rapidtide 3.0a11__py3-none-any.whl → 3.0a13__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. cloud/gmscalc-HCPYA +1 -1
  2. cloud/rapidtide-HCPYA +3 -3
  3. rapidtide/Colortables.py +10 -10
  4. rapidtide/DerivativeDelay.py +211 -0
  5. rapidtide/RegressorRefiner.py +464 -0
  6. rapidtide/__init__.py +2 -1
  7. rapidtide/_version.py +1 -1
  8. rapidtide/data/examples/src/test_mlregressallt.py +32 -17
  9. rapidtide/data/examples/src/testalign +1 -1
  10. rapidtide/data/examples/src/testboth +1 -1
  11. rapidtide/data/examples/src/testcifti +11 -0
  12. rapidtide/data/examples/src/testdelayvar +13 -0
  13. rapidtide/data/examples/src/testfmri +3 -124
  14. rapidtide/data/examples/src/testglmfilt +8 -6
  15. rapidtide/data/examples/src/testhappy +1 -1
  16. rapidtide/data/examples/src/testinitdelay +19 -0
  17. rapidtide/data/examples/src/testnewrefine +49 -0
  18. rapidtide/data/examples/src/testnoiseamp +2 -2
  19. rapidtide/data/examples/src/testrefineonly +22 -0
  20. rapidtide/data/examples/src/testretro +16 -7
  21. rapidtide/data/examples/src/testretrolagtcs +1 -1
  22. rapidtide/dlfilter.py +0 -1
  23. rapidtide/fit.py +41 -9
  24. rapidtide/happy_supportfuncs.py +5 -0
  25. rapidtide/io.py +13 -2
  26. rapidtide/{glmpass.py → linfitfiltpass.py} +29 -20
  27. rapidtide/refinedelay.py +133 -55
  28. rapidtide/refineregressor.py +38 -24
  29. rapidtide/resample.py +3 -0
  30. rapidtide/scripts/{retroglm.py → delayvar.py} +2 -2
  31. rapidtide/scripts/{glmfilt.py → linfitfilt.py} +2 -2
  32. rapidtide/scripts/retroregress.py +28 -0
  33. rapidtide/scripts/stupidramtricks.py +9 -7
  34. rapidtide/simfuncfit.py +1 -1
  35. rapidtide/tests/cleanposttest +21 -0
  36. rapidtide/tests/test_delayestimation.py +3 -3
  37. rapidtide/tests/test_fastresampler.py +1 -2
  38. rapidtide/tests/test_fullrunhappy_v1.py +1 -1
  39. rapidtide/tests/test_fullrunhappy_v2.py +1 -1
  40. rapidtide/tests/test_fullrunrapidtide_v1.py +2 -2
  41. rapidtide/tests/test_fullrunrapidtide_v3.py +1 -1
  42. rapidtide/tests/test_fullrunrapidtide_v5.py +1 -1
  43. rapidtide/tests/test_fullrunrapidtide_v6.py +11 -11
  44. rapidtide/tests/{test_glmpass.py → test_linfitfiltpass.py} +9 -9
  45. rapidtide/tests/test_motionregress.py +3 -3
  46. rapidtide/tests/test_refinedelay.py +12 -12
  47. rapidtide/tidepoolTemplate.py +1 -0
  48. rapidtide/tidepoolTemplate.ui +1 -0
  49. rapidtide/tidepoolTemplate_alt.py +5 -4
  50. rapidtide/tidepoolTemplate_alt.ui +3 -2
  51. rapidtide/tidepoolTemplate_alt_qt6.py +177 -49
  52. rapidtide/tidepoolTemplate_big.py +1 -0
  53. rapidtide/tidepoolTemplate_big.ui +1 -0
  54. rapidtide/tidepoolTemplate_big_qt6.py +197 -53
  55. rapidtide/tidepoolTemplate_qt6.py +151 -39
  56. rapidtide/workflows/delayvar.py +1048 -0
  57. rapidtide/workflows/happy.py +37 -11
  58. rapidtide/workflows/happy_parser.py +4 -4
  59. rapidtide/workflows/{glmfilt.py → linfitfilt.py} +4 -4
  60. rapidtide/workflows/parser_funcs.py +10 -2
  61. rapidtide/workflows/rapidtide.py +388 -452
  62. rapidtide/workflows/rapidtide_parser.py +129 -90
  63. rapidtide/workflows/{glmfrommaps.py → regressfrommaps.py} +28 -26
  64. rapidtide/workflows/retrolagtcs.py +12 -12
  65. rapidtide/workflows/{retroglm.py → retroregress.py} +243 -141
  66. rapidtide/workflows/tidepool.py +2 -2
  67. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info}/METADATA +3 -2
  68. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info}/RECORD +72 -63
  69. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info}/WHEEL +1 -1
  70. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info}/entry_points.txt +3 -2
  71. rapidtide/data/examples/src/testoutputsize +0 -45
  72. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info/licenses}/LICENSE +0 -0
  73. {rapidtide-3.0a11.dist-info → rapidtide-3.0a13.dist-info}/top_level.txt +0 -0
@@ -1982,13 +1982,13 @@ def tidepool(args):
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  "funcmask": "p_lt_0p050_mask",
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  },
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  "lagsigma": {
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- "colormap": gen_spectrum_state(),
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+ "colormap": gen_plasma_state(),
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  "label": "Similarity width",
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  "display": True,
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  "funcmask": "p_lt_0p050_mask",
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  },
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  "MTT": {
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- "colormap": gen_spectrum_state(),
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+ "colormap": gen_plasma_state(),
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  "label": "MTT",
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  "display": extramaps,
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  "funcmask": "p_lt_0p050_mask",
@@ -1,6 +1,6 @@
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- Metadata-Version: 2.2
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+ Metadata-Version: 2.4
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  Name: rapidtide
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- Version: 3.0a11
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+ Version: 3.0a13
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  Summary: Tools for performing correlation analysis on fMRI data.
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  Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
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  Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>
@@ -58,6 +58,7 @@ Requires-Dist: myst-parser; extra == "doc"
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  Requires-Dist: numpydoc; extra == "doc"
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  Requires-Dist: sphinxcontrib-bibtex; extra == "doc"
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  Requires-Dist: tomlkit; extra == "doc"
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+ Dynamic: license-file
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  The rapidtide package
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  =====================
@@ -1,30 +1,32 @@
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  cloud/download-nda-data,sha256=HvXi0THILXhAEQBgJOAgiQ57fkrqUOJHQw7wm_0XfZ8,987
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  cloud/downloadcmd-auther,sha256=1duAStDVtLnSfZBqZfGk8CGUr_kn5NlnYwxQgUH2ekM,380
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- cloud/gmscalc-HCPYA,sha256=frR4gmsNACbvkmEv7YtyXnTwsAAFpjbwy81Pl8XYXfk,581
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+ cloud/gmscalc-HCPYA,sha256=LvsckizXGuIjmimOrLJ0_gJMrafQux9XjXzOqoRlY6g,586
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  cloud/list-rapidtide-relevant-images,sha256=s-DolKbUgoJ18blNwzX287nTaaQrenTnxzqA8rL-DlQ,5799
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  cloud/mount-and-run,sha256=x6829t-u2vH1NpjxaaES39dv393E5EIv3S0WYdgLytY,2465
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- cloud/rapidtide-HCPYA,sha256=e3GJeE2_O_x-eGqvPJ6qWp6g4T_askxrsM-PTpRdEjc,949
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+ cloud/rapidtide-HCPYA,sha256=kqW8ENbOQhvVqZGz-HqiVbrbzHy4cfyy1rk8ejpJor0,963
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  cloud/rapidtide-cloud-test,sha256=SATOwGo4QYLvt-6hE0e3wyK9JjuDU5XzfLrfMoybvcY,466
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  cloud/simple-cp-test,sha256=5ef8wmLfcKdny59BV6_DnAPj7O_mi0rOHdFZVN2iiLA,421
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- rapidtide/Colortables.py,sha256=AQC-aHwgemxZNKtf8du7Oe08IKKxuOsUF1bDEdSyleY,5804
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+ rapidtide/Colortables.py,sha256=Qok5h6-U6sVl0zhITI8D0Uxtp3zmyQv4OCiU-6sNTnM,5814
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+ rapidtide/DerivativeDelay.py,sha256=ODMwsY3of7rfH0IIqKgCxntTQGeNNSNoGMjKpIluHTg,7200
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  rapidtide/OrthoImageItem.py,sha256=uN-fMX4vVB00-AFoUnfOXXq1qjLXruzOqYttNJYpIpM,21669
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  rapidtide/RapidtideDataset.py,sha256=BEGznVDvLzL1Cd9TtuwicCYXcVug8hX1t-6qnEjMEDg,52239
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- rapidtide/__init__.py,sha256=DrceP8tLrtTWV8PwS7YAgw6NuFkKAREFM7FsTaZob-s,96
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- rapidtide/_version.py,sha256=cTDBv24D1_YgVeFU_x3GvlNlQD-clOji6E0Sb34osJY,24506
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+ rapidtide/RegressorRefiner.py,sha256=Cp5hGsEO_KYiTxbtZCLBTsgi5gjKd3xoP_A3TaQtF_E,17232
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+ rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
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+ rapidtide/_version.py,sha256=w4vUyi4REvA9LeJul_uv8AcuFACKR4WIGQRoh2xocL8,24506
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  rapidtide/calcandfitcorrpairs.py,sha256=UmCp9eSU--HCYd7frdO9ctnMeDK32D1Eb53b1hdzw9w,7397
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  rapidtide/calccoherence.py,sha256=SjSWcqbyATKu5Hya5LgRCTfq2w9l7G9L_kZbol802sk,4512
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  rapidtide/calcnullsimfunc.py,sha256=_L5Gxr1CI0GKmGmEjHzrYNufAzDchDsruYCzboSgw3s,7150
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  rapidtide/calcsimfunc.py,sha256=Jw_589HsH4ErYzI54jPezSRzBW7_xjxc71sstDbalng,5198
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  rapidtide/correlate.py,sha256=iZzJa2QV7Le1_Vr9l8Zj2QS0_ZV-EXKtWkOAcICI8ec,36266
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- rapidtide/dlfilter.py,sha256=8hmOCyGSMQqT2p_rAwOrvs2FaafqbQBEpvFkHAKlxew,55505
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+ rapidtide/dlfilter.py,sha256=4fxOd3iXj7X_fvHYZIuS4N5riadtsOfXVypg1rU5ipU,55504
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  rapidtide/externaltools.py,sha256=YhxuSn5z3v5E7PzB07yftXJGw95rs95Nmxbq4Wo2fhU,3965
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  rapidtide/fMRIData_class.py,sha256=TrR-MyIBEzbUgUq8oQVmjkddnrhxeN_rHlX-En0p4Ao,5102
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  rapidtide/filter.py,sha256=Ci62Vcw_qKX--Hzut9kb6XmBLjEe773JyGkGJtnH2g4,71773
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- rapidtide/fit.py,sha256=lAzLc19VAhq3QJFSbaCbAWCNDefxSCsJfjW5WLHABMk,67130
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- rapidtide/glmpass.py,sha256=Krdgj-pP2Vtelr6qYtMgh2u2C-9thJGwp2FKiEzo-7M,15681
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- rapidtide/happy_supportfuncs.py,sha256=3AuKqhWApvSiHUJS8YGyuuB66pEuodd6rmOp83JEKiU,47839
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+ rapidtide/fit.py,sha256=GA7v2fuQnSztsUCFdqEbAzdXRyLUXI-aQw_E31WvsOs,68081
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+ rapidtide/happy_supportfuncs.py,sha256=z9VTliXvZoQEjU6FSaPk6etYUB7KSFCQbdzMIAVx6ik,47937
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  rapidtide/helper_classes.py,sha256=jMS1SIU8YFZrZ10s3kOwbT0139CtTG3DLkJoyuDiiNQ,51401
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- rapidtide/io.py,sha256=8J57TnfsYtOHJ1fSVGyy4Wnz5tH6djS-d7-i22-M-2c,74421
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+ rapidtide/io.py,sha256=tEw1E1Gsxu-_A1spMz1wU98d9R5xZof06qiGvYr2sEQ,74789
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+ rapidtide/linfitfiltpass.py,sha256=mzG-sOVtBR0nx3M8nknNUm9yRv2dqPukIqQXW8D3sLc,16095
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  rapidtide/makelaggedtcs.py,sha256=GsJ3svPSRJIHzJ9F5ZpT0eW3k6rIUCGXgq4o-sK4R-E,3889
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  rapidtide/maskutil.py,sha256=noqFZzAvyAy0ZzEa1nmEIGzWA0zaPoNSIP3ck1cFKcE,6089
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  rapidtide/miscmath.py,sha256=Wj3GXNkXbvGlsdxYGUMTZ3H5a3a1uhfTWZV73XtUYx4,14044
@@ -32,20 +34,20 @@ rapidtide/multiproc.py,sha256=Ri40ebUkxofKwqIKuZ0_FuQvp4uWFPE8yWMOau3TJ78,6238
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  rapidtide/patchmatch.py,sha256=ZhGuJSwd_UBBJERuABLWzE-HvHLtMgP_Ep4-jq3q1rI,20643
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  rapidtide/peakeval.py,sha256=4wboYOtGX1q9p2LmAX_eXcw1YsDWhzlGd-hMVQaso9Y,5198
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  rapidtide/qualitycheck.py,sha256=VL4vA4IRoTPZ4fJHwKrYXsJDmsEs4qUV9xvxjvKpchA,11917
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- rapidtide/refinedelay.py,sha256=lvLGzulhJLkHEXBmC6zBXiHg2UBfrG4yPTczE2qq1Zs,9903
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- rapidtide/refineregressor.py,sha256=-_2Vm5YBkIwVkOe8oGCjJP4H3fsn8b4FREKf2Ji26Wo,22375
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- rapidtide/resample.py,sha256=wM3Ssq71EhAxNYcCmL-5-n6vMgx63S5g9nKOZBOWSLw,30473
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- rapidtide/simfuncfit.py,sha256=YEgt-NYp0rVCCcGqnu8FFIQaNLqAJ_6CMg86_ShYHKg,11833
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+ rapidtide/refinedelay.py,sha256=ZHINjXS352WDwFMW79m4YHC_mto8m8-bVOO08EQXEtM,13053
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+ rapidtide/refineregressor.py,sha256=50CXj57k5gccTqfn6tugLM1UxSvr_ImPDch9YwMkL5o,22950
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+ rapidtide/resample.py,sha256=RA9Rf9Z0jl1nhz4aV5LOlJCm_PVannuBdYZNe3jwECU,30592
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+ rapidtide/simfuncfit.py,sha256=ypGBraJCk5ParOc-ll9-iVDQHh9OYXqGd3SaN9AoU5Y,11837
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  rapidtide/stats.py,sha256=_UnjWwXo6LjYvaLfwrRhfdQ8wBXXuiuWnTqcld-myDA,29356
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- rapidtide/tidepoolTemplate.py,sha256=KFG3UVA2xDKYlxUrboKSFdSZEdMJMpDhXwuq3uw6usg,46225
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- rapidtide/tidepoolTemplate.ui,sha256=srYs8VZWgWFgTTJW6sTpzWYch_7iU-xgpTuXHCgefwU,46651
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- rapidtide/tidepoolTemplate_alt.py,sha256=tKHsAs1eeP9dyTs6LjsJ5GeF1eLfQW7XDgSvacUfT3M,51839
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- rapidtide/tidepoolTemplate_alt.ui,sha256=PKWsr59XCUAMeKtQliV2AxIo4_shgjedCCuwLKzhias,52212
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- rapidtide/tidepoolTemplate_alt_qt6.py,sha256=Jef-eekrhR_UJxOttBzz9uxeRoP8CMVcfAQNR7bwD70,52494
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- rapidtide/tidepoolTemplate_big.py,sha256=uNWwEeVOdGgOwVIrYXCQE30D2jLxjfrXesBAL5Q42Hk,64978
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- rapidtide/tidepoolTemplate_big.ui,sha256=tiOtHirD69_MMFPP4Df4C5JEBoY6v7da-C5xW7-5WOw,65527
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- rapidtide/tidepoolTemplate_big_qt6.py,sha256=hzXmpJtEf6M6Zh_OrYfnkEc54AuKFkEU494uN646_dg,65801
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- rapidtide/tidepoolTemplate_qt6.py,sha256=8xY0nuF9nEfeQWQPRuglxw6nRaKhIKkLMMIvELJRXSg,46872
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+ rapidtide/tidepoolTemplate.py,sha256=YK6vXIXfgAq5OHa67RjvL0MhMJIIgjmDpxQY16Cwnl4,46252
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+ rapidtide/tidepoolTemplate.ui,sha256=WX_ppn1meIWXl_yw0bkSmrsPw_YpylQzPJlf8XYob5w,46676
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+ rapidtide/tidepoolTemplate_alt.py,sha256=09p8J2a5xJEm8y3VNTCYOHOdDBsFx2W838RgYTnK-r4,51866
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+ rapidtide/tidepoolTemplate_alt.ui,sha256=PMvFcSKJKfGboq-YOntzGqwIg1xLHfCnbXEW0ooI5A0,52237
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+ rapidtide/tidepoolTemplate_alt_qt6.py,sha256=x6xqh1nC89GgFlmozjSPfrjJnjZ1S1t8dUoSp7kZ1Cs,54016
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+ rapidtide/tidepoolTemplate_big.py,sha256=60RdSehVFi2V38G_8ByhGILfCGf4g6lSnKV42HdCAoQ,65005
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+ rapidtide/tidepoolTemplate_big.ui,sha256=lJYAJHJA8iJYJTlnq5GllkW-VMRrpLhDL4kskwU14Xw,65552
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+ rapidtide/tidepoolTemplate_big_qt6.py,sha256=yXmFpoO5exhbXHtjKVE7AG-oi7tB6QOCFW5RRO0z6Ls,67499
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+ rapidtide/tidepoolTemplate_qt6.py,sha256=qBgufkyHsmEZ_HPgAu8LLbztlwlyfm6KcRfJ9qVFbXc,48198
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@@ -53,29 +55,33 @@ rapidtide/wiener2.py,sha256=CSsNRqeSCrCJgD-FqOJ8RVoGKbdb-PW8e0cQfD3QyfY,3746
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- rapidtide/data/examples/src/test_mlregressallt.py,sha256=bxvNtYMDl2LE3G8WtTyHG_M9VlGJo-I2PPjPo8qS_Tk,1442
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+ rapidtide/data/examples/src/test_mlregressallt.py,sha256=dDSoovevThiwvVb9YyME8WCBFLgObec5nWNYJRNhVmQ,2016
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- rapidtide/data/examples/src/testalign,sha256=qgT6Tv1zAAbV3dDF79I51enqSKk3ryH8gRJ8u1ieNHQ,1562
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- rapidtide/data/examples/src/testboth,sha256=6MhJZklqubQxs96ECuynHHfaiDkdGf9Rwy7FKI6lzE8,451
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+ rapidtide/data/examples/src/testboth,sha256=ITAqA3XOC9duFRoBtZgGL9pLnh7Po43i8qjUImSq_eo,455
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+ rapidtide/data/examples/src/testcifti,sha256=Nw4UMzkh1oFdW4FuAznuOR9hAr2KJuPF86gZnqqJylU,265
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+ rapidtide/data/examples/src/testdelayvar,sha256=x2-miMKk3AAYPC16C4gelWrLyc3p5oDA6m884NzRVAE,301
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- rapidtide/data/examples/src/testfmri,sha256=vLftCOpC0rWy0QNNv-7FdWvDQLBRPOYIEYlViXn2r8g,3161
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+ rapidtide/data/examples/src/testfmri,sha256=7gdvJYU2ee0rz4k2PG52JQs-17-T5HyixdLEMeqlzEI,237
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  rapidtide/workflows/localflow.py,sha256=TvdoUdz_1zIn79UsaPWDPCgrRzy_Yp8wHi7ASdVA1XY,23542
294
302
  rapidtide/workflows/mergequality.py,sha256=HncFLHRUGV_oNeVZLRKTG90XcQeYfl1LaMZohQJ2wk8,15609
295
303
  rapidtide/workflows/niftidecomp.py,sha256=_v4eLxPyQ5YKKjHB8vvqV47Uh3ITcQV4PRq2ks6tpqQ,15441
296
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  rapidtide/workflows/niftistats.py,sha256=jlvdmiat9OOxiWn31UNsxLd5s1_zbFsqU8wNrQ9uLYU,18231
297
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  rapidtide/workflows/pairproc.py,sha256=B0TabhgYZiH4oMqi3n28a2UelaUylrRsHig8zLl3hFs,6584
298
306
  rapidtide/workflows/pairwisemergenifti.py,sha256=liE-Jkeh98JXTHU2eQFozuTOhkeMNaFaJ0wGtG1QiyQ,3751
299
- rapidtide/workflows/parser_funcs.py,sha256=wDghbN0jMIuMIoKGr-OxLkfvYVO10uNl35yS7PMgKwY,27609
307
+ rapidtide/workflows/parser_funcs.py,sha256=GIvkJ9fgk7Xkf6vE3M-sQfcCDMJDFjeCnTuI3nAlCMY,28163
300
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  rapidtide/workflows/physiofreq.py,sha256=cpBaRTS1U4luBfuqtDI3S-lNkNmcIiFviTxMXba4P-E,5194
301
309
  rapidtide/workflows/pixelcomp.py,sha256=Z4MOr6b0MVqSvIvJMzV-DubYBgAicRSw47y4_t5vSX4,6545
302
310
  rapidtide/workflows/plethquality.py,sha256=ZNkMS6cGkM2UG796KwCrhiCC7mzEmFt62Nxy1-LsV3E,4021
303
311
  rapidtide/workflows/polyfitim.py,sha256=18pCkdk176_hyWdCgRe-B4AEP0wjHheWdPq25SsKy6w,10184
304
312
  rapidtide/workflows/proj2flow.py,sha256=MWtf0eTyQ7MfIbWRup4s6TLuk-vKbYgWkSZC9BOBYcM,7290
305
313
  rapidtide/workflows/rankimage.py,sha256=twZsGJaVd0raffzKlI0Tupy4DJxHyhBv8WqIUNEtiNM,3482
306
- rapidtide/workflows/rapidtide.py,sha256=fuc4dXb5_FogrkkbPknQYPw_mtULtQfW-aypue-I1k0,177741
314
+ rapidtide/workflows/rapidtide.py,sha256=_kAAMIaOS8kpU0AI9ynWQdZ3eN-R7Ad0TSQo8yfhbxU,174391
307
315
  rapidtide/workflows/rapidtide2std.py,sha256=wGNwyAPnaI3sCG14ORWmlFQRgXmNn6uVVlPirwk1URg,10413
308
- rapidtide/workflows/rapidtide_parser.py,sha256=dolWcymDQ5w6j9BVotP1Dv9IimjIFRIn187ec2L48Tk,77445
316
+ rapidtide/workflows/rapidtide_parser.py,sha256=k42DInCaHsIkmulZdryVd0xkVrfK2_pJrfVtAdfNcpI,79435
317
+ rapidtide/workflows/regressfrommaps.py,sha256=UvzvfsXUjtLLVpSvjhww5U1zkFPI-POQ2Wkc1YuEsb0,6246
309
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  rapidtide/workflows/resamplenifti.py,sha256=48vf0JT0C4gjPty_R0RDMRd6opilUQ3stevzAvdKInc,4717
310
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  rapidtide/workflows/resampletc.py,sha256=OZJOHnQAaN371pFt_qb8hY8JQ12WggHK6ZP7Q84rvOk,3959
311
- rapidtide/workflows/retroglm.py,sha256=CIacdcO7T25E3GJhydF77UaUTT-5HM0MU9RvK2CKzY4,37425
312
- rapidtide/workflows/retrolagtcs.py,sha256=uewpP6ZpimLrmrRN_iZPjvzITUTWE-mNh1tipFWwVWA,10747
320
+ rapidtide/workflows/retrolagtcs.py,sha256=bniS1bDLvnvX6gKNCLGvBl26uas0dt5BaXf5An83HdQ,10830
321
+ rapidtide/workflows/retroregress.py,sha256=tM0O0MYKiFP72QlpBp3Ex6cHEjOaUq4rAaAcMjYzids,42466
313
322
  rapidtide/workflows/roisummarize.py,sha256=hFYkkYV7fL3gNpAu6Diu1KhOUwLm0cNjWX7V2UNhy4M,6710
314
323
  rapidtide/workflows/runqualitycheck.py,sha256=zFjyhfh_9A5U5GIFIIkITuYa8XlwiEM_1dYg7IJgF6w,2434
315
324
  rapidtide/workflows/showarbcorr.py,sha256=D6Te4fKQaKZC5GFGNlhFkq--NypJ6msApXjqIuGlGMs,13606
@@ -325,12 +334,12 @@ rapidtide/workflows/spectrogram.py,sha256=ATe6baNL-Rv6rvV6rCcxcBO2naFu0v4UDJ2hX6
325
334
  rapidtide/workflows/synthASL.py,sha256=fRfu2lAQwC1Ahi_Sz-mvmp3yZCV_zUWFbu8F9-8RHxM,4971
326
335
  rapidtide/workflows/tcfrom2col.py,sha256=El9pjrCfxANFA3s60YvHOTUx3UYaavJgCOIYtMcvKlk,1936
327
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  rapidtide/workflows/tcfrom3col.py,sha256=6tV2lGEtXpI4dn_8kcTCVzZxpJzmopuDwpXvOIE7vzQ,1938
328
- rapidtide/workflows/tidepool.py,sha256=14yrUQ87syFeTuU0lJBxVz3rBrwV9f4A4fGwVW5Bj_g,86399
337
+ rapidtide/workflows/tidepool.py,sha256=1nYPa_-Z-nYZR-fZNo_8dY9LoO_vl7kwiRC_reM2044,86395
329
338
  rapidtide/workflows/utils.py,sha256=k2m2F1-tWxhcUYvk5geO1yl-c5bKcDX7Jv7ohvJZaOk,5379
330
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  rapidtide/workflows/variabilityizer.py,sha256=yQFDTBcGehxW44R_FQHeeKrTpeYrrh96xcW1uWbPtYo,3167
331
- rapidtide-3.0a11.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
332
- rapidtide-3.0a11.dist-info/METADATA,sha256=zVdYRWhcyzi1lh3_CiHvi_yduUOXQLzLep58HsqEQuA,15624
333
- rapidtide-3.0a11.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
334
- rapidtide-3.0a11.dist-info/entry_points.txt,sha256=76O4RdCVLd7YrASvmgJQWaRUlgmBzMDU5_XkGIlmuTk,3260
335
- rapidtide-3.0a11.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
336
- rapidtide-3.0a11.dist-info/RECORD,,
340
+ rapidtide-3.0a13.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
341
+ rapidtide-3.0a13.dist-info/METADATA,sha256=v9yyxgws4tP-Q2TDofxJi8ZKbTAuBz2m4SqLmxWPsac,15646
342
+ rapidtide-3.0a13.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
343
+ rapidtide-3.0a13.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
344
+ rapidtide-3.0a13.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
345
+ rapidtide-3.0a13.dist-info/RECORD,,
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: setuptools (75.8.2)
2
+ Generator: setuptools (78.1.0)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
@@ -8,6 +8,7 @@ calcicc = rapidtide.scripts.calcicc:entrypoint
8
8
  calctexticc = rapidtide.scripts.calctexticc:entrypoint
9
9
  calcttest = rapidtide.scripts.calcttest:entrypoint
10
10
  ccorrica = rapidtide.scripts.ccorrica:entrypoint
11
+ delayvar = rapidtide.scripts.delayvar:entrypoint
11
12
  diffrois = rapidtide.scripts.diffrois:entrypoint
12
13
  endtidalproc = rapidtide.scripts.endtidalproc:entrypoint
13
14
  fdica = rapidtide.scripts.fdica:entrypoint
@@ -15,13 +16,13 @@ filtnifti = rapidtide.scripts.filtnifti:entrypoint
15
16
  filttc = rapidtide.scripts.filttc:entrypoint
16
17
  fingerprint = rapidtide.scripts.fingerprint:entrypoint
17
18
  fixtr = rapidtide.scripts.fixtr:entrypoint
18
- glmfilt = rapidtide.scripts.glmfilt:entrypoint
19
19
  gmscalc = rapidtide.scripts.gmscalc:entrypoint
20
20
  happy = rapidtide.scripts.happy:entrypoint
21
21
  happy2std = rapidtide.scripts.happy2std:entrypoint
22
22
  happywarp = rapidtide.scripts.happywarp:entrypoint
23
23
  histnifti = rapidtide.scripts.histnifti:entrypoint
24
24
  histtc = rapidtide.scripts.histtc:entrypoint
25
+ linfitfilt = rapidtide.scripts.linfitfilt:entrypoint
25
26
  localflow = rapidtide.scripts.localflow:entrypoint
26
27
  mergequality = rapidtide.scripts.mergequality:entrypoint
27
28
  pairproc = rapidtide.scripts.pairproc:entrypoint
@@ -36,8 +37,8 @@ rapidtide = rapidtide.scripts.rapidtide:entrypoint
36
37
  rapidtide2std = rapidtide.scripts.rapidtide2std:entrypoint
37
38
  resamplenifti = rapidtide.scripts.resamplenifti:entrypoint
38
39
  resampletc = rapidtide.scripts.resampletc:entrypoint
39
- retroglm = rapidtide.scripts.retroglm:entrypoint
40
40
  retrolagtcs = rapidtide.scripts.retrolagtcs:entrypoint
41
+ retroregress = rapidtide.scripts.retroregress:entrypoint
41
42
  roisummarize = rapidtide.scripts.roisummarize:entrypoint
42
43
  runqualitycheck = rapidtide.scripts.runqualitycheck:entrypoint
43
44
  showarbcorr = rapidtide.scripts.showarbcorr:entrypoint
@@ -1,45 +0,0 @@
1
- #!/bin/bash
2
-
3
-
4
- for LEVEL in min less normal more max
5
- do
6
- mkdir -p ../dst/nomotregress/${LEVEL}
7
- sbatch --mem=64G --time=90 --cpus-per-task 4 /cm/shared/miniforge3/envs/mic/bin/rapidtide \
8
- --nprocs 4 \
9
- --passes 3 \
10
- --outputlevel ${LEVEL} \
11
- --searchrange -5 10 \
12
- --noglm \
13
- /data2/HCP1200/100307/preproc/100307/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR.nii.gz \
14
- /home/frederic/code/rapidtide/rapidtide/data/examples/dst/nomotregress/${LEVEL}/sub-RAPIDTIDETEST
15
- done
16
-
17
- for LEVEL in min less normal more max
18
- do
19
- mkdir -p ../dst/motregress/${LEVEL}
20
- sbatch --mem=64G --time=90 --cpus-per-task 4 /cm/shared/miniforge3/envs/mic/bin/rapidtide \
21
- --nprocs 4 \
22
- --passes 3 \
23
- --outputlevel ${LEVEL} \
24
- --searchrange -5 10 \
25
- --noglm \
26
- --motionfile /data2/HCP1200/100307/preproc/100307/MNINonLinear/Results/rfMRI_REST1_LR/Movement_Regressors.txt:0-5 \
27
- /data2/HCP1200/100307/preproc/100307/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR.nii.gz \
28
- /home/frederic/code/rapidtide/rapidtide/data/examples/dst/motregress/${LEVEL}/sub-RAPIDTIDETEST
29
- done
30
-
31
- for LEVEL in min less normal more max
32
- do
33
- for NDERIVS in 0 1
34
- do
35
- mkdir -p ../dst/nomotregress/${LEVEL}glm${NDERIVS}
36
- sbatch --mem=64G --time=90 --cpus-per-task 4 /cm/shared/miniforge3/envs/mic/bin/rapidtide \
37
- --nprocs 4 \
38
- --passes 3 \
39
- --outputlevel ${LEVEL} \
40
- --glmderivs ${NDERIVS} \
41
- --searchrange -5 10 \
42
- /data2/HCP1200/100307/preproc/100307/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR.nii.gz \
43
- /home/frederic/code/rapidtide/rapidtide/data/examples/dst/nomotregress/${LEVEL}glm${NDERIVS}/sub-RAPIDTIDETEST
44
- done
45
- done