            full_path = unsteady_path['full_path'].iloc[0]
-            return full_path
-        else:
-            return None
-
-    @staticmethod
-    @log_call
-    def get_geom_path(geom_number: str, ras_object=None) -> Optional[str]:
-        """
-        Return the full path for a given geometry number.
-
-        Args:
-        geom_number (str): The geometry number to search for.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-        Optional[str]: The full path of the geometry file if found, None otherwise.
-
-        Raises:
-        RuntimeError: If the project is not initialized.
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> geom_path = ras_plan.get_geom_path('01')
-        >>> if geom_path:
-        ...     print(f"Geometry file found at: {geom_path}")
-        ... else:
-        ...     print("Geometry file not found.")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-        
-        # Use updated geom dataframe
-        ras_obj.geom_df = ras_obj.get_prj_entries('Geom')
-        
-        geom_path = ras_obj.geom_df[ras_obj.geom_df['geom_number'] == geom_number]
-        if not geom_path.empty:
-            full_path = geom_path['full_path'].iloc[0]
-            return full_path
-        else:
-            return None
-
-    # Clone Functions to copy unsteady, flow, and geometry files from templates
-
-    @staticmethod
-    @log_call
-    def clone_plan(template_plan, new_plan_shortid=None, ras_object=None):
-        """
-        Create a new plan file based on a template and update the project file.
-        
-        Parameters:
-        template_plan (str): Plan number to use as template (e.g., '01')
-        new_plan_shortid (str, optional): New short identifier for the plan file
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        str: New plan number
-        
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> new_plan_number = ras_plan.clone_plan('01', new_plan_shortid='New Plan')
-        >>> print(f"New plan created with number: {new_plan_number}")
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Update plan entries without reinitializing the entire project
-        ras_obj.plan_df = ras_obj.get_prj_entries('Plan')
-
-        new_plan_num = RasPlan.get_next_number(ras_obj.plan_df['plan_number'])
-        template_plan_path = ras_obj.project_folder / f"{ras_obj.project_name}.p{template_plan}"
-        new_plan_path = ras_obj.project_folder / f"{ras_obj.project_name}.p{new_plan_num}"
-
-        def update_shortid(lines):
-            shortid_pattern = re.compile(r'^Short Identifier=(.*)$', re.IGNORECASE)
-            for i, line in enumerate(lines):
-                match = shortid_pattern.match(line.strip())
-                if match:
-                    current_shortid = match.group(1)
-                    if new_plan_shortid is None:
-                        new_shortid = (current_shortid + "_copy")[:24]
-                    else:
-                        new_shortid = new_plan_shortid[:24]
-                    lines[i] = f"Short Identifier={new_shortid}\n"
-                    break
-            return lines
-
-        # Use RasUtils to clone the file and update the short identifier
-        RasUtils.clone_file(template_plan_path, new_plan_path, update_shortid)
-
-        # Use RasUtils to update the project file
-        RasUtils.update_project_file(ras_obj.prj_file, 'Plan', new_plan_num, ras_object=ras_obj)
-
-        # Re-initialize the ras global object
-        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
-
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-        return new_plan_num
-
-    @staticmethod
-    @log_call
-    def clone_unsteady(template_unsteady, ras_object=None):
-        """
-        Copy unsteady flow files from a template, find the next unsteady number,
-        and update the project file accordingly.
-
-        Parameters:
-        template_unsteady (str): Unsteady flow number to be used as a template (e.g., '01')
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-        str: New unsteady flow number (e.g., '03')
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> new_unsteady_num = ras_plan.clone_unsteady('01')
-        >>> print(f"New unsteady flow file created: u{new_unsteady_num}")
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Update unsteady entries without reinitializing the entire project
-        ras_obj.unsteady_df = ras_obj.get_prj_entries('Unsteady')
-
-        new_unsteady_num = RasPlan.get_next_number(ras_obj.unsteady_df['unsteady_number'])
-        template_unsteady_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{template_unsteady}"
-        new_unsteady_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{new_unsteady_num}"
-
-        # Use RasUtils to clone the file
-        RasUtils.clone_file(template_unsteady_path, new_unsteady_path)
-
-        # Copy the corresponding .hdf file if it exists
-        template_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{template_unsteady}.hdf"
-        new_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{new_unsteady_num}.hdf"
-        if template_hdf_path.exists():
-            shutil.copy(template_hdf_path, new_hdf_path)
-
-        # Use RasUtils to update the project file
-        RasUtils.update_project_file(ras_obj.prj_file, 'Unsteady', new_unsteady_num, ras_object=ras_obj)
-
-        # Re-initialize the ras global object
-        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
-
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-        return new_unsteady_num
-
-
-    @staticmethod
-    @log_call
-    def clone_steady(template_flow, ras_object=None):
-        """
-        Copy steady flow files from a template, find the next flow number,
-        and update the project file accordingly.
-        
-        Parameters:
-        template_flow (str): Flow number to be used as a template (e.g., '01')
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        str: New flow number (e.g., '03')
-
-        Example:
-        >>> ras_plan = RasPlan()
-        >>> new_flow_num = ras_plan.clone_steady('01')
-        >>> print(f"New steady flow file created: f{new_flow_num}")
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Update flow entries without reinitializing the entire project
-        ras_obj.flow_df = ras_obj.get_prj_entries('Flow')
-
-        new_flow_num = RasPlan.get_next_number(ras_obj.flow_df['flow_number'])
-        template_flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.f{template_flow}"
-        new_flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.f{new_flow_num}"
-
-        # Use RasUtils to clone the file
-        RasUtils.clone_file(template_flow_path, new_flow_path)
-
-        # Use RasUtils to update the project file
-        RasUtils.update_project_file(ras_obj.prj_file, 'Flow', new_flow_num, ras_object=ras_obj)
-
-        # Re-initialize the ras global object
-        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
-        
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-        
-        return new_flow_num
-
-    @staticmethod
-    @log_call
-    def clone_geom(template_geom, ras_object=None):
-        """
-        Copy geometry files from a template, find the next geometry number,
-        and update the project file accordingly.
-        
-        Parameters:
-        template_geom (str): Geometry number to be used as a template (e.g., '01')
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-        
-        Returns:
-        str: New geometry number (e.g., '03')
-
-        Note:
-            This function updates the ras object's dataframes after modifying the project structure.
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Update geometry entries without reinitializing the entire project
-        ras_obj.geom_df = ras_obj.get_prj_entries('Geom')
-
-        new_geom_num = RasPlan.get_next_number(ras_obj.geom_df['geom_number'])
-        template_geom_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{template_geom}"
-        new_geom_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{new_geom_num}"
-
-        # Use RasUtils to clone the file
-        RasUtils.clone_file(template_geom_path, new_geom_path)
-
-        # Handle HDF file copy
-        template_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{template_geom}.hdf"
-        new_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{new_geom_num}.hdf"
-        if template_hdf_path.is_file():
-            RasUtils.clone_file(template_hdf_path, new_hdf_path)
-
-        # Use RasUtils to update the project file
-        RasUtils.update_project_file(ras_obj.prj_file, 'Geom', new_geom_num, ras_object=ras_obj)
-
-        # Update all dataframes in the ras object
-        ras_obj.plan_df = ras_obj.get_plan_entries()
-        ras_obj.geom_df = ras_obj.get_geom_entries()
-        ras_obj.flow_df = ras_obj.get_flow_entries()
-        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
-
-        return new_geom_num
-
-    @staticmethod
-    @log_call
-    def get_next_number(existing_numbers):
-        """
-        Determine the next available number from a list of existing numbers.
-        
-        Parameters:
-        existing_numbers (list): List of existing numbers as strings
-        
-        Returns:
-        str: Next available number as a zero-padded string
-        
-        Example:
-        >>> existing_numbers = ['01', '02', '04']
-        >>> RasPlan.get_next_number(existing_numbers)
-        '03'
-        >>> existing_numbers = ['01', '02', '03']
-        >>> RasPlan.get_next_number(existing_numbers)
-        '04'
-        """
-        existing_numbers = sorted(int(num) for num in existing_numbers)
-        next_number = 1
-        for num in existing_numbers:
-            if num == next_number:
-                next_number += 1
-            else:
-                break
-        return f"{next_number:02d}"
-
-    @staticmethod
-    @log_call
-    def get_plan_value(
-        plan_number_or_path: Union[str, Path],
-        key: str,
-        ras_object=None
-    ) -> Any:
-        """
-        Retrieve a specific value from a HEC-RAS plan file.
-
-        Parameters:
-        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
-        key (str): The key to retrieve from the plan file
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Returns:
-        Any: The value associated with the specified key
-
-        Raises:
-        ValueError: If the plan file is not found
-        IOError: If there's an error reading the plan file
-
-        Available keys and their expected types:
-        - 'Computation Interval' (str): Time value for computational time step (e.g., '5SEC', '2MIN')
-        - 'DSS File' (str): Name of the DSS file used
-        - 'Flow File' (str): Name of the flow input file
-        - 'Friction Slope Method' (int): Method selection for friction slope (e.g., 1, 2)
-        - 'Geom File' (str): Name of the geometry input file
-        - 'Mapping Interval' (str): Time interval for mapping output
-        - 'Plan File' (str): Name of the plan file
-        - 'Plan Title' (str): Title of the simulation plan
-        - 'Program Version' (str): Version number of HEC-RAS
-        - 'Run HTab' (int): Flag to run HTab module (-1 or 1)
-        - 'Run Post Process' (int): Flag to run post-processing (-1 or 1)
-        - 'Run Sediment' (int): Flag to run sediment transport module (0 or 1)
-        - 'Run UNET' (int): Flag to run unsteady network module (-1 or 1)
-        - 'Run WQNET' (int): Flag to run water quality module (0 or 1)
-        - 'Short Identifier' (str): Short name or ID for the plan
-        - 'Simulation Date' (str): Start and end dates/times for simulation
-        - 'UNET D1 Cores' (int): Number of cores used in 1D calculations
-        - 'UNET D2 Cores' (int): Number of cores used in 2D calculations
-        - 'PS Cores' (int): Number of cores used in parallel simulation
-        - 'UNET Use Existing IB Tables' (int): Flag for using existing internal boundary tables (-1, 0, or 1)
-        - 'UNET 1D Methodology' (str): 1D calculation methodology
-        - 'UNET D2 Solver Type' (str): 2D solver type
-        - 'UNET D2 Name' (str): Name of the 2D area
-        - 'Run RASMapper' (int): Flag to run RASMapper for floodplain mapping (-1 for off, 0 for on)
-        
-        Note: 
-        Writing Multi line keys like 'Description' are not supported by this function.
-
-        Example:
-        >>> computation_interval = RasPlan.get_plan_value("01", "Computation Interval")
-        >>> print(f"Computation interval: {computation_interval}")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        supported_plan_keys = {
-            'Description', 'Computation Interval', 'DSS File', 'Flow File', 'Friction Slope Method',
-            'Geom File', 'Mapping Interval', 'Plan File', 'Plan Title', 'Program Version',
-            'Run HTab', 'Run Post Process', 'Run Sediment', 'Run UNET', 'Run WQNET',
-            'Short Identifier', 'Simulation Date', 'UNET D1 Cores', 'UNET D2 Cores', 'PS Cores',
-            'UNET Use Existing IB Tables', 'UNET 1D Methodology', 'UNET D2 Solver Type', 
-            'UNET D2 Name', 'Run RASMapper', 'Run HTab', 'Run UNET'
-        }
-
-        if key not in supported_plan_keys:
-            logger = logging.getLogger(__name__)
-            logger.warning(f"Unknown key: {key}. Valid keys are: {', '.join(supported_plan_keys)}\n Add more keys and explanations in get_plan_value() as needed.")
-
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
-            if plan_file_path is None or not Path(plan_file_path).exists():
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        try:
-            with open(plan_file_path, 'r') as file:
-                content = file.read()
-        except IOError as e:
-            logger = logging.getLogger(__name__)
-            logger.error(f"Error reading plan file {plan_file_path}: {e}")
-            raise
-
-        # Handle core settings specially to convert to integers
-        core_keys = {'UNET D1 Cores', 'UNET D2 Cores', 'PS Cores'}
-        if key in core_keys:
-            pattern = f"{key}=(.*)"
-            match = re.search(pattern, content)
-            if match:
-                try:
-                    return int(match.group(1).strip())
-                except ValueError:
-                    logger = logging.getLogger(__name__)
-                    logger.error(f"Could not convert {key} value to integer")
-                    return None
-            else:
-                logger = logging.getLogger(__name__)
-                logger.error(f"Key '{key}' not found in the plan file.")
-                return None
-        elif key == 'Description':
-            match = re.search(r'Begin DESCRIPTION(.*?)END DESCRIPTION', content, re.DOTALL)
-            return match.group(1).strip() if match else None
-        else:
-            pattern = f"{key}=(.*)"
-            match = re.search(pattern, content)
-            if match:
-                return match.group(1).strip()
-            else:
-                logger = logging.getLogger(__name__)
-                logger.error(f"Key '{key}' not found in the plan file.")
-                return None
-
-
-#  NEW FUNCTIONS THAT NEED TESTING AND EXAMPLES
-
-
-    @staticmethod
-    @log_call
-    def update_run_flags(
-        plan_number_or_path: Union[str, Path],
-        geometry_preprocessor: bool = None,
-        unsteady_flow_simulation: bool = None,
-        run_sediment: bool = None,
-        post_processor: bool = None,
-        floodplain_mapping: bool = None,
-        ras_object=None
-    ) -> None:
-        """
-        Update the run flags in a HEC-RAS plan file.
-
-        Parameters:
-        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
-        geometry_preprocessor (bool, optional): Flag for Geometry Preprocessor
-        unsteady_flow_simulation (bool, optional): Flag for Unsteady Flow Simulation
-        run_sediment (bool, optional): Flag for run_sediment
-        post_processor (bool, optional): Flag for Post Processor
-        floodplain_mapping (bool, optional): Flag for Floodplain Mapping
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Raises:
-        ValueError: If the plan file is not found
-        IOError: If there's an error reading or writing the plan file
-
-        Example:
-        >>> RasPlan.update_run_flags("01", geometry_preprocessor=True, unsteady_flow_simulation=True, run_sediment=False, post_processor=True, floodplain_mapping=False)
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
-            if plan_file_path is None or not Path(plan_file_path).exists():
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        flag_mapping = {
-            'geometry_preprocessor': ('Run HTab', geometry_preprocessor),
-            'unsteady_flow_simulation': ('Run UNet', unsteady_flow_simulation),
-            'run_sediment': ('Run run_sediment', run_sediment),
-            'post_processor': ('Run PostProcess', post_processor),
-            'floodplain_mapping': ('Run RASMapper', floodplain_mapping)
-        }
-
-        try:
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-
-            for i, line in enumerate(lines):
-                for key, (file_key, value) in flag_mapping.items():
-                    if value is not None and line.strip().startswith(file_key):
-                        lines[i] = f"{file_key}= {1 if value else 0}\n"
-
-            with open(plan_file_path, 'w') as file:
-                file.writelines(lines)
-
-            logger = logging.getLogger(__name__)
-            logger.info(f"Successfully updated run flags in plan file: {plan_file_path}")
-
-        except IOError as e:
-            logger = logging.getLogger(__name__)
-            logger.error(f"Error updating run flags in plan file {plan_file_path}: {e}")
-            raise
-
-
-
-    @staticmethod
-    @log_call
-    def update_plan_intervals(
-        plan_number_or_path: Union[str, Path],
-        computation_interval: Optional[str] = None,
-        output_interval: Optional[str] = None,
-        instantaneous_interval: Optional[str] = None,
-        mapping_interval: Optional[str] = None,
-        ras_object=None
-    ) -> None:
-        """
-        Update the computation and output intervals in a HEC-RAS plan file.
-
-        Parameters:
-        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
-        computation_interval (Optional[str]): The new computation interval. Valid entries include:
-            '1SEC', '2SEC', '3SEC', '4SEC', '5SEC', '6SEC', '10SEC', '15SEC', '20SEC', '30SEC',
-            '1MIN', '2MIN', '3MIN', '4MIN', '5MIN', '6MIN', '10MIN', '15MIN', '20MIN', '30MIN',
-            '1HOUR', '2HOUR', '3HOUR', '4HOUR', '6HOUR', '8HOUR', '12HOUR', '1DAY'
-        output_interval (Optional[str]): The new output interval. Valid entries are the same as computation_interval.
-        instantaneous_interval (Optional[str]): The new instantaneous interval. Valid entries are the same as computation_interval.
-        mapping_interval (Optional[str]): The new mapping interval. Valid entries are the same as computation_interval.
-        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
-
-        Raises:
-        ValueError: If the plan file is not found or if an invalid interval is provided
-        IOError: If there's an error reading or writing the plan file
-
-        Note: This function does not check if the intervals are equal divisors. Ensure you use valid values from HEC-RAS.
-
-        Example:
-        >>> RasPlan.update_plan_intervals("01", computation_interval="5SEC", output_interval="1MIN", instantaneous_interval="1HOUR", mapping_interval="5MIN")
-        >>> RasPlan.update_plan_intervals("/path/to/plan.p01", computation_interval="10SEC", output_interval="30SEC")
-        """
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
-            if plan_file_path is None or not Path(plan_file_path).exists():
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        valid_intervals = [
-            '1SEC', '2SEC', '3SEC', '4SEC', '5SEC', '6SEC', '10SEC', '15SEC', '20SEC', '30SEC',
-            '1MIN', '2MIN', '3MIN', '4MIN', '5MIN', '6MIN', '10MIN', '15MIN', '20MIN', '30MIN',
-            '1HOUR', '2HOUR', '3HOUR', '4HOUR', '6HOUR', '8HOUR', '12HOUR', '1DAY'
-        ]
-
-        interval_mapping = {
-            'Computation Interval': computation_interval,
-            'Output Interval': output_interval,
-            'Instantaneous Interval': instantaneous_interval,
-            'Mapping Interval': mapping_interval
-        }
-
-        try:
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-
-            for i, line in enumerate(lines):
-                for key, value in interval_mapping.items():
-                    if value is not None:
-                        if value.upper() not in valid_intervals:
-                            raise ValueError(f"Invalid {key}: {value}. Must be one of {valid_intervals}")
-                        if line.strip().startswith(key):
-                            lines[i] = f"{key}={value.upper()}\n"
-
-            with open(plan_file_path, 'w') as file:
-                file.writelines(lines)
-
-            logger = logging.getLogger(__name__)
-            logger.info(f"Successfully updated intervals in plan file: {plan_file_path}")
-
-        except IOError as e:
-            logger = logging.getLogger(__name__)
-            logger.error(f"Error updating intervals in plan file {plan_file_path}: {e}")
-            raise
-
-
-    @log_call
-    def update_plan_description(plan_number_or_path: Union[str, Path], description: str, ras_object: Optional['RasPrj'] = None) -> None:
-        """
-        Update the description block in a HEC-RAS plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or full path to the plan file
-            description (str): The new description text to set
-            ras_object (Optional[RasPrj]): Specific RAS object to use. If None, uses the global ras instance.
-
-        Raises:
-            ValueError: If the plan file is not found
-            IOError: If there's an error reading or writing the plan file
-        """
-        logger = get_logger(__name__)
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_object)
-            if not plan_file_path.exists():
-                logger.error(f"Plan file not found: {plan_file_path}")
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        try:
-            with open(plan_file_path, 'r') as file:
-                content = file.read()
-
-            # Find the description block
-            desc_pattern = r'Begin DESCRIPTION.*?END DESCRIPTION'
-            new_desc_block = f'Begin DESCRIPTION\n{description}\nEND DESCRIPTION'
-
-            if re.search(desc_pattern, content, re.DOTALL):
-                # Replace existing description block
-                new_content = re.sub(desc_pattern, new_desc_block, content, flags=re.DOTALL)
-            else:
-                # Add new description block at the start of the file
-                new_content = new_desc_block + '\n' + content
-
-            # Write the updated content back to the file
-            with open(plan_file_path, 'w') as file:
-                file.write(new_content)
-
-            logger.info(f"Updated description in plan file: {plan_file_path}")
-
-            # Update the dataframes in the RAS object to reflect changes
-            if ras_object:
-                ras_object.plan_df = ras_object.get_plan_entries()
-                ras_object.geom_df = ras_object.get_geom_entries()
-                ras_object.flow_df = ras_object.get_flow_entries()
-                ras_object.unsteady_df = ras_object.get_unsteady_entries()
-
-        except IOError as e:
-            logger.error(f"Error updating plan description in {plan_file_path}: {e}")
-            raise
-        except Exception as e:
-            logger.error(f"Unexpected error updating plan description: {e}")
-            raise
-
-    @staticmethod
-    @log_call
-    def read_plan_description(plan_number_or_path: Union[str, Path], ras_object: Optional['RasPrj'] = None) -> str:
-        """
-        Read the description from the plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
-
-        Returns:
-            str: The description from the plan file.
-
-        Raises:
-            ValueError: If the plan file is not found.
-            IOError: If there's an error reading from the plan file.
-        """
-        logger = logging.getLogger(__name__)
-
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object)
-            if plan_file_path is None or not Path(plan_file_path).exists():
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        try:
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-        except IOError as e:
-            logger.error(f"Error reading plan file {plan_file_path}: {e}")
-            raise
-
-        description_lines = []
-        in_description = False
-        description_found = False
-        for line in lines:
-            if line.strip() == "BEGIN DESCRIPTION:":
-                in_description = True
-                description_found = True
-            elif line.strip() == "END DESCRIPTION:":
-                break
-            elif in_description:
-                description_lines.append(line.strip())
-
-        if not description_found:
-            logger.warning(f"No description found in plan file: {plan_file_path}")
-            return ""
-
-        description = '\n'.join(description_lines)
-        logger.info(f"Read description from plan file: {plan_file_path}")
-        return description
-
-
-
-
-    @staticmethod
-    @log_call
-    def update_simulation_date(plan_number_or_path: Union[str, Path], start_date: datetime, end_date: datetime, ras_object: Optional['RasPrj'] = None) -> None:
-        """
-        Update the simulation date for a given plan.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            start_date (datetime): The start date and time for the simulation.
-            end_date (datetime): The end date and time for the simulation.
-            ras_object (Optional['RasPrj']): The RAS project object. Defaults to None.
-
-        Raises:
-            ValueError: If the plan file is not found or if there's an error updating the file.
-        """
-
-        # Get the plan file path
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object)
-            if plan_file_path is None or not Path(plan_file_path).exists():
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        # Format the dates
-        formatted_date = f"{start_date.strftime('%d%b%Y').upper()},{start_date.strftime('%H%M')},{end_date.strftime('%d%b%Y').upper()},{end_date.strftime('%H%M')}"
-
-        try:
-            # Read the file
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-
-            # Update the Simulation Date line
-            updated = False
-            for i, line in enumerate(lines):
-                if line.startswith("Simulation Date="):
-                    lines[i] = f"Simulation Date={formatted_date}\n"
-                    updated = True
-                    break
-
-            # If Simulation Date line not found, add it at the end
-            if not updated:
-                lines.append(f"Simulation Date={formatted_date}\n")
-
-            # Write the updated content back to the file
-            with open(plan_file_path, 'w') as file:
-                file.writelines(lines)
-
-            logger.info(f"Updated simulation date in plan file: {plan_file_path}")
-
-        except IOError as e:
-            logger.error(f"Error updating simulation date in plan file {plan_file_path}: {e}")
-            raise ValueError(f"Error updating simulation date: {e}")
-
-        # Refresh RasPrj dataframes
-        if ras_object:
-            ras_object.plan_df = ras_object.get_plan_entries()
-            ras_object.unsteady_df = ras_object.get_unsteady_entries()
-
-    @staticmethod
-    @log_call
-    def get_shortid(plan_number_or_path: Union[str, Path], ras_object=None) -> str:
-        """
-        Get the Short Identifier from a HEC-RAS plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
-
-        Returns:
-            str: The Short Identifier from the plan file.
-
-        Raises:
-            ValueError: If the plan file is not found.
-            IOError: If there's an error reading from the plan file.
-
-        Example:
-            >>> shortid = RasPlan.get_shortid('01')
-            >>> print(f"Plan's Short Identifier: {shortid}")
-        """
-        logger = get_logger(__name__)
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Get the Short Identifier using get_plan_value
-        shortid = RasPlan.get_plan_value(plan_number_or_path, "Short Identifier", ras_obj)
-        
-        if shortid is None:
-            logger.warning(f"Short Identifier not found in plan: {plan_number_or_path}")
-            return ""
-        
-        logger.info(f"Retrieved Short Identifier: {shortid}")
-        return shortid
-
-    @staticmethod
-    @log_call
-    def set_shortid(plan_number_or_path: Union[str, Path], new_shortid: str, ras_object=None) -> None:
-        """
-        Set the Short Identifier in a HEC-RAS plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            new_shortid (str): The new Short Identifier to set (max 24 characters).
-            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
-
-        Raises:
-            ValueError: If the plan file is not found or if new_shortid is too long.
-            IOError: If there's an error updating the plan file.
-
-        Example:
-            >>> RasPlan.set_shortid('01', 'NewShortIdentifier')
-        """
-        logger = get_logger(__name__)
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Ensure new_shortid is not too long (HEC-RAS limits short identifiers to 24 characters)
-        if len(new_shortid) > 24:
-            logger.warning(f"Short Identifier too long (24 char max). Truncating: {new_shortid}")
-            new_shortid = new_shortid[:24]
-
-        # Get the plan file path
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_obj)
-            if not plan_file_path.exists():
-                logger.error(f"Plan file not found: {plan_file_path}")
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        try:
-            # Read the file
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-
-            # Update the Short Identifier line
-            updated = False
-            for i, line in enumerate(lines):
-                if line.startswith("Short Identifier="):
-                    lines[i] = f"Short Identifier={new_shortid}\n"
-                    updated = True
-                    break
-
-            # If Short Identifier line not found, add it after Plan Title
-            if not updated:
-                for i, line in enumerate(lines):
-                    if line.startswith("Plan Title="):
-                        lines.insert(i+1, f"Short Identifier={new_shortid}\n")
-                        updated = True
-                        break
-                
-                # If Plan Title not found either, add at the beginning
-                if not updated:
-                    lines.insert(0, f"Short Identifier={new_shortid}\n")
-
-            # Write the updated content back to the file
-            with open(plan_file_path, 'w') as file:
-                file.writelines(lines)
-
-            logger.info(f"Updated Short Identifier in plan file to: {new_shortid}")
-
-        except IOError as e:
-            logger.error(f"Error updating Short Identifier in plan file {plan_file_path}: {e}")
-            raise ValueError(f"Error updating Short Identifier: {e}")
-
-        # Refresh RasPrj dataframes if ras_object provided
-        if ras_object:
-            ras_object.plan_df = ras_object.get_plan_entries()
-
-    @staticmethod
-    @log_call
-    def get_plan_title(plan_number_or_path: Union[str, Path], ras_object=None) -> str:
-        """
-        Get the Plan Title from a HEC-RAS plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
-
-        Returns:
-            str: The Plan Title from the plan file.
-
-        Raises:
-            ValueError: If the plan file is not found.
-            IOError: If there's an error reading from the plan file.
-
-        Example:
-            >>> title = RasPlan.get_plan_title('01')
-            >>> print(f"Plan Title: {title}")
-        """
-        logger = get_logger(__name__)
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Get the Plan Title using get_plan_value
-        title = RasPlan.get_plan_value(plan_number_or_path, "Plan Title", ras_obj)
-        
-        if title is None:
-            logger.warning(f"Plan Title not found in plan: {plan_number_or_path}")
-            return ""
-        
-        logger.info(f"Retrieved Plan Title: {title}")
-        return title
-
-    @staticmethod
-    @log_call
-    def set_plan_title(plan_number_or_path: Union[str, Path], new_title: str, ras_object=None) -> None:
-        """
-        Set the Plan Title in a HEC-RAS plan file.
-
-        Args:
-            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
-            new_title (str): The new Plan Title to set.
-            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
-
-        Raises:
-            ValueError: If the plan file is not found.
-            IOError: If there's an error updating the plan file.
-
-        Example:
-            >>> RasPlan.set_plan_title('01', 'Updated Plan Scenario')
-        """
-        logger = get_logger(__name__)
-        ras_obj = ras_object or ras
-        ras_obj.check_initialized()
-
-        # Get the plan file path
-        plan_file_path = Path(plan_number_or_path)
-        if not plan_file_path.is_file():
-            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_obj)
-            if not plan_file_path.exists():
-                logger.error(f"Plan file not found: {plan_file_path}")
-                raise ValueError(f"Plan file not found: {plan_file_path}")
-
-        try:
-            # Read the file
-            with open(plan_file_path, 'r') as file:
-                lines = file.readlines()
-
-            # Update the Plan Title line
-            updated = False
-            for i, line in enumerate(lines):
-                if line.startswith("Plan Title="):
-                    lines[i] = f"Plan Title={new_title}\n"
-                    updated = True
-                    break
-
-            # If Plan Title line not found, add it at the beginning
-            if not updated:
-                lines.insert(0, f"Plan Title={new_title}\n")
-
-            # Write the updated content back to the file
-            with open(plan_file_path, 'w') as file:
-                file.writelines(lines)
-
-            logger.info(f"Updated Plan Title in plan file to: {new_title}")
-
-        except IOError as e:
-            logger.error(f"Error updating Plan Title in plan file {plan_file_path}: {e}")
-            raise ValueError(f"Error updating Plan Title: {e}")
-
-        # Refresh RasPrj dataframes if ras_object provided
-        if ras_object:
+"""
+RasPlan - Operations for handling plan files in HEC-RAS projects
+
+This module is part of the ras-commander library and uses a centralized logging configuration.
+
+Logging Configuration:
+- The logging is set up in the logging_config.py file.
+- A @log_call decorator is available to automatically log function calls.
+- Log levels: DEBUG, INFO, WARNING, ERROR, CRITICAL
+- Logs are written to both console and a rotating file handler.
+- The default log file is 'ras_commander.log' in the 'logs' directory.
+- The default log level is INFO.
+
+To use logging in this module:
+1. Use the @log_call decorator for automatic function call logging.
+2. For additional logging, use logger.[level]() calls (e.g., logger.info(), logger.debug()).
+3. Obtain the logger using: logger = logging.getLogger(__name__)
+
+Example:
+    @log_call
+    def my_function():
+        logger = logging.getLogger(__name__)
+        logger.debug("Additional debug information")
+        # Function logic here
+        
+        
+-----
+
+All of the methods in this class are static and are designed to be used without instantiation.
+
+List of Functions in RasPlan:
+- set_geom(): Set the geometry for a specified plan
+- set_steady(): Apply a steady flow file to a plan file
+- set_unsteady(): Apply an unsteady flow file to a plan file
+- set_num_cores(): Update the maximum number of cores to use
+- set_geom_preprocessor(): Update geometry preprocessor settings
+- clone_plan(): Create a new plan file based on a template
+- clone_unsteady(): Copy unsteady flow files from a template
+- clone_steady(): Copy steady flow files from a template
+- clone_geom(): Copy geometry files from a template
+- get_next_number(): Determine the next available number from a list
+- get_plan_value(): Retrieve a specific value from a plan file
+- get_results_path(): Get the results file path for a plan
+- get_plan_path(): Get the full path for a plan number
+- get_flow_path(): Get the full path for a flow number
+- get_unsteady_path(): Get the full path for an unsteady number
+- get_geom_path(): Get the full path for a geometry number
+- update_run_flags(): Update various run flags in a plan file
+- update_plan_intervals(): Update computation and output intervals
+- update_plan_description(): Update the description in a plan file
+- read_plan_description(): Read the description from a plan file
+- update_simulation_date(): Update simulation start and end dates
+- get_shortid(): Get the Short Identifier from a plan file
+- set_shortid(): Set the Short Identifier in a plan file
+- get_plan_title(): Get the Plan Title from a plan file
+- set_plan_title(): Set the Plan Title in a plan file
+
+
+        
+"""
+import os
+import re
+import logging
+from pathlib import Path
+import shutil
+from typing import Union, Optional
+import pandas as pd
+from .RasPrj import RasPrj, ras
+from .RasUtils import RasUtils
+from pathlib import Path
+from typing import Union, Any
+from datetime import datetime
+
+import logging
+import re
+from .LoggingConfig import get_logger
+from .Decorators import log_call
+
+logger = get_logger(__name__)
+
+class RasPlan:
+    """
+    A class for operations on HEC-RAS plan files.
+    """
+    
+    @staticmethod
+    @log_call
+    def set_geom(plan_number: Union[str, int], new_geom: Union[str, int], ras_object=None) -> pd.DataFrame:
+        """
+        Set the geometry for the specified plan.
+
+        Parameters:
+            plan_number (Union[str, int]): The plan number to update.
+            new_geom (Union[str, int]): The new geometry number to set.
+            ras_object: An optional RAS object instance.
+
+        Returns:
+            pd.DataFrame: The updated geometry DataFrame.
+
+        Example:
+            updated_geom_df = RasPlan.set_geom('02', '03')
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        plan_number = str(plan_number).zfill(2)
+        new_geom = str(new_geom).zfill(2)
+
+        # Update all dataframes
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+        
+        if new_geom not in ras_obj.geom_df['geom_number'].values:
+            logger.error(f"Geometry {new_geom} not found in project.")
+            raise ValueError(f"Geometry {new_geom} not found in project.")
+
+        # Update all geometry-related columns
+        mask = ras_obj.plan_df['plan_number'] == plan_number
+        ras_obj.plan_df.loc[mask, 'geom_number'] = new_geom
+        ras_obj.plan_df.loc[mask, 'Geom File'] = f"g{new_geom}"
+        geom_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{new_geom}"
+        ras_obj.plan_df.loc[mask, 'Geom Path'] = str(geom_path)
+
+        logger.info(f"Geometry for plan {plan_number} set to {new_geom}")
+        logger.debug("Updated plan DataFrame:")
+        logger.debug(ras_obj.plan_df)
+
+        # Update project file and reinitialize
+        RasUtils.update_file(ras_obj.prj_file, RasPlan._update_geom_in_file, plan_number, new_geom)
+        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
+
+        return ras_obj.plan_df
+
+    @staticmethod
+    def _update_geom_in_file(lines, plan_number, new_geom):
+        plan_pattern = re.compile(rf"^Plan File=p{plan_number}", re.IGNORECASE)
+        geom_pattern = re.compile(r"^Geom File=g\d+", re.IGNORECASE)
+        
+        for i, line in enumerate(lines):
+            if plan_pattern.match(line):
+                for j in range(i+1, len(lines)):
+                    if geom_pattern.match(lines[j]):
+                        lines[j] = f"Geom File=g{new_geom}\n"
+                        logger.info(f"Updated Geom File in project file to g{new_geom} for plan {plan_number}")
+                        break
+                break
+        return lines
+
+    @staticmethod
+    @log_call
+    def set_steady(plan_number: str, new_steady_flow_number: str, ras_object=None):
+        """
+        Apply a steady flow file to a plan file.
+        
+        Parameters:
+        plan_number (str): Plan number (e.g., '02')
+        new_steady_flow_number (str): Steady flow number to apply (e.g., '01')
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        None
+
+        Raises:
+        ValueError: If the specified steady flow number is not found in the project file
+        FileNotFoundError: If the specified plan file is not found
+
+        Example:
+        >>> RasPlan.set_steady('02', '01')
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+                        
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        
+        if new_steady_flow_number not in ras_obj.flow_df['flow_number'].values:
+            raise ValueError(f"Steady flow number {new_steady_flow_number} not found in project file.")
+        
+        plan_file_path = RasPlan.get_plan_path(plan_number, ras_obj)
+        if not plan_file_path:
+            raise FileNotFoundError(f"Plan file not found: {plan_number}")
+        
+        try:
+            RasUtils.update_file(plan_file_path, RasPlan._update_steady_in_file, new_steady_flow_number)
+            
+            # Update all dataframes
+            ras_obj.plan_df = ras_obj.get_plan_entries()
+            
+            # Update flow-related columns
+            mask = ras_obj.plan_df['plan_number'] == plan_number
+            flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.f{new_steady_flow_number}"
+            ras_obj.plan_df.loc[mask, 'Flow File'] = f"f{new_steady_flow_number}"
+            ras_obj.plan_df.loc[mask, 'Flow Path'] = str(flow_path)
+            ras_obj.plan_df.loc[mask, 'unsteady_number'] = None
+            
+            # Update remaining dataframes
+            ras_obj.geom_df = ras_obj.get_geom_entries()
+            ras_obj.flow_df = ras_obj.get_flow_entries()
+            ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+            
+        except Exception as e:
+            raise IOError(f"Failed to update steady flow file: {e}")
+
+    @staticmethod
+    def _update_steady_in_file(lines, new_steady_flow_number):
+        return [f"Flow File=f{new_steady_flow_number}\n" if line.startswith("Flow File=f") else line for line in lines]
+
+    @staticmethod
+    @log_call
+    def set_unsteady(plan_number: str, new_unsteady_flow_number: str, ras_object=None):
+        """
+        Apply an unsteady flow file to a plan file.
+        
+        Parameters:
+        plan_number (str): Plan number (e.g., '04')
+        new_unsteady_flow_number (str): Unsteady flow number to apply (e.g., '01')
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        None
+
+        Raises:
+        ValueError: If the specified unsteady number is not found in the project file
+        FileNotFoundError: If the specified plan file is not found
+
+        Example:
+        >>> RasPlan.set_unsteady('04', '01')
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+        
+        if new_unsteady_flow_number not in ras_obj.unsteady_df['unsteady_number'].values:
+            raise ValueError(f"Unsteady number {new_unsteady_flow_number} not found in project file.")
+        
+        plan_file_path = RasPlan.get_plan_path(plan_number, ras_obj)
+        if not plan_file_path:
+            raise FileNotFoundError(f"Plan file not found: {plan_number}")
+        
+        try:
+            RasUtils.update_file(plan_file_path, RasPlan._update_unsteady_in_file, new_unsteady_flow_number)
+            
+            # Update all dataframes
+            ras_obj.plan_df = ras_obj.get_plan_entries()
+            
+            # Update flow-related columns
+            mask = ras_obj.plan_df['plan_number'] == plan_number
+            flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{new_unsteady_flow_number}"
+            ras_obj.plan_df.loc[mask, 'Flow File'] = f"u{new_unsteady_flow_number}"
+            ras_obj.plan_df.loc[mask, 'Flow Path'] = str(flow_path)
+            ras_obj.plan_df.loc[mask, 'unsteady_number'] = new_unsteady_flow_number
+            
+            # Update remaining dataframes
+            ras_obj.geom_df = ras_obj.get_geom_entries()
+            ras_obj.flow_df = ras_obj.get_flow_entries()
+            ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+            
+        except Exception as e:
+            raise IOError(f"Failed to update unsteady flow file: {e}")
+
+    @staticmethod
+    def _update_unsteady_in_file(lines, new_unsteady_flow_number):
+        return [f"Unsteady File=u{new_unsteady_flow_number}\n" if line.startswith("Unsteady File=u") else line for line in lines]
+    
+    @staticmethod
+    @log_call
+    def set_num_cores(plan_number, num_cores, ras_object=None):
+        """
+        Update the maximum number of cores to use in the HEC-RAS plan file.
+        
+        Parameters:
+        plan_number (str): Plan number (e.g., '02') or full path to the plan file
+        num_cores (int): Maximum number of cores to use
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        None
+
+        Number of cores is controlled by the following parameters in the plan file corresponding to 1D, 2D, Pipe Systems and Pump Stations:
+        UNET D1 Cores=  
+        UNET D2 Cores=
+        PS Cores=
+
+        Where a value of "0" is used for "All Available" cores, and values of 1 or more are used to specify the number of cores to use.
+        For complex 1D/2D models with pipe systems, a more complex approach may be needed to optimize performance.  (Suggest writing a custom function based on this code).
+        This function simply sets the "num_cores" parameter for ALL instances of the above parameters in the plan file.
+
+
+        Notes on setting num_cores in HEC-RAS:
+        The recommended setting for num_cores is 2 (most efficient) to 8 (most performant)
+        More details in the HEC-Commander Repository Blog "Benchmarking is All You Need"
+        https://github.com/billk-FM/HEC-Commander/blob/main/Blog/7._Benchmarking_Is_All_You_Need.md
+        
+        Microsoft Windows has a maximum of 64 cores that can be allocated to a single Ras.exe process. 
+
+        Example:
+        >>> # Using plan number
+        >>> RasPlan.set_num_cores('02', 4)
+        >>> # Using full path to plan file
+        >>> RasPlan.set_num_cores('/path/to/project.p02', 4)
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        plan_file_path = RasUtils.get_plan_path(plan_number, ras_obj)
+        if not plan_file_path:
+            raise FileNotFoundError(f"Plan file not found: {plan_number}. Please provide a valid plan number or path.")
+        
+        def update_num_cores(lines):
+            updated_lines = []
+            for line in lines:
+                if any(param in line for param in ["UNET D1 Cores=", "UNET D2 Cores=", "PS Cores="]):
+                    param_name = line.split("=")[0]
+                    updated_lines.append(f"{param_name}= {num_cores}\n")
+                else:
+                    updated_lines.append(line)
+            return updated_lines
+        
+        try:
+            RasUtils.update_file(plan_file_path, update_num_cores)
+        except Exception as e:
+            raise IOError(f"Failed to update number of cores in plan file: {e}")
+        
+        # Update the ras object's dataframes
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+
+    @staticmethod
+    @log_call
+    def set_geom_preprocessor(file_path, run_htab, use_ib_tables, ras_object=None):
+        """
+        Update the simulation plan file to modify the `Run HTab` and `UNET Use Existing IB Tables` settings.
+        
+        Parameters:
+        file_path (str): Path to the simulation plan file (.p06 or similar) that you want to modify.
+        run_htab (int): Value for the `Run HTab` setting:
+            - `0` : Do not run the geometry preprocessor, use existing geometry tables.
+            - `-1` : Run the geometry preprocessor, forcing a recomputation of the geometry tables.
+        use_ib_tables (int): Value for the `UNET Use Existing IB Tables` setting:
+            - `0` : Use existing interpolation/boundary (IB) tables without recomputing them.
+            - `-1` : Do not use existing IB tables, force a recomputation.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        None
+
+        Raises:
+        ValueError: If `run_htab` or `use_ib_tables` are not integers or not within the accepted values (`0` or `-1`).
+        FileNotFoundError: If the specified file does not exist.
+        IOError: If there is an error reading or writing the file.
+
+        Example:
+        >>> RasPlan.set_geom_preprocessor('/path/to/project.p06', run_htab=-1, use_ib_tables=0)
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        if run_htab not in [-1, 0]:
+            raise ValueError("Invalid value for `Run HTab`. Expected `0` or `-1`.")
+        if use_ib_tables not in [-1, 0]:
+            raise ValueError("Invalid value for `UNET Use Existing IB Tables`. Expected `0` or `-1`.")
+        
+        def update_geom_preprocessor(lines, run_htab, use_ib_tables):
+            updated_lines = []
+            for line in lines:
+                if line.lstrip().startswith("Run HTab="):
+                    updated_lines.append(f"Run HTab= {run_htab} \n")
+                elif line.lstrip().startswith("UNET Use Existing IB Tables="):
+                    updated_lines.append(f"UNET Use Existing IB Tables= {use_ib_tables} \n")
+                else:
+                    updated_lines.append(line)
+            return updated_lines
+        
+        try:
+            RasUtils.update_file(file_path, update_geom_preprocessor, run_htab, use_ib_tables)
+        except FileNotFoundError:
+            raise FileNotFoundError(f"The file '{file_path}' does not exist.")
+        except IOError as e:
+            raise IOError(f"An error occurred while reading or writing the file: {e}")
+
+        # Update the ras object's dataframes
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+
+    @staticmethod
+    @log_call
+    def get_results_path(plan_number: str, ras_object=None) -> Optional[str]:
+        """
+        Retrieve the results file path for a given HEC-RAS plan number.
+
+        Args:
+            plan_number (str): The HEC-RAS plan number for which to find the results path.
+            ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+            Optional[str]: The full path to the results file if found and the file exists, or None if not found.
+
+        Raises:
+            RuntimeError: If the project is not initialized.
+
+        Example:
+            >>> ras_plan = RasPlan()
+            >>> results_path = ras_plan.get_results_path('01')
+            >>> if results_path:
+            ...     print(f"Results file found at: {results_path}")
+            ... else:
+            ...     print("Results file not found.")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        # Update the plan dataframe in the ras instance to ensure it is current
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        
+        # Ensure plan_number is a string
+        plan_number = str(plan_number).zfill(2)
+        
+        plan_entry = ras_obj.plan_df[ras_obj.plan_df['plan_number'] == plan_number]
+        if not plan_entry.empty:
+            results_path = plan_entry['HDF_Results_Path'].iloc[0]
+            if results_path and Path(results_path).exists():
+                return results_path
+            else:
+                return None
+        else:
+            return None
+
+    @staticmethod
+    @log_call
+    def get_plan_path(plan_number: str, ras_object=None) -> Optional[str]:
+        """
+        Return the full path for a given plan number.
+        
+        This method ensures that the latest plan entries are included by refreshing
+        the plan dataframe before searching for the requested plan number.
+        
+        Args:
+        plan_number (str): The plan number to search for.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        Optional[str]: The full path of the plan file if found, None otherwise.
+        
+        Raises:
+        RuntimeError: If the project is not initialized.
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> plan_path = ras_plan.get_plan_path('01')
+        >>> if plan_path:
+        ...     print(f"Plan file found at: {plan_path}")
+        ... else:
+        ...     print("Plan file not found.")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        plan_df = ras_obj.get_plan_entries()
+        
+        plan_path = plan_df[plan_df['plan_number'] == plan_number]
+        
+        if not plan_path.empty:
+            if 'full_path' in plan_path.columns and not pd.isna(plan_path['full_path'].iloc[0]):
+                return plan_path['full_path'].iloc[0]
+            else:
+                # Fallback to constructing path
+                return str(ras_obj.project_folder / f"{ras_obj.project_name}.p{plan_number}")
+        return None
+
+    @staticmethod
+    @log_call
+    def get_flow_path(flow_number: str, ras_object=None) -> Optional[str]:
+        """
+        Return the full path for a given flow number.
+
+        Args:
+        flow_number (str): The flow number to search for.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+        Optional[str]: The full path of the flow file if found, None otherwise.
+
+        Raises:
+        RuntimeError: If the project is not initialized.
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> flow_path = ras_plan.get_flow_path('01')
+        >>> if flow_path:
+        ...     print(f"Flow file found at: {flow_path}")
+        ... else:
+        ...     print("Flow file not found.")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        # Use updated flow dataframe
+        ras_obj.flow_df = ras_obj.get_prj_entries('Flow')
+        
+        flow_path = ras_obj.flow_df[ras_obj.flow_df['flow_number'] == flow_number]
+        if not flow_path.empty:
+            full_path = flow_path['full_path'].iloc[0]
+            return full_path
+        else:
+            return None
+
+    @staticmethod
+    @log_call
+    def get_unsteady_path(unsteady_number: str, ras_object=None) -> Optional[str]:
+        """
+        Return the full path for a given unsteady number.
+
+        Args:
+        unsteady_number (str): The unsteady number to search for.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+        Optional[str]: The full path of the unsteady file if found, None otherwise.
+
+        Raises:
+        RuntimeError: If the project is not initialized.
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> unsteady_path = ras_plan.get_unsteady_path('01')
+        >>> if unsteady_path:
+        ...     print(f"Unsteady file found at: {unsteady_path}")
+        ... else:
+        ...     print("Unsteady file not found.")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        # Use updated unsteady dataframe
+        ras_obj.unsteady_df = ras_obj.get_prj_entries('Unsteady')
+        
+        unsteady_path = ras_obj.unsteady_df[ras_obj.unsteady_df['unsteady_number'] == unsteady_number]
+        if not unsteady_path.empty:
+            full_path = unsteady_path['full_path'].iloc[0]
+            return full_path
+        else:
+            return None
+
+    @staticmethod
+    @log_call
+    def get_geom_path(geom_number: str, ras_object=None) -> Optional[str]:
+        """
+        Return the full path for a given geometry number.
+
+        Args:
+        geom_number (str): The geometry number to search for.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+        Optional[str]: The full path of the geometry file if found, None otherwise.
+
+        Raises:
+        RuntimeError: If the project is not initialized.
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> geom_path = ras_plan.get_geom_path('01')
+        >>> if geom_path:
+        ...     print(f"Geometry file found at: {geom_path}")
+        ... else:
+        ...     print("Geometry file not found.")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+        
+        # Use updated geom dataframe
+        ras_obj.geom_df = ras_obj.get_prj_entries('Geom')
+        
+        geom_path = ras_obj.geom_df[ras_obj.geom_df['geom_number'] == geom_number]
+        if not geom_path.empty:
+            full_path = geom_path['full_path'].iloc[0]
+            return full_path
+        else:
+            return None
+
+    # Clone Functions to copy unsteady, flow, and geometry files from templates
+
+    @staticmethod
+    @log_call
+    def clone_plan(template_plan, new_plan_shortid=None, ras_object=None):
+        """
+        Create a new plan file based on a template and update the project file.
+        
+        Parameters:
+        template_plan (str): Plan number to use as template (e.g., '01')
+        new_plan_shortid (str, optional): New short identifier for the plan file
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        str: New plan number
+        
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> new_plan_number = ras_plan.clone_plan('01', new_plan_shortid='New Plan')
+        >>> print(f"New plan created with number: {new_plan_number}")
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Update plan entries without reinitializing the entire project
+        ras_obj.plan_df = ras_obj.get_prj_entries('Plan')
+
+        new_plan_num = RasPlan.get_next_number(ras_obj.plan_df['plan_number'])
+        template_plan_path = ras_obj.project_folder / f"{ras_obj.project_name}.p{template_plan}"
+        new_plan_path = ras_obj.project_folder / f"{ras_obj.project_name}.p{new_plan_num}"
+
+        def update_shortid(lines):
+            shortid_pattern = re.compile(r'^Short Identifier=(.*)$', re.IGNORECASE)
+            for i, line in enumerate(lines):
+                match = shortid_pattern.match(line.strip())
+                if match:
+                    current_shortid = match.group(1)
+                    if new_plan_shortid is None:
+                        new_shortid = (current_shortid + "_copy")[:24]
+                    else:
+                        new_shortid = new_plan_shortid[:24]
+                    lines[i] = f"Short Identifier={new_shortid}\n"
+                    break
+            return lines
+
+        # Use RasUtils to clone the file and update the short identifier
+        RasUtils.clone_file(template_plan_path, new_plan_path, update_shortid)
+
+        # Use RasUtils to update the project file
+        RasUtils.update_project_file(ras_obj.prj_file, 'Plan', new_plan_num, ras_object=ras_obj)
+
+        # Re-initialize the ras global object
+        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
+
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+
+        return new_plan_num
+
+    @staticmethod
+    @log_call
+    def clone_unsteady(template_unsteady, ras_object=None):
+        """
+        Copy unsteady flow files from a template, find the next unsteady number,
+        and update the project file accordingly.
+
+        Parameters:
+        template_unsteady (str): Unsteady flow number to be used as a template (e.g., '01')
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+        str: New unsteady flow number (e.g., '03')
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> new_unsteady_num = ras_plan.clone_unsteady('01')
+        >>> print(f"New unsteady flow file created: u{new_unsteady_num}")
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Update unsteady entries without reinitializing the entire project
+        ras_obj.unsteady_df = ras_obj.get_prj_entries('Unsteady')
+
+        new_unsteady_num = RasPlan.get_next_number(ras_obj.unsteady_df['unsteady_number'])
+        template_unsteady_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{template_unsteady}"
+        new_unsteady_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{new_unsteady_num}"
+
+        # Use RasUtils to clone the file
+        RasUtils.clone_file(template_unsteady_path, new_unsteady_path)
+
+        # Copy the corresponding .hdf file if it exists
+        template_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{template_unsteady}.hdf"
+        new_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.u{new_unsteady_num}.hdf"
+        if template_hdf_path.exists():
+            shutil.copy(template_hdf_path, new_hdf_path)
+
+        # Use RasUtils to update the project file
+        RasUtils.update_project_file(ras_obj.prj_file, 'Unsteady', new_unsteady_num, ras_object=ras_obj)
+
+        # Re-initialize the ras global object
+        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
+
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+
+        return new_unsteady_num
+
+
+    @staticmethod
+    @log_call
+    def clone_steady(template_flow, ras_object=None):
+        """
+        Copy steady flow files from a template, find the next flow number,
+        and update the project file accordingly.
+        
+        Parameters:
+        template_flow (str): Flow number to be used as a template (e.g., '01')
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        str: New flow number (e.g., '03')
+
+        Example:
+        >>> ras_plan = RasPlan()
+        >>> new_flow_num = ras_plan.clone_steady('01')
+        >>> print(f"New steady flow file created: f{new_flow_num}")
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Update flow entries without reinitializing the entire project
+        ras_obj.flow_df = ras_obj.get_prj_entries('Flow')
+
+        new_flow_num = RasPlan.get_next_number(ras_obj.flow_df['flow_number'])
+        template_flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.f{template_flow}"
+        new_flow_path = ras_obj.project_folder / f"{ras_obj.project_name}.f{new_flow_num}"
+
+        # Use RasUtils to clone the file
+        RasUtils.clone_file(template_flow_path, new_flow_path)
+
+        # Use RasUtils to update the project file
+        RasUtils.update_project_file(ras_obj.prj_file, 'Flow', new_flow_num, ras_object=ras_obj)
+
+        # Re-initialize the ras global object
+        ras_obj.initialize(ras_obj.project_folder, ras_obj.ras_exe_path)
+        
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+        
+        return new_flow_num
+
+    @staticmethod
+    @log_call
+    def clone_geom(template_geom, ras_object=None):
+        """
+        Copy geometry files from a template, find the next geometry number,
+        and update the project file accordingly.
+        
+        Parameters:
+        template_geom (str): Geometry number to be used as a template (e.g., '01')
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+        
+        Returns:
+        str: New geometry number (e.g., '03')
+
+        Note:
+            This function updates the ras object's dataframes after modifying the project structure.
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Update geometry entries without reinitializing the entire project
+        ras_obj.geom_df = ras_obj.get_prj_entries('Geom')
+
+        new_geom_num = RasPlan.get_next_number(ras_obj.geom_df['geom_number'])
+        template_geom_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{template_geom}"
+        new_geom_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{new_geom_num}"
+
+        # Use RasUtils to clone the file
+        RasUtils.clone_file(template_geom_path, new_geom_path)
+
+        # Handle HDF file copy
+        template_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{template_geom}.hdf"
+        new_hdf_path = ras_obj.project_folder / f"{ras_obj.project_name}.g{new_geom_num}.hdf"
+        if template_hdf_path.is_file():
+            RasUtils.clone_file(template_hdf_path, new_hdf_path)
+
+        # Use RasUtils to update the project file
+        RasUtils.update_project_file(ras_obj.prj_file, 'Geom', new_geom_num, ras_object=ras_obj)
+
+        # Update all dataframes in the ras object
+        ras_obj.plan_df = ras_obj.get_plan_entries()
+        ras_obj.geom_df = ras_obj.get_geom_entries()
+        ras_obj.flow_df = ras_obj.get_flow_entries()
+        ras_obj.unsteady_df = ras_obj.get_unsteady_entries()
+
+        return new_geom_num
+
+    @staticmethod
+    @log_call
+    def get_next_number(existing_numbers):
+        """
+        Determine the next available number from a list of existing numbers.
+        
+        Parameters:
+        existing_numbers (list): List of existing numbers as strings
+        
+        Returns:
+        str: Next available number as a zero-padded string
+        
+        Example:
+        >>> existing_numbers = ['01', '02', '04']
+        >>> RasPlan.get_next_number(existing_numbers)
+        '03'
+        >>> existing_numbers = ['01', '02', '03']
+        >>> RasPlan.get_next_number(existing_numbers)
+        '04'
+        """
+        existing_numbers = sorted(int(num) for num in existing_numbers)
+        next_number = 1
+        for num in existing_numbers:
+            if num == next_number:
+                next_number += 1
+            else:
+                break
+        return f"{next_number:02d}"
+
+    @staticmethod
+    @log_call
+    def get_plan_value(
+        plan_number_or_path: Union[str, Path],
+        key: str,
+        ras_object=None
+    ) -> Any:
+        """
+        Retrieve a specific value from a HEC-RAS plan file.
+
+        Parameters:
+        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
+        key (str): The key to retrieve from the plan file
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Returns:
+        Any: The value associated with the specified key
+
+        Raises:
+        ValueError: If the plan file is not found
+        IOError: If there's an error reading the plan file
+
+        Available keys and their expected types:
+        - 'Computation Interval' (str): Time value for computational time step (e.g., '5SEC', '2MIN')
+        - 'DSS File' (str): Name of the DSS file used
+        - 'Flow File' (str): Name of the flow input file
+        - 'Friction Slope Method' (int): Method selection for friction slope (e.g., 1, 2)
+        - 'Geom File' (str): Name of the geometry input file
+        - 'Mapping Interval' (str): Time interval for mapping output
+        - 'Plan File' (str): Name of the plan file
+        - 'Plan Title' (str): Title of the simulation plan
+        - 'Program Version' (str): Version number of HEC-RAS
+        - 'Run HTab' (int): Flag to run HTab module (-1 or 1)
+        - 'Run Post Process' (int): Flag to run post-processing (-1 or 1)
+        - 'Run Sediment' (int): Flag to run sediment transport module (0 or 1)
+        - 'Run UNET' (int): Flag to run unsteady network module (-1 or 1)
+        - 'Run WQNET' (int): Flag to run water quality module (0 or 1)
+        - 'Short Identifier' (str): Short name or ID for the plan
+        - 'Simulation Date' (str): Start and end dates/times for simulation
+        - 'UNET D1 Cores' (int): Number of cores used in 1D calculations
+        - 'UNET D2 Cores' (int): Number of cores used in 2D calculations
+        - 'PS Cores' (int): Number of cores used in parallel simulation
+        - 'UNET Use Existing IB Tables' (int): Flag for using existing internal boundary tables (-1, 0, or 1)
+        - 'UNET 1D Methodology' (str): 1D calculation methodology
+        - 'UNET D2 Solver Type' (str): 2D solver type
+        - 'UNET D2 Name' (str): Name of the 2D area
+        - 'Run RASMapper' (int): Flag to run RASMapper for floodplain mapping (-1 for off, 0 for on)
+        
+        Note: 
+        Writing Multi line keys like 'Description' are not supported by this function.
+
+        Example:
+        >>> computation_interval = RasPlan.get_plan_value("01", "Computation Interval")
+        >>> print(f"Computation interval: {computation_interval}")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        supported_plan_keys = {
+            'Description', 'Computation Interval', 'DSS File', 'Flow File', 'Friction Slope Method',
+            'Geom File', 'Mapping Interval', 'Plan File', 'Plan Title', 'Program Version',
+            'Run HTab', 'Run Post Process', 'Run Sediment', 'Run UNET', 'Run WQNET',
+            'Short Identifier', 'Simulation Date', 'UNET D1 Cores', 'UNET D2 Cores', 'PS Cores',
+            'UNET Use Existing IB Tables', 'UNET 1D Methodology', 'UNET D2 Solver Type', 
+            'UNET D2 Name', 'Run RASMapper', 'Run HTab', 'Run UNET'
+        }
+
+        if key not in supported_plan_keys:
+            logger = logging.getLogger(__name__)
+            logger.warning(f"Unknown key: {key}. Valid keys are: {', '.join(supported_plan_keys)}\n Add more keys and explanations in get_plan_value() as needed.")
+
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
+            if plan_file_path is None or not Path(plan_file_path).exists():
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        try:
+            with open(plan_file_path, 'r') as file:
+                content = file.read()
+        except IOError as e:
+            logger = logging.getLogger(__name__)
+            logger.error(f"Error reading plan file {plan_file_path}: {e}")
+            raise
+
+        # Handle core settings specially to convert to integers
+        core_keys = {'UNET D1 Cores', 'UNET D2 Cores', 'PS Cores'}
+        if key in core_keys:
+            pattern = f"{key}=(.*)"
+            match = re.search(pattern, content)
+            if match:
+                try:
+                    return int(match.group(1).strip())
+                except ValueError:
+                    logger = logging.getLogger(__name__)
+                    logger.error(f"Could not convert {key} value to integer")
+                    return None
+            else:
+                logger = logging.getLogger(__name__)
+                logger.error(f"Key '{key}' not found in the plan file.")
+                return None
+        elif key == 'Description':
+            match = re.search(r'Begin DESCRIPTION(.*?)END DESCRIPTION', content, re.DOTALL)
+            return match.group(1).strip() if match else None
+        else:
+            pattern = f"{key}=(.*)"
+            match = re.search(pattern, content)
+            if match:
+                return match.group(1).strip()
+            else:
+                logger = logging.getLogger(__name__)
+                logger.error(f"Key '{key}' not found in the plan file.")
+                return None
+
+
+#  NEW FUNCTIONS THAT NEED TESTING AND EXAMPLES
+
+
+    @staticmethod
+    @log_call
+    def update_run_flags(
+        plan_number_or_path: Union[str, Path],
+        geometry_preprocessor: bool = None,
+        unsteady_flow_simulation: bool = None,
+        run_sediment: bool = None,
+        post_processor: bool = None,
+        floodplain_mapping: bool = None,
+        ras_object=None
+    ) -> None:
+        """
+        Update the run flags in a HEC-RAS plan file.
+
+        Parameters:
+        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
+        geometry_preprocessor (bool, optional): Flag for Geometry Preprocessor
+        unsteady_flow_simulation (bool, optional): Flag for Unsteady Flow Simulation
+        run_sediment (bool, optional): Flag for run_sediment
+        post_processor (bool, optional): Flag for Post Processor
+        floodplain_mapping (bool, optional): Flag for Floodplain Mapping
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Raises:
+        ValueError: If the plan file is not found
+        IOError: If there's an error reading or writing the plan file
+
+        Example:
+        >>> RasPlan.update_run_flags("01", geometry_preprocessor=True, unsteady_flow_simulation=True, run_sediment=False, post_processor=True, floodplain_mapping=False)
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
+            if plan_file_path is None or not Path(plan_file_path).exists():
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        flag_mapping = {
+            'geometry_preprocessor': ('Run HTab', geometry_preprocessor),
+            'unsteady_flow_simulation': ('Run UNet', unsteady_flow_simulation),
+            'run_sediment': ('Run run_sediment', run_sediment),
+            'post_processor': ('Run PostProcess', post_processor),
+            'floodplain_mapping': ('Run RASMapper', floodplain_mapping)
+        }
+
+        try:
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+
+            for i, line in enumerate(lines):
+                for key, (file_key, value) in flag_mapping.items():
+                    if value is not None and line.strip().startswith(file_key):
+                        lines[i] = f"{file_key}= {1 if value else 0}\n"
+
+            with open(plan_file_path, 'w') as file:
+                file.writelines(lines)
+
+            logger = logging.getLogger(__name__)
+            logger.info(f"Successfully updated run flags in plan file: {plan_file_path}")
+
+        except IOError as e:
+            logger = logging.getLogger(__name__)
+            logger.error(f"Error updating run flags in plan file {plan_file_path}: {e}")
+            raise
+
+
+
+    @staticmethod
+    @log_call
+    def update_plan_intervals(
+        plan_number_or_path: Union[str, Path],
+        computation_interval: Optional[str] = None,
+        output_interval: Optional[str] = None,
+        instantaneous_interval: Optional[str] = None,
+        mapping_interval: Optional[str] = None,
+        ras_object=None
+    ) -> None:
+        """
+        Update the computation and output intervals in a HEC-RAS plan file.
+
+        Parameters:
+        plan_number_or_path (Union[str, Path]): The plan number (1 to 99) or full path to the plan file
+        computation_interval (Optional[str]): The new computation interval. Valid entries include:
+            '1SEC', '2SEC', '3SEC', '4SEC', '5SEC', '6SEC', '10SEC', '15SEC', '20SEC', '30SEC',
+            '1MIN', '2MIN', '3MIN', '4MIN', '5MIN', '6MIN', '10MIN', '15MIN', '20MIN', '30MIN',
+            '1HOUR', '2HOUR', '3HOUR', '4HOUR', '6HOUR', '8HOUR', '12HOUR', '1DAY'
+        output_interval (Optional[str]): The new output interval. Valid entries are the same as computation_interval.
+        instantaneous_interval (Optional[str]): The new instantaneous interval. Valid entries are the same as computation_interval.
+        mapping_interval (Optional[str]): The new mapping interval. Valid entries are the same as computation_interval.
+        ras_object (RasPrj, optional): Specific RAS object to use. If None, uses the global ras instance.
+
+        Raises:
+        ValueError: If the plan file is not found or if an invalid interval is provided
+        IOError: If there's an error reading or writing the plan file
+
+        Note: This function does not check if the intervals are equal divisors. Ensure you use valid values from HEC-RAS.
+
+        Example:
+        >>> RasPlan.update_plan_intervals("01", computation_interval="5SEC", output_interval="1MIN", instantaneous_interval="1HOUR", mapping_interval="5MIN")
+        >>> RasPlan.update_plan_intervals("/path/to/plan.p01", computation_interval="10SEC", output_interval="30SEC")
+        """
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object=ras_obj)
+            if plan_file_path is None or not Path(plan_file_path).exists():
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        valid_intervals = [
+            '1SEC', '2SEC', '3SEC', '4SEC', '5SEC', '6SEC', '10SEC', '15SEC', '20SEC', '30SEC',
+            '1MIN', '2MIN', '3MIN', '4MIN', '5MIN', '6MIN', '10MIN', '15MIN', '20MIN', '30MIN',
+            '1HOUR', '2HOUR', '3HOUR', '4HOUR', '6HOUR', '8HOUR', '12HOUR', '1DAY'
+        ]
+
+        interval_mapping = {
+            'Computation Interval': computation_interval,
+            'Output Interval': output_interval,
+            'Instantaneous Interval': instantaneous_interval,
+            'Mapping Interval': mapping_interval
+        }
+
+        try:
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+
+            for i, line in enumerate(lines):
+                for key, value in interval_mapping.items():
+                    if value is not None:
+                        if value.upper() not in valid_intervals:
+                            raise ValueError(f"Invalid {key}: {value}. Must be one of {valid_intervals}")
+                        if line.strip().startswith(key):
+                            lines[i] = f"{key}={value.upper()}\n"
+
+            with open(plan_file_path, 'w') as file:
+                file.writelines(lines)
+
+            logger = logging.getLogger(__name__)
+            logger.info(f"Successfully updated intervals in plan file: {plan_file_path}")
+
+        except IOError as e:
+            logger = logging.getLogger(__name__)
+            logger.error(f"Error updating intervals in plan file {plan_file_path}: {e}")
+            raise
+
+
+    @log_call
+    def update_plan_description(plan_number_or_path: Union[str, Path], description: str, ras_object: Optional['RasPrj'] = None) -> None:
+        """
+        Update the description block in a HEC-RAS plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or full path to the plan file
+            description (str): The new description text to set
+            ras_object (Optional[RasPrj]): Specific RAS object to use. If None, uses the global ras instance.
+
+        Raises:
+            ValueError: If the plan file is not found
+            IOError: If there's an error reading or writing the plan file
+        """
+        logger = get_logger(__name__)
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_object)
+            if not plan_file_path.exists():
+                logger.error(f"Plan file not found: {plan_file_path}")
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        try:
+            with open(plan_file_path, 'r') as file:
+                content = file.read()
+
+            # Find the description block
+            desc_pattern = r'Begin DESCRIPTION.*?END DESCRIPTION'
+            new_desc_block = f'Begin DESCRIPTION\n{description}\nEND DESCRIPTION'
+
+            if re.search(desc_pattern, content, re.DOTALL):
+                # Replace existing description block
+                new_content = re.sub(desc_pattern, new_desc_block, content, flags=re.DOTALL)
+            else:
+                # Add new description block at the start of the file
+                new_content = new_desc_block + '\n' + content
+
+            # Write the updated content back to the file
+            with open(plan_file_path, 'w') as file:
+                file.write(new_content)
+
+            logger.info(f"Updated description in plan file: {plan_file_path}")
+
+            # Update the dataframes in the RAS object to reflect changes
+            if ras_object:
+                ras_object.plan_df = ras_object.get_plan_entries()
+                ras_object.geom_df = ras_object.get_geom_entries()
+                ras_object.flow_df = ras_object.get_flow_entries()
+                ras_object.unsteady_df = ras_object.get_unsteady_entries()
+
+        except IOError as e:
+            logger.error(f"Error updating plan description in {plan_file_path}: {e}")
+            raise
+        except Exception as e:
+            logger.error(f"Unexpected error updating plan description: {e}")
+            raise
+
+    @staticmethod
+    @log_call
+    def read_plan_description(plan_number_or_path: Union[str, Path], ras_object: Optional['RasPrj'] = None) -> str:
+        """
+        Read the description from the plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
+
+        Returns:
+            str: The description from the plan file.
+
+        Raises:
+            ValueError: If the plan file is not found.
+            IOError: If there's an error reading from the plan file.
+        """
+        logger = logging.getLogger(__name__)
+
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object)
+            if plan_file_path is None or not Path(plan_file_path).exists():
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        try:
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+        except IOError as e:
+            logger.error(f"Error reading plan file {plan_file_path}: {e}")
+            raise
+
+        description_lines = []
+        in_description = False
+        description_found = False
+        for line in lines:
+            if line.strip() == "BEGIN DESCRIPTION:":
+                in_description = True
+                description_found = True
+            elif line.strip() == "END DESCRIPTION:":
+                break
+            elif in_description:
+                description_lines.append(line.strip())
+
+        if not description_found:
+            logger.warning(f"No description found in plan file: {plan_file_path}")
+            return ""
+
+        description = '\n'.join(description_lines)
+        logger.info(f"Read description from plan file: {plan_file_path}")
+        return description
+
+
+
+
+    @staticmethod
+    @log_call
+    def update_simulation_date(plan_number_or_path: Union[str, Path], start_date: datetime, end_date: datetime, ras_object: Optional['RasPrj'] = None) -> None:
+        """
+        Update the simulation date for a given plan.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            start_date (datetime): The start date and time for the simulation.
+            end_date (datetime): The end date and time for the simulation.
+            ras_object (Optional['RasPrj']): The RAS project object. Defaults to None.
+
+        Raises:
+            ValueError: If the plan file is not found or if there's an error updating the file.
+        """
+
+        # Get the plan file path
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasPlan.get_plan_path(plan_number_or_path, ras_object)
+            if plan_file_path is None or not Path(plan_file_path).exists():
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        # Format the dates
+        formatted_date = f"{start_date.strftime('%d%b%Y').upper()},{start_date.strftime('%H%M')},{end_date.strftime('%d%b%Y').upper()},{end_date.strftime('%H%M')}"
+
+        try:
+            # Read the file
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+
+            # Update the Simulation Date line
+            updated = False
+            for i, line in enumerate(lines):
+                if line.startswith("Simulation Date="):
+                    lines[i] = f"Simulation Date={formatted_date}\n"
+                    updated = True
+                    break
+
+            # If Simulation Date line not found, add it at the end
+            if not updated:
+                lines.append(f"Simulation Date={formatted_date}\n")
+
+            # Write the updated content back to the file
+            with open(plan_file_path, 'w') as file:
+                file.writelines(lines)
+
+            logger.info(f"Updated simulation date in plan file: {plan_file_path}")
+
+        except IOError as e:
+            logger.error(f"Error updating simulation date in plan file {plan_file_path}: {e}")
+            raise ValueError(f"Error updating simulation date: {e}")
+
+        # Refresh RasPrj dataframes
+        if ras_object:
+            ras_object.plan_df = ras_object.get_plan_entries()
+            ras_object.unsteady_df = ras_object.get_unsteady_entries()
+
+    @staticmethod
+    @log_call
+    def get_shortid(plan_number_or_path: Union[str, Path], ras_object=None) -> str:
+        """
+        Get the Short Identifier from a HEC-RAS plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
+
+        Returns:
+            str: The Short Identifier from the plan file.
+
+        Raises:
+            ValueError: If the plan file is not found.
+            IOError: If there's an error reading from the plan file.
+
+        Example:
+            >>> shortid = RasPlan.get_shortid('01')
+            >>> print(f"Plan's Short Identifier: {shortid}")
+        """
+        logger = get_logger(__name__)
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Get the Short Identifier using get_plan_value
+        shortid = RasPlan.get_plan_value(plan_number_or_path, "Short Identifier", ras_obj)
+        
+        if shortid is None:
+            logger.warning(f"Short Identifier not found in plan: {plan_number_or_path}")
+            return ""
+        
+        logger.info(f"Retrieved Short Identifier: {shortid}")
+        return shortid
+
+    @staticmethod
+    @log_call
+    def set_shortid(plan_number_or_path: Union[str, Path], new_shortid: str, ras_object=None) -> None:
+        """
+        Set the Short Identifier in a HEC-RAS plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            new_shortid (str): The new Short Identifier to set (max 24 characters).
+            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
+
+        Raises:
+            ValueError: If the plan file is not found or if new_shortid is too long.
+            IOError: If there's an error updating the plan file.
+
+        Example:
+            >>> RasPlan.set_shortid('01', 'NewShortIdentifier')
+        """
+        logger = get_logger(__name__)
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Ensure new_shortid is not too long (HEC-RAS limits short identifiers to 24 characters)
+        if len(new_shortid) > 24:
+            logger.warning(f"Short Identifier too long (24 char max). Truncating: {new_shortid}")
+            new_shortid = new_shortid[:24]
+
+        # Get the plan file path
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_obj)
+            if not plan_file_path.exists():
+                logger.error(f"Plan file not found: {plan_file_path}")
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        try:
+            # Read the file
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+
+            # Update the Short Identifier line
+            updated = False
+            for i, line in enumerate(lines):
+                if line.startswith("Short Identifier="):
+                    lines[i] = f"Short Identifier={new_shortid}\n"
+                    updated = True
+                    break
+
+            # If Short Identifier line not found, add it after Plan Title
+            if not updated:
+                for i, line in enumerate(lines):
+                    if line.startswith("Plan Title="):
+                        lines.insert(i+1, f"Short Identifier={new_shortid}\n")
+                        updated = True
+                        break
+                
+                # If Plan Title not found either, add at the beginning
+                if not updated:
+                    lines.insert(0, f"Short Identifier={new_shortid}\n")
+
+            # Write the updated content back to the file
+            with open(plan_file_path, 'w') as file:
+                file.writelines(lines)
+
+            logger.info(f"Updated Short Identifier in plan file to: {new_shortid}")
+
+        except IOError as e:
+            logger.error(f"Error updating Short Identifier in plan file {plan_file_path}: {e}")
+            raise ValueError(f"Error updating Short Identifier: {e}")
+
+        # Refresh RasPrj dataframes if ras_object provided
+        if ras_object:
+            ras_object.plan_df = ras_object.get_plan_entries()
+
+    @staticmethod
+    @log_call
+    def get_plan_title(plan_number_or_path: Union[str, Path], ras_object=None) -> str:
+        """
+        Get the Plan Title from a HEC-RAS plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
+
+        Returns:
+            str: The Plan Title from the plan file.
+
+        Raises:
+            ValueError: If the plan file is not found.
+            IOError: If there's an error reading from the plan file.
+
+        Example:
+            >>> title = RasPlan.get_plan_title('01')
+            >>> print(f"Plan Title: {title}")
+        """
+        logger = get_logger(__name__)
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Get the Plan Title using get_plan_value
+        title = RasPlan.get_plan_value(plan_number_or_path, "Plan Title", ras_obj)
+        
+        if title is None:
+            logger.warning(f"Plan Title not found in plan: {plan_number_or_path}")
+            return ""
+        
+        logger.info(f"Retrieved Plan Title: {title}")
+        return title
+
+    @staticmethod
+    @log_call
+    def set_plan_title(plan_number_or_path: Union[str, Path], new_title: str, ras_object=None) -> None:
+        """
+        Set the Plan Title in a HEC-RAS plan file.
+
+        Args:
+            plan_number_or_path (Union[str, Path]): The plan number or path to the plan file.
+            new_title (str): The new Plan Title to set.
+            ras_object (Optional[RasPrj]): The RAS project object. If None, uses the global 'ras' object.
+
+        Raises:
+            ValueError: If the plan file is not found.
+            IOError: If there's an error updating the plan file.
+
+        Example:
+            >>> RasPlan.set_plan_title('01', 'Updated Plan Scenario')
+        """
+        logger = get_logger(__name__)
+        ras_obj = ras_object or ras
+        ras_obj.check_initialized()
+
+        # Get the plan file path
+        plan_file_path = Path(plan_number_or_path)
+        if not plan_file_path.is_file():
+            plan_file_path = RasUtils.get_plan_path(plan_number_or_path, ras_obj)
+            if not plan_file_path.exists():
+                logger.error(f"Plan file not found: {plan_file_path}")
+                raise ValueError(f"Plan file not found: {plan_file_path}")
+
+        try:
+            # Read the file
+            with open(plan_file_path, 'r') as file:
+                lines = file.readlines()
+
+            # Update the Plan Title line
+            updated = False
+            for i, line in enumerate(lines):
+                if line.startswith("Plan Title="):
+                    lines[i] = f"Plan Title={new_title}\n"
+                    updated = True
+                    break
+
+            # If Plan Title line not found, add it at the beginning
+            if not updated:
+                lines.insert(0, f"Plan Title={new_title}\n")
+
+            # Write the updated content back to the file
+            with open(plan_file_path, 'w') as file:
+                file.writelines(lines)
+
+            logger.info(f"Updated Plan Title in plan file to: {new_title}")
+
+        except IOError as e:
+            logger.error(f"Error updating Plan Title in plan file {plan_file_path}: {e}")
+            raise ValueError(f"Error updating Plan Title: {e}")
+
+        # Refresh RasPrj dataframes if ras_object provided
+        if ras_object:
             ras_object.plan_df = ras_object.get_plan_entries()