rapidtide 3.0.4__py3-none-any.whl → 3.0.5__py3-none-any.whl

rapidtide/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2025-05-06T11:02:28-0400",
+ "date": "2025-05-07T20:47:14-0400",
  "dirty": false,
  "error": null,
- "full-revisionid": "c5e5e2f38938a78c3439882e8ad596c483c6adcf",
- "version": "3.0.4"
+ "full-revisionid": "ea9d8f413eaa094534d2da7318765380528980fe",
+ "version": "3.0.5"
 }
 '''  # END VERSION_JSON
 

rapidtide/io.py

@@ -1426,6 +1426,8 @@ def writebidstsv(
     yaxislabel="arbitrary value",
     starttime=0.0,
     append=False,
+    samplerate_tolerance=1e-6,
+    starttime_tolerance=1e-6,
     colsinjson=True,
     colsintsv=False,
     omitjson=False,
@@ -1498,8 +1500,8 @@ def writebidstsv(
                 )
             compressed = incompressed
             if (
-                (insamplerate == samplerate)
-                and (instarttime == starttime)
+                np.fabs(insamplerate - samplerate) < samplerate_tolerance
+                and np.fabs(instarttime - starttime) < starttime_tolerance
                 and reshapeddata.shape[1] == indata.shape[1]
             ):
                 startcol = len(incolumns)

rapidtide/workflows/rapidtide_parser.py

@@ -1916,7 +1916,7 @@ def process_args(inputargs=None):
 
     if args["in_file"].endswith("txt") and args["realtr"] == "auto":
         raise ValueError(
-            "Either --datatstep or --datafreq must be provided " "if data file is a text file."
+            "Either --datatstep or --datafreq must be provided if data file is a text file."
         )
 
     if args["realtr"] != "auto":
@@ -1925,7 +1925,7 @@ def process_args(inputargs=None):
         if tide_io.checkifcifti(args["in_file"]):
             fmri_tr, dummy = tide_io.getciftitr(nib.load(args["in_file"]).header)
         else:
-            fmri_tr = nib.load(args["in_file"]).header.get_zooms()[3]
+            fmri_tr, dummy = tide_io.fmritimeinfo(args["in_file"])
     args["realtr"] = fmri_tr
 
     if args["inputfreq"] == "auto":

rapidtide/workflows/simdata.py

@@ -53,46 +53,44 @@ def _get_parser():
 
     for band in ["lfo", "resp", "cardiac"]:
         parser.add_argument(
-            "--" + band + "pctfile",
-            dest=(band + "pctfile"),
+            f"--{band}pctfile",
+            dest=(f"{band}pctfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=(
-                "3D NIFTI file with the " + band + " amplitude in percent of mean at every point"
-            ),
+            help=(f"3D NIFTI file with the {band} amplitude in percent of mean at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "lagfile",
-            dest=(band + "lagfile"),
+            f"--{band}lagfile",
+            dest=(f"{band}lagfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("3D NIFTI file with the " + band + " delay value in seconds at every point"),
+            help=(f"3D NIFTI file with the {band} delay value in seconds at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "regressor",
-            dest=(band + "regressor"),
+            f"--{band}regressor",
+            dest=(f"{band}regressor"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("The LFO regressor text file"),
+            help=(f"The {band} regressor text file"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "samprate",
-            dest=(band + "samprate"),
+            f"--{band}samprate",
+            dest=(f"{band}samprate"),
             action="store",
             type=float,
             metavar="SAMPRATE",
-            help=("The sample rate of the LFO regressor file, in Hz"),
+            help=(f"The sample rate of the {band} regressor file, in Hz"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "starttime",
-            dest=(band + "starttime"),
+            f"--{band}starttime",
+            dest=(f"{band}starttime"),
             action="store",
             type=float,
             metavar="STARTTIME",
@@ -317,7 +315,7 @@ def simdata(args):
         sliceoffsettimes *= fmritr
 
     nim_fmri, fmridata, fmriheader, fmridims, fmrisizes = tide_io.readfromnifti(args.fmrifilename)
-    print("fmri data: ", numtrs, " timepoints, tr = ", fmritr)
+    print(f"fmri data: {numtrs} timepoints, tr = {fmritr}")
 
     # prepare the output timepoints
     initial_fmri_x = (
@@ -328,12 +326,8 @@ def simdata(args):
     )
     print("length of fmri after removing skip:", len(initial_fmri_x))
     print(
-        "fmri time has length",
-        len(initial_fmri_x),
-        "and runs runs from ",
-        initial_fmri_x[0],
-        " to ",
-        initial_fmri_x[-1],
+        f"fmri time has length {len(initial_fmri_x)}",
+        f"and runs runs from {initial_fmri_x[0]} to {initial_fmri_x[-1]}",
     )
 
     # read in the immean file

{rapidtide-3.0.4.dist-info → rapidtide-3.0.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.4
+Version: 3.0.5
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.4.dist-info → rapidtide-3.0.5.dist-info}/RECORD

@@ -12,7 +12,7 @@ rapidtide/OrthoImageItem.py,sha256=w70QNZUelMI7wTWYaqOfkJEb38PdsxgSf0NLdyjlcNs,2
 rapidtide/RapidtideDataset.py,sha256=sccBQf8T9zvOMSHHXG7pwEm-sUyzbyZ4i0rFuWMwj3A,52343
 rapidtide/RegressorRefiner.py,sha256=dPG9Vy2nlqxv2Mx9vrYtgYTsNGcVIwWknawDrNdpZxQ,17232
 rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
-rapidtide/_version.py,sha256=0MHhgNI7KG1HtW-Vg40MoyavbE1Adm-tJtYun_DiOpY,497
+rapidtide/_version.py,sha256=3OU9TRfkXZJGKZEHjxydZN1ypyAIfk88M2iVvYOHK_0,497
 rapidtide/calcandfitcorrpairs.py,sha256=dlKxjKSlgCF9AF_dRoPeIGc9dz1DIluYfKLQzTSQsd0,7397
 rapidtide/calccoherence.py,sha256=VayovUVA5X-eWmjJG0GNxI_Giw7vRjTDFvWcV6NVfq0,4512
 rapidtide/calcnullsimfunc.py,sha256=92q7Yw8VeSjA9UfcD-hHN9MgoaUcoKuR9VGBmt_n45M,7150
@@ -25,7 +25,7 @@ rapidtide/filter.py,sha256=GySR0UdlrfNzWs9HOdvsIGlfHKThT9KdamNk0Y0JHeU,71647
 rapidtide/fit.py,sha256=whveHKtqC-cPWxclCf86-5iBAtXOdXL2G1yg082q6R8,67955
 rapidtide/happy_supportfuncs.py,sha256=NlcZdD7wXQ65xYaB_t035PeSBC-FxbTy6x4B272q5x0,41968
 rapidtide/helper_classes.py,sha256=2m2zcFUgE12JhYL0HQJEafJ1pFa0Zsb46Lpi9iw3Qbg,51470
-rapidtide/io.py,sha256=mhfQpH4lD8lFIkbPRXuG7p2h9IFRWWENWcY-x9mdfIA,74919
+rapidtide/io.py,sha256=A3qFJdFFf1XSVlqPvoOF733OoxrRcbRO-gSEoh_95bE,75037
 rapidtide/linfitfiltpass.py,sha256=fR8vQQrH8yfXyaMNNsELA7xCv_Ro7qpZSXX_PbIFtx0,16142
 rapidtide/makelaggedtcs.py,sha256=XC0-tTKfcV4qQeoOlF3PiAdbvMuDZetrifsmWc0wQTw,3998
 rapidtide/maskutil.py,sha256=IBEgxmHvQ2fnBoTeFu7vw_w3uf91NxpW3IgTDirhWH0,10890
@@ -325,7 +325,7 @@ rapidtide/workflows/proj2flow.py,sha256=SbkYTRZ_SViVfiM0QJjo20RrICtbsQpEd2i9o9XD
 rapidtide/workflows/rankimage.py,sha256=9opJb3OikO69wtN8zgF3XJxgoHy1-erzZiDKs8pDM6U,3482
 rapidtide/workflows/rapidtide.py,sha256=KdSgXM6PFA7ZScSlW3oqV7iD7XNViqul1dSP8V_SWNw,153985
 rapidtide/workflows/rapidtide2std.py,sha256=coxEnRAof6NNpeXjjECPazx5Wotf4l1SJCnaVEvmHQY,10483
-rapidtide/workflows/rapidtide_parser.py,sha256=gJ9YPEi7dwkaw04jsfzqTI3W2GJDtaP8MSZhDqX4Cpk,78250
+rapidtide/workflows/rapidtide_parser.py,sha256=iBJ1H2VFCqQznRxvMyhDnQEfa9higvZBfUjzqFX0x4M,78244
 rapidtide/workflows/regressfrommaps.py,sha256=2qkD6e3wJ7Wo4M3xsQBHGOlzoZkz6IJv8vT92kv5RZE,5355
 rapidtide/workflows/resamplenifti.py,sha256=GJE7f8bzMRY3QYiMYZOD8bDnga4ah97sp-ZL3yaaIFA,4717
 rapidtide/workflows/resampletc.py,sha256=B4YIKn3qpDaM9dIhYjGwPl-2LtaEhm9fnMBzfBgAUSs,3959
@@ -339,7 +339,7 @@ rapidtide/workflows/showstxcorr.py,sha256=FulltRbjGaBBIIRF9Wc_4oU2bpmMjfc3tZus5T
 rapidtide/workflows/showtc.py,sha256=mddcdbpRzLXIiTqnutVqQapa9fudAeK3uALBVgM-dDE,18835
 rapidtide/workflows/showxcorrx.py,sha256=pPGIUqF7cVuPmq8aaZ-OSup6akeKQC85fJPqUEyG31w,31370
 rapidtide/workflows/showxy.py,sha256=p-1pkE5cKVd2zMQ-kSI3-Xk21jHSLiQPa-ql1DIO-vc,10532
-rapidtide/workflows/simdata.py,sha256=Cyr_6ByERUiDbXQmJUOlwxLxlA4RagpIBfBILJU-BJs,13920
+rapidtide/workflows/simdata.py,sha256=YahDPmVM-lOV1qgpbfkq6QwrS2Pa99IRlfMglNXDQ1I,13827
 rapidtide/workflows/spatialfit.py,sha256=2p_f7nqYKauLTvwmhyfn7FiJ1BMzFsRxHfCQe2ULoXk,9136
 rapidtide/workflows/spatialmi.py,sha256=_Vvb2lukopzNh9QL9g6XBRvTlartZgq6Fzc2je-sbY8,13407
 rapidtide/workflows/spectrogram.py,sha256=7_CzFgX9ppE_2C4GiSP235BRUoh3YspCR_57_5Lx4HA,6452
@@ -349,9 +349,9 @@ rapidtide/workflows/tcfrom3col.py,sha256=kV3V-qZ7A7LkD96aHVXabvohA8udsflHXnzsQIw
 rapidtide/workflows/tidepool.py,sha256=Cac0zhS2ZT6myY_H2A0dAIox8ZoFyf42iB3flSb0qbw,86612
 rapidtide/workflows/utils.py,sha256=urIN-042oUCRDusVUSjBelVN3Te2JP3svY3ckq-yBMU,5379
 rapidtide/workflows/variabilityizer.py,sha256=h7Hhrxn84MclRfbAvKIZJoNzlcKO-8d9lZ6y6YFStk8,3167
-rapidtide-3.0.4.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-rapidtide-3.0.4.dist-info/METADATA,sha256=W5hEm79xTNzz1vj8p1TfVUWbbB_hcxshHUKx1Morpu4,15688
-rapidtide-3.0.4.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-rapidtide-3.0.4.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
-rapidtide-3.0.4.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
-rapidtide-3.0.4.dist-info/RECORD,,
+rapidtide-3.0.5.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+rapidtide-3.0.5.dist-info/METADATA,sha256=T7MB_JdlZs48d-PfR-Xrtv5rOEE_BPrsnRBE-Y_Fhdw,15688
+rapidtide-3.0.5.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
+rapidtide-3.0.5.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
+rapidtide-3.0.5.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
+rapidtide-3.0.5.dist-info/RECORD,,