rapidtide 3.0.6__py3-none-any.whl → 3.0.7__py3-none-any.whl

rapidtide/workflows/simdata.py

@@ -18,12 +18,13 @@
 #
 import argparse
 
-import numpy as np
 from matplotlib.pyplot import *
 
+import rapidtide.filter as tide_filt
 import rapidtide.io as tide_io
 import rapidtide.miscmath as tide_math
 import rapidtide.resample as tide_resample
+import rapidtide.voxelData as tide_voxelData
 import rapidtide.workflows.parser_funcs as pf
 
 
@@ -38,21 +39,30 @@ def _get_parser():
     )
 
     # Required arguments
-    pf.addreqinputniftifile(
-        parser, "fmrifilename", addedtext="An exemplar BOLD fMRI file with the target dimensions"
+    parser.add_argument(
+        "fmritr",
+        type=lambda x: pf.is_float(parser, x, minval=0.0),
+        help="TR of the simulated data, in seconds.",
+    )
+    parser.add_argument(
+        "numtrs",
+        type=lambda x: pf.is_int(parser, x, minval=1),
+        help="Number of TRs in the simulated data.",
     )
     pf.addreqinputniftifile(
         parser, "immeanfilename", addedtext="3D file with the mean value for each voxel"
     )
     parser.add_argument("outputroot", type=str, help="Root name for the output files.")
-    parser.add_argument(
-        "slicetimefile",
-        type=str,
-        help="Slice acquisition time file, either FSL format or BIDS sidecar.",
-    )
 
     for band in ["lfo", "resp", "cardiac"]:
-        parser.add_argument(
+        if band == "lfo":
+            bandopts = parser.add_argument_group("LFO band options")
+        elif band == "resp":
+            bandopts = parser.add_argument_group("Resp band options")
+        else:
+            bandopts = parser.add_argument_group("Cardiac band options")
+        strengthopts = bandopts.add_mutually_exclusive_group()
+        strengthopts.add_argument(
             f"--{band}pctfile",
             dest=(f"{band}pctfile"),
             action="store",
@@ -61,7 +71,18 @@ def _get_parser():
             help=(f"3D NIFTI file with the {band} amplitude in percent of mean at every point"),
             default=None,
         )
-        parser.add_argument(
+        strengthopts.add_argument(
+            f"--{band}signalfraction",
+            dest=(f"{band}sigfracfile"),
+            action="store",
+            type=lambda x: pf.is_valid_file(parser, x),
+            metavar="FILE",
+            help=(
+                f"3D NIFTI file with the {band} amplitude expressed as the percentage of inband variance accounted for by the regressor"
+            ),
+            default=None,
+        )
+        bandopts.add_argument(
             f"--{band}lagfile",
             dest=(f"{band}lagfile"),
             action="store",
@@ -70,7 +91,7 @@ def _get_parser():
             help=(f"3D NIFTI file with the {band} delay value in seconds at every point"),
             default=None,
         )
-        parser.add_argument(
+        bandopts.add_argument(
             f"--{band}regressor",
             dest=(f"{band}regressor"),
             action="store",
@@ -79,7 +100,7 @@ def _get_parser():
             help=(f"The {band} regressor text file"),
             default=None,
         )
-        parser.add_argument(
+        bandopts.add_argument(
             f"--{band}samprate",
             dest=(f"{band}samprate"),
             action="store",
@@ -88,7 +109,7 @@ def _get_parser():
             help=(f"The sample rate of the {band} regressor file, in Hz"),
             default=None,
         )
-        parser.add_argument(
+        bandopts.add_argument(
             f"--{band}starttime",
             dest=(f"{band}starttime"),
             action="store",
@@ -103,6 +124,16 @@ def _get_parser():
         )
 
     # optional arguments
+    parser.add_argument(
+        "--slicetimefile",
+        dest="slicetimefile",
+        action="store",
+        type=str,
+        metavar="FILE",
+        help="Slice acquisition time file, either FSL format or BIDS sidecar.",
+        default=None,
+    )
+
     parser.add_argument(
         "--numskip",
         dest="numskip",
@@ -127,7 +158,9 @@ def _get_parser():
         action="store",
         type=float,
         metavar="LEVEL",
-        help=("The variance of the voxel specific noise.  Default is 0.0"),
+        help=(
+            "The variance of the voxel specific noise, as percent of the voxel mean.  Default is 0.0"
+        ),
         default=0.0,
     )
     parser.add_argument(
@@ -144,8 +177,9 @@ def _get_parser():
 
 
 def prepareband(
-    fmridims,
+    simdatadims,
     pctfile,
+    sigfracfile,
     lagfile,
     regressorfile,
     samprate,
@@ -155,8 +189,9 @@ def prepareband(
     debug=False,
 ):
     if debug:
-        print("fmridims:", fmridims)
+        print("simdatadims:", simdatadims)
         print("pctfile:", pctfile)
+        print("sigfracfile:", sigfracfile)
         print("lagfile:", lagfile)
         print("regressorfile:", regressorfile)
         print("regressorname:", regressorname)
@@ -204,44 +239,66 @@ def prepareband(
         regressor_x[-1],
     )
 
-    nim_pct, pctdata, pctheader, pctdims, pctsizes = tide_io.readfromnifti(pctfile)
-    if not tide_io.checkspacedimmatch(pctdims, fmridims):
-        print(regressorname, "pct file does not match fmri")
-        exit()
+    if pctfile is not None:
+        nim_pct, pctdata, pctheader, pctdims, pctsizes = tide_io.readfromnifti(pctfile)
+        pctscale = True
+    else:
+        nim_pct, pctdata, pctheader, pctdims, pctsizes = tide_io.readfromnifti(sigfracfile)
+        pctscale = False
+        if not tide_io.checkspacedimmatch(pctdims, simdatadims):
+            print(regressorname, "pct file does not match fmri")
+            exit()
+        pctdata /= 100.0
     nim_lag, lagdata, lagheader, lagdims, lagsizes = tide_io.readfromnifti(lagfile)
-    if not tide_io.checkspacedimmatch(lagdims, fmridims):
+    if not tide_io.checkspacedimmatch(lagdims, simdatadims):
         print(regressorname, "lag file does not match fmri")
         exit()
 
     generator = tide_resample.FastResampler(
         regressor_x, regressor_y, padtime=padtime, doplot=False
     )
-    return pctdata, lagdata, generator
+    return pctdata, pctscale, lagdata, generator
 
 
 def fmrisignal(
+    Fs,
     times,
     meanvalue,
     dolfo=False,
     lfowave=None,
     lfomag=None,
     lfodelay=None,
+    lfonoise=0.0,
+    lfofilter=None,
     doresp=False,
     respwave=None,
     respmag=None,
     respdelay=None,
+    respnoise=0.0,
+    respfilter=None,
     docardiac=False,
     cardiacwave=None,
     cardiacmag=None,
     cardiacdelay=None,
+    cardiacnoise=0.0,
+    cardiacfilter=None,
 ):
     thesignal = np.zeros((len(times)), dtype=float)
     if dolfo:
-        thesignal += meanvalue * (lfomag / 100.0) * lfowave.yfromx(times - lfodelay)
+        thesignal += meanvalue * (
+            lfomag * lfowave.yfromx(times - lfodelay)
+            + lfonoise * lfofilter.apply(Fs, np.random.standard_normal(len(times)))
+        )
     if doresp:
-        thesignal += meanvalue * (respmag / 100.0) * respwave.yfromx(times - respdelay)
+        thesignal += meanvalue * (
+            respmag * respwave.yfromx(times - respdelay)
+            + respnoise * respfilter.apply(Fs, np.random.standard_normal(len(times)))
+        )
     if docardiac:
-        thesignal += meanvalue * (cardiacmag / 100.0) * cardiacwave.yfromx(times - cardiacdelay)
+        thesignal += meanvalue * (
+            cardiacmag * cardiacwave.yfromx(times - cardiacdelay)
+            + cardiacnoise * cardiacfilter.apply(Fs, np.random.standard_normal(len(times)))
+        )
     return thesignal + meanvalue
 
 
@@ -250,33 +307,38 @@ def simdata(args):
     lfopctdata = None
     lfolagdata = None
     lfogenerator = None
+    lfofilter = None
 
     resppctdata = None
     resplagdata = None
     respgenerator = None
+    respfilter = None
 
     cardiacpctdata = None
     cardiaclagdata = None
     cardiacgenerator = None
+    cardiacfilter = None
 
     # check for complete information
     if (
-        (args.lfopctfile is None)
+        ((args.lfopctfile is None) and (args.lfosigfracfile is None))
         or (args.lfolagfile is None)
         or (args.lforegressor is None)
         or ((args.lfosamprate is None) and (tide_io.parsefilespec(args.lforegressor)[1] is None))
     ):
         print("lfopctfile:", args.lfopctfile)
+        print("lfosigfracfile:", args.lfosigfracfile)
         print("lfolagfile:", args.lfolagfile)
         print("lforegressor:", args.lforegressor)
         print("lfopctsamprate:", args.lfosamprate)
         dolfo = False
     else:
         dolfo = True
+        lfofilter = tide_filt.NoncausalFilter("lfo")
         print("LFO information is complete, will be included.")
 
     if (
-        (args.resppctfile is None)
+        ((args.resppctfile is None) and (args.respsigfracfile is None))
         or (args.resplagfile is None)
         or (args.respregressor is None)
         or ((args.respsamprate is None) and (tide_io.parsefilespec(args.respregressor)[1] is None))
@@ -284,10 +346,11 @@ def simdata(args):
         doresp = False
     else:
         doresp = True
+        respfilter = tide_filt.NoncausalFilter("resp")
         print("Respiratory information is complete, will be included.")
 
     if (
-        (args.cardiacpctfile is None)
+        ((args.cardiacpctfile is None) and (args.cardiacsigfracfile is None))
         or (args.cardiaclagfile is None)
         or (args.cardiacregressor is None)
         or (
@@ -298,6 +361,7 @@ def simdata(args):
         docardiac = False
     else:
         docardiac = True
+        cardiacfilter = tide_filt.NoncausalFilter("cardiac")
         print("Cardiac information is complete, will be included.")
     if not (dolfo or doresp or docardiac):
         print(
@@ -306,23 +370,17 @@ def simdata(args):
         _get_parser().print_help()
         sys.exit()
 
-    sliceoffsettimes, normalizedtotr, fileisjson = tide_io.getslicetimesfromfile(
-        args.slicetimefile
-    )
-
-    fmritr, numtrs = tide_io.fmritimeinfo(args.fmrifilename)
-    if normalizedtotr:
-        sliceoffsettimes *= fmritr
-
-    nim_fmri, fmridata, fmriheader, fmridims, fmrisizes = tide_io.readfromnifti(args.fmrifilename)
-    print(f"fmri data: {numtrs} timepoints, tr = {fmritr}")
+    print(f"simulated fmri data: {args.numtrs} timepoints, tr = {args.fmritr}")
 
     # prepare the output timepoints
     initial_fmri_x = (
         np.linspace(
-            0.0, fmritr * (numtrs - args.numskip), num=(numtrs - args.numskip), endpoint=False
+            0.0,
+            args.fmritr * (args.numtrs - args.numskip),
+            num=(args.numtrs - args.numskip),
+            endpoint=False,
         )
-        + fmritr * args.numskip
+        + args.fmritr * args.numskip
     )
     print("length of fmri after removing skip:", len(initial_fmri_x))
     print(
@@ -332,34 +390,36 @@ def simdata(args):
 
     # read in the immean file
     print("reading in source files")
-    (
-        nim_immean,
-        immeandata,
-        immeanheader,
-        immeandims,
-        immeansizes,
-    ) = tide_io.readfromnifti(args.immeanfilename)
-    if not tide_io.checkspacedimmatch(immeandims, fmridims):
-        print("immean file does not match")
-        exit()
+    theimmeandata = tide_voxelData.VoxelData(args.immeanfilename, timestep=args.fmritr)
+    immeandata = theimmeandata.byvol()
 
     # now set up the simulated data array
-    thedims = fmridims
-    xsize = thedims[1]
-    ysize = thedims[2]
-    numslices = thedims[3]
-    simdata = np.zeros((xsize, ysize, numslices, len(initial_fmri_x)), dtype="float")
+    simdataheader = theimmeandata.copyheader(
+        numtimepoints=len(initial_fmri_x), tr=args.fmritr, toffset=args.numskip * args.fmritr
+    )
+    simdatadims = simdataheader["dim"].copy()
+    xsize, ysize, numslices, timepoints = tide_io.parseniftidims(simdatadims)
+    simdata = np.zeros((xsize, ysize, numslices, timepoints), dtype="float")
+
+    # read in the slicetimes file if we have one
+    if args.slicetimefile is not None:
+        sliceoffsettimes, normalizedtotr, fileisjson = tide_io.getslicetimesfromfile(
+            args.slicetimefile
+        )
+    else:
+        sliceoffsettimes = np.zeros((numslices), dtype=float)
 
     # set up fast resampling
     padtime = 60.0
-    numpadtrs = int(padtime / fmritr)
-    padtime = fmritr * numpadtrs
+    numpadtrs = int(padtime / args.fmritr)
+    padtime = args.fmritr * numpadtrs
 
     # prepare the input data for interpolation
     if dolfo:
-        lfopctdata, lfolagdata, lfogenerator = prepareband(
-            fmridims,
+        lfopctdata, lfopctscale, lfolagdata, lfogenerator = prepareband(
+            simdatadims,
             args.lfopctfile,
+            args.lfosigfracfile,
             args.lfolagfile,
             args.lforegressor,
             args.lfosamprate,
@@ -369,9 +429,10 @@ def simdata(args):
             debug=args.debug,
         )
     if doresp:
-        resppctdata, resplagdata, respgenerator = prepareband(
-            fmridims,
+        resppctdata, resppctscale, resplagdata, respgenerator = prepareband(
+            simdatadims,
             args.resppctfile,
+            args.respsigfracfile,
             args.resplagfile,
             args.respregressor,
             args.respsamprate,
@@ -381,9 +442,10 @@ def simdata(args):
             debug=args.debug,
         )
     if docardiac:
-        cardiacpctdata, cardiaclagdata, cardiacgenerator = prepareband(
-            fmridims,
+        cardiacpctdata, cardiacpctscale, cardiaclagdata, cardiacgenerator = prepareband(
+            simdatadims,
             args.cardiacpctfile,
+            args.cardiacsigfracfile,
             args.cardiaclagfile,
             args.cardiacregressor,
             args.cardiacsamprate,
@@ -408,42 +470,64 @@ def simdata(args):
                 # add in the signals
                 if dolfo:
                     lfopct = lfopctdata[i, j, k]
+                    if lfopctscale:
+                        lfonoise = 0.0
+                    else:
+                        lfonoise = 1.0 - lfopct
                     lfolag = lfolagdata[i, j, k]
                 else:
                     lfopct = 0.0
                     lfolag = 0.0
+                    lfonoise = 0.0
                 if doresp:
                     resppct = resppctdata[i, j, k]
+                    if resppctscale:
+                        respnoise = 0.0
+                    else:
+                        respnoise = 1.0 - resppct
                     resplag = resplagdata[i, j, k]
                 else:
                     resppct = 0.0
                     resplag = 0.0
+                    respnoise = 0.0
                 if docardiac:
                     cardiacpct = cardiacpctdata[i, j, k]
+                    if cardiacpctscale:
+                        cardiacnoise = 0.0
+                    else:
+                        cardiacnoise = 1.0 - cardiacpct
                     cardiaclag = cardiaclagdata[i, j, k]
                 else:
                     cardiacpct = 0.0
                     cardiaclag = 0.0
+                    cardiacnoise = 0.0
 
                 simdata[i, j, k, :] = (
                     fmrisignal(
+                        (1.0 / args.fmritr),
                         fmri_x_slice,
                         immeandata[i, j, k],
                         dolfo=dolfo,
                         lfowave=lfogenerator,
                         lfomag=lfopct,
                         lfodelay=lfolag,
+                        lfonoise=lfonoise,
+                        lfofilter=lfofilter,
                         doresp=doresp,
                         respwave=respgenerator,
                         respmag=resppct,
                         respdelay=resplag,
+                        respnoise=respnoise,
+                        respfilter=respfilter,
                         docardiac=docardiac,
                         cardiacwave=cardiacgenerator,
                         cardiacmag=cardiacpct,
                         cardiacdelay=cardiaclag,
+                        cardiacnoise=cardiacnoise,
+                        cardiacfilter=cardiacfilter,
                     )
                     + theglobalnoise
-                    + thevoxelnoise
+                    + (thevoxelnoise) / 100.0 * immeandata[i, j, k]
                 )
 
-    tide_io.savetonifti(simdata, fmriheader, args.outputroot)
+    tide_io.savetonifti(simdata, simdataheader, args.outputroot)

{rapidtide-3.0.6.dist-info → rapidtide-3.0.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.6
+Version: 3.0.7
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.6.dist-info → rapidtide-3.0.7.dist-info}/RECORD

@@ -8,21 +8,21 @@ cloud/rapidtide-cloud-test,sha256=SATOwGo4QYLvt-6hE0e3wyK9JjuDU5XzfLrfMoybvcY,46
 cloud/simple-cp-test,sha256=5ef8wmLfcKdny59BV6_DnAPj7O_mi0rOHdFZVN2iiLA,421
 rapidtide/Colortables.py,sha256=OVtgnQ9xTJPgfdyK1ktESHRjBh09cxLVPZvgUvV5jOo,5814
 rapidtide/OrthoImageItem.py,sha256=w70QNZUelMI7wTWYaqOfkJEb38PdsxgSf0NLdyjlcNs,21669
-rapidtide/RapidtideDataset.py,sha256=sccBQf8T9zvOMSHHXG7pwEm-sUyzbyZ4i0rFuWMwj3A,52343
+rapidtide/RapidtideDataset.py,sha256=mHK6dL1cFSSM5jYw6rkzb57lWVVz-TGX-xMeV8IqF-M,53013
 rapidtide/RegressorRefiner.py,sha256=dPG9Vy2nlqxv2Mx9vrYtgYTsNGcVIwWknawDrNdpZxQ,17232
 rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
-rapidtide/_version.py,sha256=UtEXJd46WP8m98PcqQx8gq-8JqTDu8wCnRQgnaX1heQ,497
+rapidtide/_version.py,sha256=HDQ6uc9dBVVhrf7M2MUpG-xKl7d0UA0eisj2QL7_Kd4,497
 rapidtide/calccoherence.py,sha256=-_vglu0MZB85Aodw6GpYhBApFBt5eslppfxF4rXM6Xg,3409
 rapidtide/calcnullsimfunc.py,sha256=34osvoQ_tWk3VeFk7g3TYsmpPVRMIkEX31KYvx5Ox_A,5032
 rapidtide/calcsimfunc.py,sha256=xCPYns-XOnLWjwujbP7a7EwGEzhEwOHMf04RpFlL3SI,4713
-rapidtide/correlate.py,sha256=za2lqbYZZGpIHoMC8VOrLH8cP8B3pG2Mh8VFaZf-4aE,36800
+rapidtide/correlate.py,sha256=cKfJR35A0tnbx56aGfaXTgnYsHxWUR3o2bUVi7MSo7E,37147
 rapidtide/dlfilter.py,sha256=sJ1UoekNFlGVJOIeN6BKP_-pU-MOHD5Gc4GT7FTB2So,58161
 rapidtide/externaltools.py,sha256=-p2GZRRpI2_7eRY8N6lnG4DBQKoRd_WZZQzvgFCicUY,3965
 rapidtide/fMRIData_class.py,sha256=qVPp8xUw98cUJm4zsO5UUXrgBWz-UhJhwHLrzjBNxow,5102
 rapidtide/filter.py,sha256=GySR0UdlrfNzWs9HOdvsIGlfHKThT9KdamNk0Y0JHeU,71647
 rapidtide/fit.py,sha256=whveHKtqC-cPWxclCf86-5iBAtXOdXL2G1yg082q6R8,67955
 rapidtide/genericmultiproc.py,sha256=ZQwN84HpC7ZA_w4qekBqA4suU_70ryqGjAsTAIa4oSw,3423
-rapidtide/happy_supportfuncs.py,sha256=TfznBv_t4cp5-YZ7ClKyjhAA3ZuMPOL6XMYLzWAcljE,42023
+rapidtide/happy_supportfuncs.py,sha256=kGL2fJkL9HU4-V71eyMaRBwx3RONPmy02rKxBF7k6os,56261
 rapidtide/helper_classes.py,sha256=2m2zcFUgE12JhYL0HQJEafJ1pFa0Zsb46Lpi9iw3Qbg,51470
 rapidtide/io.py,sha256=A3qFJdFFf1XSVlqPvoOF733OoxrRcbRO-gSEoh_95bE,75037
 rapidtide/linfitfiltpass.py,sha256=ps7IGbKcpO33kLW0gK2O0OBddDs3PoC-0zhs9gWAe9M,16303
@@ -35,7 +35,7 @@ rapidtide/peakeval.py,sha256=ZDcuAT4Bw9bTU1oJTvOn9t_rWEZOsXHC5PiNnDdFlX0,5198
 rapidtide/qualitycheck.py,sha256=exTRCQDf9OsNbmlemr-5YPjDGDg3uSTyc8amidXUZqU,11917
 rapidtide/refinedelay.py,sha256=abOji4e2k7DpQR7jxgGh6nJ2IE4ZxQp5S5DNKfLZwP8,16323
 rapidtide/refineregressor.py,sha256=w9RP2SDjC769FmUq_CQ5ZUtr5-7kfzhvlzlBvKs8cXg,21831
-rapidtide/resample.py,sha256=0IX6Ais7Fxuz9HfrSpNGkKF7w3xKWm_fTs6yA7X43hk,30592
+rapidtide/resample.py,sha256=UYK3QCgNltOdgXKMEbqsFVjQEVD-Ar1lodLvdUQH4_o,30751
 rapidtide/simfuncfit.py,sha256=QfBJxkn4lzNX4HIx2CbvWUV55C2WZmfwwm69RqNtlSE,11837
 rapidtide/stats.py,sha256=vA79EazdcpQHJJFC0tjKBc37Ij_KfSeKcSPOjuWCHuM,29230
 rapidtide/tidepoolTemplate.py,sha256=YK6vXIXfgAq5OHa67RjvL0MhMJIIgjmDpxQY16Cwnl4,46252
@@ -48,7 +48,7 @@ rapidtide/tidepoolTemplate_big.ui,sha256=lJYAJHJA8iJYJTlnq5GllkW-VMRrpLhDL4kskwU
 rapidtide/tidepoolTemplate_big_qt6.py,sha256=yXmFpoO5exhbXHtjKVE7AG-oi7tB6QOCFW5RRO0z6Ls,67499
 rapidtide/tidepoolTemplate_qt6.py,sha256=qBgufkyHsmEZ_HPgAu8LLbztlwlyfm6KcRfJ9qVFbXc,48198
 rapidtide/util.py,sha256=2Q991FzjiSgn5qHErVgAV7bya3ylNDdhctE-3X7ImH4,36487
-rapidtide/voxelData.py,sha256=f-LXAPPSRvwJ9nFOZncayLMfS7XuIjFNW7TWoWWS96U,13328
+rapidtide/voxelData.py,sha256=En0SJuG2gykXrmEcFs1n0BxpzTNH5wikiPUUr97RcAA,14015
 rapidtide/wiener.py,sha256=UcRBIJZY5RYgpKFwlvppXDsXRIX_MJgPB37S9nvC4lU,4128
 rapidtide/wiener2.py,sha256=IF913hQ4naCjLYGXCspNsA-YCCb0WvjjueDl6UoWvLo,3746
 rapidtide/data/examples/src/installtestdata,sha256=ummRjxxmArheODnzRHwb6DL9Sxhay6ulJpETEMVy-fs,205
@@ -65,12 +65,12 @@ rapidtide/data/examples/src/testdecomp,sha256=xxxr510aOBjtpJy4aQNAFTyEFZD6QdHp6-
 rapidtide/data/examples/src/testdelayvar,sha256=tMn1k8IfvBL7MKhgGC6EGcSkChtXWKp1bENOGG4SagI,330
 rapidtide/data/examples/src/testfileorfloat,sha256=9r4mz7pBV_8iFZya9kmtfbnTRS3-94Cx9Q63Ni3mkZs,815
 rapidtide/data/examples/src/testfingerprint,sha256=RlAIC1lMDWMGzZKxY24DJRuaUEL0BenSFBey0gL5dqU,402
-rapidtide/data/examples/src/testfmri,sha256=gCzWnn2hpwicA814FitZ7GjV-uwt20PtJsUCkn0_08w,473
+rapidtide/data/examples/src/testfmri,sha256=FatnYBPAPCIC6MVWwfhs7bJkQnkB-DlNXIkb28-8Asw,972
 rapidtide/data/examples/src/testfmridocker,sha256=jjL7bK29rrcog6uO9BtvcyAU3Sv8_5cbw2nqKoiZ95o,1193
 rapidtide/data/examples/src/testfrozen,sha256=K3qUWDRKPPiCXRgIFuPdwUUjUTzf4QBW8UUhR75NzDM,283
 rapidtide/data/examples/src/testfuncs,sha256=zjq9u7mXMf0UlbUgePyS1mj7QHclicmw6NY0g31SqeY,1551
 rapidtide/data/examples/src/testglmfilt,sha256=MuZlVBJIV7FrTWFLKGuWBcpR9WiZEjCGeD6cAnJLeNI,3357
-rapidtide/data/examples/src/testhappy,sha256=wXhKDIlAB2kusIBwzaTmPaMuPV2cJk-vlQ3sLVW7-n8,1967
+rapidtide/data/examples/src/testhappy,sha256=FOBQWO8vdgkZKt_yzzB0Q4mvg7oScXaknPVCb2imGAw,1557
 rapidtide/data/examples/src/testinitdelay,sha256=ts_r5WZBLJDQ3UfPmJ9sfXlO0arO9dhGCQ_Y1wYvjMk,559
 rapidtide/data/examples/src/testlinfit,sha256=oPnkHJ6lcwsuJhnSMMK7Gx3DHSCf6JK7CIYuIMHbyNA,471
 rapidtide/data/examples/src/testlocalflow,sha256=hEwstisbWVuALr_29fBJ2nHETKkEF_9qK8wJ4kzuiJk,596
@@ -82,7 +82,7 @@ rapidtide/data/examples/src/testpad,sha256=O4bgGWNTMjaitT_yT7UXRKwOl5UFS9nnXjcQT
 rapidtide/data/examples/src/testrefineonly,sha256=PyYGqga3b25hgbscX1wrIqvyYDHJ8udD60c5tDPHFTs,595
 rapidtide/data/examples/src/testretro,sha256=y0aDcFr1XGiSe6Tg_gy4e5Fip9aOe2GUSEhNvl7mvo0,2855
 rapidtide/data/examples/src/testretrolagtcs,sha256=IazwDDMSESx1ixF8hyoKYTJYsHwCzI-uIkSah9gkRoo,570
-rapidtide/data/examples/src/testsimdata,sha256=zqbuBMGMGvwnqfXcmPJoKksC0D4LoykP3s_JktoMyqI,1042
+rapidtide/data/examples/src/testsimdata,sha256=0tcCHaU5TO3FjI74qV1f98hp4OQSI4IhpujWBhg0R9Y,1509
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png,sha256=LJ1aaEPx3m6MhioK3YN8QZYBhlI0lY0Wb2SAV2SQmYI,24123
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt,sha256=anU71cFjmYpQvMcMZIPADHWKIfvGxTL6ZZgk6RDWZkg,138
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras,sha256=0fyy1Pf1YBb0OubpaUu_I3fAZC8UHG1FOs9kAGJlbIU,298164
@@ -220,7 +220,7 @@ rapidtide/tests/test_aliasedcorrelate.py,sha256=3387A6Ngo3mbqIiUWxJhtppe6E3AplAC
 rapidtide/tests/test_aligntcs.py,sha256=PKkj8JGrHx-8Kpx5LQF5mwhWUFsMR-w2bkhWOREeHsY,1715
 rapidtide/tests/test_calcicc.py,sha256=T3f-9k4ah9JesGFHFEobvQ4BK0oXwXkjCW1cyGjOgfU,1387
 rapidtide/tests/test_cleanregressor.py,sha256=tkVOhJEOwcP_LDqV61qR6gORhAipZjKjeYiEXBjOy1k,6265
-rapidtide/tests/test_congrid.py,sha256=pzU6xtQy43QofLYP9KtQIiOyjZBnrXUhKbh4ha_UQV0,5584
+rapidtide/tests/test_congrid.py,sha256=sM0qLbT1vKU3YnMDEf99pESE8JCsqYxwggaR1T_2w0k,5610
 rapidtide/tests/test_correlate.py,sha256=SKqLbj0MDQ7wZ1N70j6x07_i-Jok9ySPdJMt8lJ7qq0,2547
 rapidtide/tests/test_corrpass.py,sha256=zoZ5odTxlZ3d_tEvSXOU0qyhbIzCdauoRy4MUkHehHc,7836
 rapidtide/tests/test_delayestimation.py,sha256=CGt-z1mRjKralIeXWqGOCP_8LHS9a0LfhSuRHgwAN-A,13506
@@ -293,7 +293,7 @@ rapidtide/workflows/atlasaverage.py,sha256=6j5cNWk613R98LFmBAfVDJh6TuTo8Uxa-VW7n
 rapidtide/workflows/atlastool.py,sha256=6aMMtr6knETNTyW-laThMeiO8mcdd71F8MSsdYHMeIM,16076
 rapidtide/workflows/calctexticc.py,sha256=9nGGAiqiD2MPg7UiIGR2V7rdtx-jcXQ_Q7uTXCziraQ,10486
 rapidtide/workflows/ccorrica.py,sha256=ZGuBoM4u860Q7WxbNp-yxTxBaHLNozL7Kbx3o3rvaFk,10457
-rapidtide/workflows/cleanregressor.py,sha256=O9YgBfgNYKgSBY5ZNs2M7W7q5tBC4yMJZ0a3gavrnbo,10261
+rapidtide/workflows/cleanregressor.py,sha256=HYm3T3fH6dzFcgFjlYpf5i0NGCtCK_D739quOLIzUyM,10293
 rapidtide/workflows/delayestimation.py,sha256=cC7d69JXn6vnumSfs9f7gNJuaKqQSzXEoxAi7Td-miM,17647
 rapidtide/workflows/delayvar.py,sha256=s4hOTtj3-jXGirLOlIFId-3QFzvQXJtMRifvcXLlDFQ,40697
 rapidtide/workflows/diffrois.py,sha256=imyKnnO8wnKbVoqsYEpYfJl0oBLllG9_pbV-0D1IdIw,5451
@@ -303,9 +303,9 @@ rapidtide/workflows/filtnifti.py,sha256=LXQw8yY7xbVCYAWNO5wsJOYHkxOH5I4x_oRaaXsP
 rapidtide/workflows/filttc.py,sha256=QHMJ41ZORxB8fG4IcvxKUgSfmOL4X9cFQFpM5px1Uxw,4514
 rapidtide/workflows/fixtr.py,sha256=KYr3veeHDUjozH3IO-0iPhLqNDGEc2NcUvzn6tuxeN8,2025
 rapidtide/workflows/gmscalc.py,sha256=Z-3HV2EU-HuIhpr7s5u4EAPAaW0gXtj2aVZt7386Gr8,6258
-rapidtide/workflows/happy.py,sha256=8Y2IsfGVjIGbYLPAnL9Qdh8Kd8iLW-sGKi-rVdt9mBE,75198
+rapidtide/workflows/happy.py,sha256=8iDUnN3j2VoRIdA9G51xvfnT41k76HPuisv25QMxHz0,77220
 rapidtide/workflows/happy2std.py,sha256=6gya9YjfPzPMu15jsMUbu7pLq430-n3b3meiTWhRkAo,8132
-rapidtide/workflows/happy_parser.py,sha256=JXXJRas-fooU_KeZfqJ1l9NbmHYsola8NFb3gSQl9ew,26292
+rapidtide/workflows/happy_parser.py,sha256=OQTcUIvB61p0niNpG__9auUINb962PKmp0wz6qj_uN8,27354
 rapidtide/workflows/histnifti.py,sha256=BeABj0osc0mEnmyKonN0Hgeis8L8soO-w-cVaeMKLUI,11197
 rapidtide/workflows/histtc.py,sha256=ZiLLTshdpQBVHja1jEGFiaZ-YVxVhVtFeGv9w5R7HFc,4561
 rapidtide/workflows/linfitfilt.py,sha256=J6_qFZrfEf8Zf7-JA9EMaSXvyV_2ViNIqzju-ugjNGU,10007
@@ -322,9 +322,9 @@ rapidtide/workflows/plethquality.py,sha256=kTO74C5aSBmomzt59zs1VeiO_C5SPTxvyZZ0v
 rapidtide/workflows/polyfitim.py,sha256=bVKBrrFa0WjWZju4Lkrr8_9mFWALqCxkpCX28540GQA,10184
 rapidtide/workflows/proj2flow.py,sha256=SbkYTRZ_SViVfiM0QJjo20RrICtbsQpEd2i9o9XDgPU,7290
 rapidtide/workflows/rankimage.py,sha256=9opJb3OikO69wtN8zgF3XJxgoHy1-erzZiDKs8pDM6U,3482
-rapidtide/workflows/rapidtide.py,sha256=mVjIEE3TQbI5PyDwzWsgz_7vEd35zFXu5ywR6y_c1HE,153734
+rapidtide/workflows/rapidtide.py,sha256=aoRCiZNOqxpIW6dRjh__DGovy5qMZDbvdz8bw11jZvg,154228
 rapidtide/workflows/rapidtide2std.py,sha256=coxEnRAof6NNpeXjjECPazx5Wotf4l1SJCnaVEvmHQY,10483
-rapidtide/workflows/rapidtide_parser.py,sha256=8mL7Mcw6oRRxbZNomHlUCgnqN6-Iz9GBz8QQujtYwJg,78242
+rapidtide/workflows/rapidtide_parser.py,sha256=lua4DzNd9Vi7egAbba8z068zbWW5EKuwqxHQyaa-Kps,78457
 rapidtide/workflows/regressfrommaps.py,sha256=GTpqnOkyA1A3Ki0oZ0ugSJrjrYa2gbtIGeKPpF49IxU,5319
 rapidtide/workflows/resamplenifti.py,sha256=GJE7f8bzMRY3QYiMYZOD8bDnga4ah97sp-ZL3yaaIFA,4717
 rapidtide/workflows/resampletc.py,sha256=B4YIKn3qpDaM9dIhYjGwPl-2LtaEhm9fnMBzfBgAUSs,3959
@@ -332,13 +332,13 @@ rapidtide/workflows/retrolagtcs.py,sha256=ep1Ve1GS9NqqE6Pw9kxeWyw78sEg-M1IV-KuSn
 rapidtide/workflows/retroregress.py,sha256=sd7L_ri8av1euINcpKLgokrPGQo7QKQDguf0OWL8xD0,52631
 rapidtide/workflows/roisummarize.py,sha256=gnGcWOXRgRm6USgilj9K9Q3Mt5oUNCaincvJj1_ayPs,6710
 rapidtide/workflows/runqualitycheck.py,sha256=JIA2olhDk66HHSbLvsFrZieQq56YCIpbWpFzz0_ShHM,2434
-rapidtide/workflows/showarbcorr.py,sha256=mJpF2wSaMNw_jPZv4ru4x9x-rIOTDAABYZw7ZYesjF8,13606
+rapidtide/workflows/showarbcorr.py,sha256=FYgc_L8E0IqUeB4XpFZIFXHMuzWYLxQykwyfYTVZ0G8,14115
 rapidtide/workflows/showhist.py,sha256=qP6JOdw4SyuzIcY6OUOkM4zmqLSWvEA8Z9LerqyzFmI,3644
 rapidtide/workflows/showstxcorr.py,sha256=FulltRbjGaBBIIRF9Wc_4oU2bpmMjfc3tZus5TygOlI,17788
 rapidtide/workflows/showtc.py,sha256=mddcdbpRzLXIiTqnutVqQapa9fudAeK3uALBVgM-dDE,18835
 rapidtide/workflows/showxcorrx.py,sha256=6QF2w7T5xxIOgaHIJHKlMWkxb9MBPA56eZk-spW0S-c,31221
 rapidtide/workflows/showxy.py,sha256=p-1pkE5cKVd2zMQ-kSI3-Xk21jHSLiQPa-ql1DIO-vc,10532
-rapidtide/workflows/simdata.py,sha256=YahDPmVM-lOV1qgpbfkq6QwrS2Pa99IRlfMglNXDQ1I,13827
+rapidtide/workflows/simdata.py,sha256=sLW1iu3Gn5zXuXsbAwMS5jdoppkxjhf-ZW17PgDjPFk,17318
 rapidtide/workflows/spatialfit.py,sha256=2p_f7nqYKauLTvwmhyfn7FiJ1BMzFsRxHfCQe2ULoXk,9136
 rapidtide/workflows/spatialmi.py,sha256=_Vvb2lukopzNh9QL9g6XBRvTlartZgq6Fzc2je-sbY8,13407
 rapidtide/workflows/spectrogram.py,sha256=7_CzFgX9ppE_2C4GiSP235BRUoh3YspCR_57_5Lx4HA,6452
@@ -348,9 +348,9 @@ rapidtide/workflows/tcfrom3col.py,sha256=kV3V-qZ7A7LkD96aHVXabvohA8udsflHXnzsQIw
 rapidtide/workflows/tidepool.py,sha256=Cac0zhS2ZT6myY_H2A0dAIox8ZoFyf42iB3flSb0qbw,86612
 rapidtide/workflows/utils.py,sha256=urIN-042oUCRDusVUSjBelVN3Te2JP3svY3ckq-yBMU,5379
 rapidtide/workflows/variabilityizer.py,sha256=h7Hhrxn84MclRfbAvKIZJoNzlcKO-8d9lZ6y6YFStk8,3167
-rapidtide-3.0.6.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-rapidtide-3.0.6.dist-info/METADATA,sha256=2BoMip86LO1pwQ9sRwr1nBx9_EfgCXwzZMJf6yufC_w,15688
-rapidtide-3.0.6.dist-info/WHEEL,sha256=zaaOINJESkSfm_4HQVc5ssNzHCPXhJm0kEUakpsEHaU,91
-rapidtide-3.0.6.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
-rapidtide-3.0.6.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
-rapidtide-3.0.6.dist-info/RECORD,,
+rapidtide-3.0.7.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+rapidtide-3.0.7.dist-info/METADATA,sha256=oa7HDGqrA2y0sAEhBZR0aeUPcm2u7lHdVmWYXb6D7nE,15688
+rapidtide-3.0.7.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+rapidtide-3.0.7.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
+rapidtide-3.0.7.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
+rapidtide-3.0.7.dist-info/RECORD,,

{rapidtide-3.0.6.dist-info → rapidtide-3.0.7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.8.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any