rapidtide 3.0.3__py3-none-any.whl → 3.0.5__py3-none-any.whl

rapidtide/io.py

@@ -1426,6 +1426,8 @@ def writebidstsv(
     yaxislabel="arbitrary value",
     starttime=0.0,
     append=False,
+    samplerate_tolerance=1e-6,
+    starttime_tolerance=1e-6,
     colsinjson=True,
     colsintsv=False,
     omitjson=False,
@@ -1498,8 +1500,8 @@ def writebidstsv(
                 )
             compressed = incompressed
             if (
-                (insamplerate == samplerate)
-                and (instarttime == starttime)
+                np.fabs(insamplerate - samplerate) < samplerate_tolerance
+                and np.fabs(instarttime - starttime) < starttime_tolerance
                 and reshapeddata.shape[1] == indata.shape[1]
             ):
                 startcol = len(incolumns)
@@ -1938,7 +1940,12 @@ def parsefilespec(filespec, debug=False):
     if debug:
         print(f"PARSEFILESPEC: input string >>>{filespec}<<<")
         print(f"PARSEFILESPEC: platform is {platform.system()}")
-    if filespec[1] == ":" and platform.system() == "Windows":
+
+    specialcase = False
+    if len(inputlist) > 1:
+        if filespec[1] == ":" and platform.system() == "Windows":
+            specialcase = True
+    if specialcase:
         thefilename = ":".join([inputlist[0], inputlist[1]])
         if len(inputlist) == 3:
             thecolspec = inputlist[2]

rapidtide/tests/test_fullrunrapidtide_v1.py

@@ -23,7 +23,6 @@ import matplotlib as mpl
 import rapidtide.qualitycheck as rapidtide_quality
 import rapidtide.workflows.rapidtide as rapidtide_workflow
 import rapidtide.workflows.rapidtide_parser as rapidtide_parser
-import rapidtide.workflows.retroregress as rapidtide_retroregress
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
@@ -57,7 +56,6 @@ def test_fullrunrapidtide_v1(debug=False, local=False, displayplots=False):
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
     rapidtide_quality.qualitycheck(os.path.join(testtemproot, "sub-RAPIDTIDETEST1"))
 
-
     # test fixval
     inputargs = [
         os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),

rapidtide/tests/test_getparsers.py

@@ -0,0 +1,140 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import numpy as np
+
+from rapidtide.workflows.adjustoffset import _get_parser as adjustoffset_getparser
+from rapidtide.workflows.aligntcs import _get_parser as aligntcs_getparser
+from rapidtide.workflows.applydlfilter import _get_parser as applydlfilter_getparser
+from rapidtide.workflows.atlasaverage import _get_parser as atlasaverage_getparser
+from rapidtide.workflows.atlastool import _get_parser as atlastool_getparser
+from rapidtide.workflows.calctexticc import _get_parser as calctexticc_getparser
+from rapidtide.workflows.ccorrica import _get_parser as ccorrica_getparser
+from rapidtide.workflows.delayvar import _get_parser as delayvar_getparser
+from rapidtide.workflows.diffrois import _get_parser as diffrois_getparser
+from rapidtide.workflows.endtidalproc import _get_parser as endtidalproc_getparser
+from rapidtide.workflows.fdica import _get_parser as fdica_getparser
+from rapidtide.workflows.filtnifti import _get_parser as filtnifti_getparser
+from rapidtide.workflows.filttc import _get_parser as filttc_getparser
+from rapidtide.workflows.fixtr import _get_parser as fixtr_getparser
+from rapidtide.workflows.gmscalc import _get_parser as gmscalc_getparser
+from rapidtide.workflows.happy_parser import _get_parser as happy_parser_getparser
+from rapidtide.workflows.happy2std import _get_parser as happy2std_getparser
+from rapidtide.workflows.histnifti import _get_parser as histnifti_getparser
+from rapidtide.workflows.histtc import _get_parser as histtc_getparser
+from rapidtide.workflows.linfitfilt import _get_parser as linfitfilt_getparser
+from rapidtide.workflows.localflow import _get_parser as localflow_getparser
+from rapidtide.workflows.mergequality import _get_parser as mergequality_getparser
+from rapidtide.workflows.niftidecomp import _get_parser_temporal as niftidecomp_getparser_temporal
+from rapidtide.workflows.niftidecomp import _get_parser_spatial as niftidecomp_getparser_spatial
+from rapidtide.workflows.niftistats import _get_parser as niftistats_getparser
+from rapidtide.workflows.pairproc import _get_parser as pairproc_getparser
+from rapidtide.workflows.pairwisemergenifti import _get_parser as pairwisemergenifti_getparser
+from rapidtide.workflows.physiofreq import _get_parser as physiofreq_getparser
+from rapidtide.workflows.pixelcomp import _get_parser as pixelcomp_getparser
+from rapidtide.workflows.plethquality import _get_parser as plethquality_getparser
+from rapidtide.workflows.polyfitim import _get_parser as polyfitim_getparser
+from rapidtide.workflows.proj2flow import _get_parser as proj2flow_getparser
+from rapidtide.workflows.rankimage import _get_parser as rankimage_getparser
+from rapidtide.workflows.rapidtide2std import _get_parser as rapidtide2std_getparser
+from rapidtide.workflows.resamplenifti import _get_parser as resamplenifti_getparser
+from rapidtide.workflows.resampletc import _get_parser as resampletc_getparser
+from rapidtide.workflows.retrolagtcs import _get_parser as retrolagtcs_getparser
+from rapidtide.workflows.retroregress import _get_parser as retroregress_getparser
+from rapidtide.workflows.roisummarize import _get_parser as roisummarize_getparser
+from rapidtide.workflows.runqualitycheck import _get_parser as runqualitycheck_getparser
+from rapidtide.workflows.showarbcorr import _get_parser as showarbcorr_getparser
+from rapidtide.workflows.showhist import _get_parser as showhist_getparser
+from rapidtide.workflows.showstxcorr import _get_parser as showstxcorr_getparser
+from rapidtide.workflows.showtc import _get_parser as showtc_getparser
+from rapidtide.workflows.showxcorrx import _get_parser as showxcorrx_getparser
+from rapidtide.workflows.showxy import _get_parser as showxy_getparser
+from rapidtide.workflows.simdata import _get_parser as simdata_getparser
+from rapidtide.workflows.spatialfit import _get_parser as spatialfit_getparser
+from rapidtide.workflows.spatialmi import _get_parser as spatialmi_getparser
+from rapidtide.workflows.spectrogram import _get_parser as spectrogram_getparser
+from rapidtide.workflows.synthASL import _get_parser as synthASL_getparser
+from rapidtide.workflows.tcfrom2col import _get_parser as tcfrom2col_getparser
+from rapidtide.workflows.tcfrom3col import _get_parser as tcfrom3col_getparser
+from rapidtide.workflows.variabilityizer import _get_parser as variabilityizer_getparser
+
+
+def test_parsers(debug=False):
+    parserlist = [ adjustoffset_getparser,
+        aligntcs_getparser,
+        applydlfilter_getparser,
+        atlasaverage_getparser,
+        atlastool_getparser,
+        calctexticc_getparser,
+        ccorrica_getparser,
+        delayvar_getparser,
+        diffrois_getparser,
+        endtidalproc_getparser,
+        fdica_getparser,
+        filtnifti_getparser,
+        filttc_getparser,
+        fixtr_getparser,
+        gmscalc_getparser,
+        happy_parser_getparser,
+        happy2std_getparser,
+        histnifti_getparser,
+        histtc_getparser,
+        linfitfilt_getparser,
+        localflow_getparser,
+        mergequality_getparser,
+        niftidecomp_getparser_temporal,
+        niftidecomp_getparser_spatial,
+        niftistats_getparser,
+        pairproc_getparser,
+        pairwisemergenifti_getparser,
+        physiofreq_getparser,
+        pixelcomp_getparser,
+        plethquality_getparser,
+        polyfitim_getparser,
+        proj2flow_getparser,
+        rankimage_getparser,
+        rapidtide2std_getparser,
+        resamplenifti_getparser,
+        resampletc_getparser,
+        retrolagtcs_getparser,
+        retroregress_getparser,
+        roisummarize_getparser,
+        runqualitycheck_getparser,
+        showarbcorr_getparser,
+        showhist_getparser,
+        showstxcorr_getparser,
+        showtc_getparser,
+        showxcorrx_getparser,
+        showxy_getparser,
+        simdata_getparser,
+        spatialfit_getparser,
+        spatialmi_getparser,
+        spectrogram_getparser,
+        synthASL_getparser,
+        tcfrom2col_getparser,
+        tcfrom3col_getparser,
+        variabilityizer_getparser ]
+
+    for thegetparser in parserlist:
+        theusage = thegetparser().format_help()
+        if debug:
+            print(theusage)
+
+
+if __name__ == "__main__":
+    test_parsers(debug=True)

rapidtide/tests/test_parserfuncs.py

@@ -0,0 +1,70 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import os
+import argparse
+import rapidtide.workflows.parser_funcs as pf
+from rapidtide.tests.utils import get_examples_path, get_test_temp_path
+
+def _get_parser():
+    """
+    Argument parser for adjust offset
+    """
+    parser = argparse.ArgumentParser(
+        prog="dummy",
+        description="dummy",
+        allow_abbrev=False,
+    )
+
+    # Required arguments
+    parser.add_argument(
+        "inputmap",
+        type=lambda x: pf.is_valid_file(parser, x),
+        help="The name of the rapidtide maxtime map.",
+    )
+
+    return parser
+
+
+def test_parserfuncs(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
+
+    theparser = _get_parser()
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+    #filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseriesxyz.json")
+    #retval = pf.is_valid_file(theparser, filename)
+    #print(filename, retval)
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json:acolname")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+
+if __name__ == "__main__":
+    test_parserfuncs(debug=True, local=True, displayplots=True)

rapidtide/tests/test_zRapidtideDataset.py

@@ -59,7 +59,9 @@ def main(runninglocally=False):
         verbose=verbose,
     )
 
+    print("getting overlays")
     theoverlays = thesubject.getoverlays()
+    print("getting regressors")
     theregressors = thesubject.getregressors()
 
     assert thesubject.focusregressor == "prefilt"

rapidtide/workflows/rapidtide.py

@@ -3463,7 +3463,7 @@ def rapidtide_main(argparsingfunc):
             cifti_hdr=theinputdata.cifti_hdr,
         )
 
-        if optiondict["refinedelay"] and False:
+        if optiondict["refinedelay"]:
             # filter the fmri data to the lfo band
             print("filtering fmri_data to sLFO band")
             for i in range(fmri_data_valid.shape[0]):
@@ -3504,7 +3504,13 @@ def rapidtide_main(argparsingfunc):
             )
 
             maplist = [
-                (rvalue, "maxcorralt", "map", None, "R value of the inband sLFO fit, with sign"),
+                (
+                    rvalue,
+                    "maxcorrrefined",
+                    "map",
+                    None,
+                    "R value of the inband sLFO fit, with sign",
+                ),
             ]
 
             tide_io.savemaplist(

rapidtide/workflows/rapidtide2std.py

@@ -187,8 +187,10 @@ def rapidtide2std(args):
 
     thefmrimaps = [
         "desc-maxtime_map",
+        "desc-maxtimerefined_map",
         "desc-timepercentile_map",
         "desc-maxcorr_map",
+        "desc-maxcorrrefined_map",
         "desc-maxwidth_map",
         "desc-MTT_map",
         "desc-corrfit_mask",

rapidtide/workflows/rapidtide_parser.py

@@ -1916,7 +1916,7 @@ def process_args(inputargs=None):
 
     if args["in_file"].endswith("txt") and args["realtr"] == "auto":
         raise ValueError(
-            "Either --datatstep or --datafreq must be provided " "if data file is a text file."
+            "Either --datatstep or --datafreq must be provided if data file is a text file."
         )
 
     if args["realtr"] != "auto":
@@ -1925,7 +1925,7 @@ def process_args(inputargs=None):
         if tide_io.checkifcifti(args["in_file"]):
             fmri_tr, dummy = tide_io.getciftitr(nib.load(args["in_file"]).header)
         else:
-            fmri_tr = nib.load(args["in_file"]).header.get_zooms()[3]
+            fmri_tr, dummy = tide_io.fmritimeinfo(args["in_file"])
     args["realtr"] = fmri_tr
 
     if args["inputfreq"] == "auto":

rapidtide/workflows/retroregress.py

@@ -20,6 +20,7 @@ import argparse
 import copy
 import logging
 import os
+import platform
 import sys
 import time
 from pathlib import Path
@@ -163,13 +164,13 @@ def _get_parser():
         default=True,
     )
     parser.add_argument(
-        "--refinecorr",
+        "--norefinecorr",
         dest="refinecorr",
-        action="store_true",
+        action="store_false",
         help=(
-            "Recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
+            "Don't recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
         ),
-        default=False,
+        default=True,
     )
     parser.add_argument(
         "--nofilterwithrefineddelay",
@@ -819,6 +820,10 @@ def retroregress(args):
         ]
         anatomicmasks = []
         for thisanatomic in anatomiclist:
+            try:
+                thename = therunoptions[thisanatomic[0]]
+            except KeyError:
+                therunoptions[thisanatomic[0]] = None
             if therunoptions[thisanatomic[0]] is not None:
                 anatomicmasks.append(
                     tide_mask.readamask(
@@ -1237,13 +1242,13 @@ def retroregress(args):
         TimingLGR.info("Finishing output save")
 
         if args.refinecorr:
-            TimingLGR.info("Filtering for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation start")
             for thevoxel in range(fmri_data_valid.shape[0]):
                 fmri_data_valid[thevoxel, :] = theprefilter.apply(
                     1.0 / fmritr, fmri_data_valid[thevoxel, :]
                 )
-            TimingLGR.info("Filtering for maxcorralt calculation complete")
-            TimingLGR.info("GLM for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation complete")
+            TimingLGR.info("GLM for maxcorrrefined calculation start")
             voxelsprocessed_regressionfilt, regressorset, evset = (
                 tide_regressfrommaps.regressfrommaps(
                     fmri_data_valid,
@@ -1275,7 +1280,7 @@ def retroregress(args):
                 )
             )
             TimingLGR.info(
-                "GLM for maxcorralt calculation done",
+                "GLM for maxcorrrefined calculation done",
                 {
                     "message2": voxelsprocessed_regressionfilt,
                     "message3": "voxels",
@@ -1285,7 +1290,7 @@ def retroregress(args):
             maplist = [
                 (
                     rvalue,
-                    "maxcorralt",
+                    "maxcorrrefined",
                     "map",
                     None,
                     "R value for the lfo component of the delayed regressor, with sign",
@@ -1385,6 +1390,14 @@ def retroregress(args):
     therunoptions["retroregress_runtime"] = time.strftime(
         "%a, %d %b %Y %H:%M:%S %Z", time.localtime(time.time())
     )
+    (
+        therunoptions["retroregress_release_version"],
+        therunoptions["retroregress_git_sha"],
+        therunoptions["retroregress_git_date"],
+        therunoptions["retroregress_git_isdirty"],
+    ) = tide_util.version()
+    therunoptions["retroregress_python_version"] = str(sys.version_info)
+    therunoptions["retroregress_nodename"] = platform.node()
 
     # clean up shared memory
     if usesharedmem:

rapidtide/workflows/simdata.py

@@ -53,46 +53,44 @@ def _get_parser():
 
     for band in ["lfo", "resp", "cardiac"]:
         parser.add_argument(
-            "--" + band + "pctfile",
-            dest=(band + "pctfile"),
+            f"--{band}pctfile",
+            dest=(f"{band}pctfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=(
-                "3D NIFTI file with the " + band + " amplitude in percent of mean at every point"
-            ),
+            help=(f"3D NIFTI file with the {band} amplitude in percent of mean at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "lagfile",
-            dest=(band + "lagfile"),
+            f"--{band}lagfile",
+            dest=(f"{band}lagfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("3D NIFTI file with the " + band + " delay value in seconds at every point"),
+            help=(f"3D NIFTI file with the {band} delay value in seconds at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "regressor",
-            dest=(band + "regressor"),
+            f"--{band}regressor",
+            dest=(f"{band}regressor"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("The LFO regressor text file"),
+            help=(f"The {band} regressor text file"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "samprate",
-            dest=(band + "samprate"),
+            f"--{band}samprate",
+            dest=(f"{band}samprate"),
             action="store",
             type=float,
             metavar="SAMPRATE",
-            help=("The sample rate of the LFO regressor file, in Hz"),
+            help=(f"The sample rate of the {band} regressor file, in Hz"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "starttime",
-            dest=(band + "starttime"),
+            f"--{band}starttime",
+            dest=(f"{band}starttime"),
             action="store",
             type=float,
             metavar="STARTTIME",
@@ -317,7 +315,7 @@ def simdata(args):
         sliceoffsettimes *= fmritr
 
     nim_fmri, fmridata, fmriheader, fmridims, fmrisizes = tide_io.readfromnifti(args.fmrifilename)
-    print("fmri data: ", numtrs, " timepoints, tr = ", fmritr)
+    print(f"fmri data: {numtrs} timepoints, tr = {fmritr}")
 
     # prepare the output timepoints
     initial_fmri_x = (
@@ -328,12 +326,8 @@ def simdata(args):
     )
     print("length of fmri after removing skip:", len(initial_fmri_x))
     print(
-        "fmri time has length",
-        len(initial_fmri_x),
-        "and runs runs from ",
-        initial_fmri_x[0],
-        " to ",
-        initial_fmri_x[-1],
+        f"fmri time has length {len(initial_fmri_x)}",
+        f"and runs runs from {initial_fmri_x[0]} to {initial_fmri_x[-1]}",
     )
 
     # read in the immean file

rapidtide/workflows/tidepool.py

@@ -1982,6 +1982,12 @@ def tidepool(args):
             "display": True,
             "funcmask": "p_lt_0p050_mask",
         },
+        "lagstrengthsrefined": {
+            "colormap": gen_thermal_state(),
+            "label": "Refined similarity coefficient",
+            "display": True,
+            "funcmask": "p_lt_0p050_mask",
+        },
         "lagsigma": {
             "colormap": gen_plasma_state(),
             "label": "Similarity width",

{rapidtide-3.0.3.dist-info → rapidtide-3.0.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.3
+Version: 3.0.5
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.3.dist-info → rapidtide-3.0.5.dist-info}/RECORD

@@ -9,10 +9,10 @@ cloud/simple-cp-test,sha256=5ef8wmLfcKdny59BV6_DnAPj7O_mi0rOHdFZVN2iiLA,421
 rapidtide/Colortables.py,sha256=OVtgnQ9xTJPgfdyK1ktESHRjBh09cxLVPZvgUvV5jOo,5814
 rapidtide/DerivativeDelay.py,sha256=B3ElHcaAvxH3qB0n6l4rIX5FXsRHp_PE_H3ky-5XdoQ,7107
 rapidtide/OrthoImageItem.py,sha256=w70QNZUelMI7wTWYaqOfkJEb38PdsxgSf0NLdyjlcNs,21669
-rapidtide/RapidtideDataset.py,sha256=BdchNX8aqcPW8dmjJQPNnmAYX0wFMMIJCLdVG3EokT4,52241
+rapidtide/RapidtideDataset.py,sha256=sccBQf8T9zvOMSHHXG7pwEm-sUyzbyZ4i0rFuWMwj3A,52343
 rapidtide/RegressorRefiner.py,sha256=dPG9Vy2nlqxv2Mx9vrYtgYTsNGcVIwWknawDrNdpZxQ,17232
 rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
-rapidtide/_version.py,sha256=w4vUyi4REvA9LeJul_uv8AcuFACKR4WIGQRoh2xocL8,24506
+rapidtide/_version.py,sha256=3OU9TRfkXZJGKZEHjxydZN1ypyAIfk88M2iVvYOHK_0,497
 rapidtide/calcandfitcorrpairs.py,sha256=dlKxjKSlgCF9AF_dRoPeIGc9dz1DIluYfKLQzTSQsd0,7397
 rapidtide/calccoherence.py,sha256=VayovUVA5X-eWmjJG0GNxI_Giw7vRjTDFvWcV6NVfq0,4512
 rapidtide/calcnullsimfunc.py,sha256=92q7Yw8VeSjA9UfcD-hHN9MgoaUcoKuR9VGBmt_n45M,7150
@@ -25,7 +25,7 @@ rapidtide/filter.py,sha256=GySR0UdlrfNzWs9HOdvsIGlfHKThT9KdamNk0Y0JHeU,71647
 rapidtide/fit.py,sha256=whveHKtqC-cPWxclCf86-5iBAtXOdXL2G1yg082q6R8,67955
 rapidtide/happy_supportfuncs.py,sha256=NlcZdD7wXQ65xYaB_t035PeSBC-FxbTy6x4B272q5x0,41968
 rapidtide/helper_classes.py,sha256=2m2zcFUgE12JhYL0HQJEafJ1pFa0Zsb46Lpi9iw3Qbg,51470
-rapidtide/io.py,sha256=nHhCJCiL_XgB5DY75_64cx6dYq1muohfrTZUlh5fVD8,74812
+rapidtide/io.py,sha256=A3qFJdFFf1XSVlqPvoOF733OoxrRcbRO-gSEoh_95bE,75037
 rapidtide/linfitfiltpass.py,sha256=fR8vQQrH8yfXyaMNNsELA7xCv_Ro7qpZSXX_PbIFtx0,16142
 rapidtide/makelaggedtcs.py,sha256=XC0-tTKfcV4qQeoOlF3PiAdbvMuDZetrifsmWc0wQTw,3998
 rapidtide/maskutil.py,sha256=IBEgxmHvQ2fnBoTeFu7vw_w3uf91NxpW3IgTDirhWH0,10890
@@ -235,13 +235,14 @@ rapidtide/tests/test_fullrunhappy_v2.py,sha256=KvibzQKw3HceMAltX19ZzgxtJ5w4LdKci
 rapidtide/tests/test_fullrunhappy_v3.py,sha256=Oy2UoFy4Tiye0fNuSsh9bF4PlclGHc6oGlKCoAdCOXc,1950
 rapidtide/tests/test_fullrunhappy_v4.py,sha256=n3LylIDexTly06sk5TUnrQhfizkf98Mo4VEaw3uNkr4,1960
 rapidtide/tests/test_fullrunhappy_v5.py,sha256=BK240KjaJs9mHFgTmsDjCW3miBd4dDTn6qZxAYD3HTA,1896
-rapidtide/tests/test_fullrunrapidtide_v1.py,sha256=42alaL-si5kPrtE-9QZ-zgCV__YsHxjqVoxidn65qdA,3162
+rapidtide/tests/test_fullrunrapidtide_v1.py,sha256=XhMjNG0EIyzGnGaI6Q_imSkjFDyScx1y-bwAWBlzC2w,3095
 rapidtide/tests/test_fullrunrapidtide_v2.py,sha256=KOuKoY5-Ryry7rlpIp-OzmCW2rYqGMIDa6JYqt57Tjk,3138
 rapidtide/tests/test_fullrunrapidtide_v3.py,sha256=i9RZCJ7ZieYnH0eIC38FuyN_uV9stDwuPuUoSVKJzXo,2889
 rapidtide/tests/test_fullrunrapidtide_v4.py,sha256=DTEom1FPHn21WZZveiCCf4L_NabR9BMzLNoAA8RuDv0,2118
 rapidtide/tests/test_fullrunrapidtide_v5.py,sha256=NzTYGXaWsJzd7uIIgom_NPwl3EmGCRxlylaUEVN3gxU,1779
 rapidtide/tests/test_fullrunrapidtide_v6.py,sha256=qjxniiLjkA8sFK3_spNpF13PsN_6ONTB8VtcSYAZ_a0,4368
 rapidtide/tests/test_fullrunrapidtide_v7.py,sha256=MKZ1Xi2pl04eb-cdxe6BeWkKqFWFTXAPZu3L_s7QNJk,4250
+rapidtide/tests/test_getparsers.py,sha256=kSloiKUsoWSQnaHdCKYPUPmXX31KlmRXtUQyveW7Sxk,6830
 rapidtide/tests/test_io.py,sha256=bNl-Aa8JfBkghA8OmVKPcjO-YGGQmXEp-1d29peWszc,17093
 rapidtide/tests/test_linfitfiltpass.py,sha256=Q_XbDujj4tGc3X_I37IJJBDsvAs0m-S_oU8WG7DcGKU,5554
 rapidtide/tests/test_mi.py,sha256=Yia_TE1VxQfT0cZFdwsw6pb2l5E3PmY89zhKSfKus3g,2272
@@ -249,6 +250,7 @@ rapidtide/tests/test_miscmath.py,sha256=Kng7InnANKQeWPlY0ZwdIQnYT79U6sNH1w63pCx1
 rapidtide/tests/test_motionregress.py,sha256=HS8Ph4-5owWp8oK6bwdy1FelJxDA0FE045JUnitth-4,5588
 rapidtide/tests/test_nullcorr.py,sha256=cs39wIW8anDQMg13EtTQf_5kr7yT9SSSSve9_7QWm34,6446
 rapidtide/tests/test_padvec.py,sha256=41Pnm5zJkWeOXbM0dngS7mRkGwJ4es4O5aiEQ8YJ3rs,6728
+rapidtide/tests/test_parserfuncs.py,sha256=moebtQVwiQ_g0XMmaiAY-wnO9rcSEby6V66PBrM42NY,2203
 rapidtide/tests/test_phaseanalysis.py,sha256=6d9nuSsVLjHW1br2BXvJxVQMjFcbuUuYGNjt3t7-odk,2150
 rapidtide/tests/test_rapidtideparser.py,sha256=Dmf_48Kgw9UW2L5pr8bVT1j5rBx__veAdiaAmYpIYCQ,5555
 rapidtide/tests/test_refinedelay.py,sha256=PNDbnmyRvogCZGiq08MtCsPWWJtLB9zzLXk0fvjmYm8,8473
@@ -258,7 +260,7 @@ rapidtide/tests/test_simulate.py,sha256=9zLY3PxmLgXdQcDHX5B0INyhhB_KOjwpBZkIEDVc
 rapidtide/tests/test_stcorrelate.py,sha256=ExYA58MDvJt3qGZAbEHSg-aMKtIKAX_zTacxiA0mttE,2493
 rapidtide/tests/test_timeshift.py,sha256=J4aLZI0ZvnB-vJZEAqwrcsarGRfKkKSY7IToyuhlqcg,3045
 rapidtide/tests/test_valtoindex.py,sha256=z-_m8d4Zo5pMeH2-vOhFM62hD4M7zcNx8rMrFA78fTI,1179
-rapidtide/tests/test_zRapidtideDataset.py,sha256=omevoP3Al73Y59--XVP7kMY584B0c5ANxJcVtQ_5rg4,2168
+rapidtide/tests/test_zRapidtideDataset.py,sha256=kR0ILh_F7lmcBLaPYxLvjOyzUrUnwZF3iLyezLbgCsI,2230
 rapidtide/tests/usercustomize.py,sha256=iP8Vh35CixAbBD5He7gjQwmqYGItRGoNS_OD4sdDEe8,159
 rapidtide/tests/utils.py,sha256=qs3GlHZjfMXLgtdXfA-nIIoyWAKbpvTwxB_ZcyTvYnA,3254
 rapidtide/tests/testdata/100206_REST1_LR_cardfromfmri_25.0Hz.txt,sha256=w_ocCt0muJse-VZvqzPIBiveBo0Rp2sjoSP04Am0vgM,423304
@@ -321,14 +323,14 @@ rapidtide/workflows/plethquality.py,sha256=kTO74C5aSBmomzt59zs1VeiO_C5SPTxvyZZ0v
 rapidtide/workflows/polyfitim.py,sha256=bVKBrrFa0WjWZju4Lkrr8_9mFWALqCxkpCX28540GQA,10184
 rapidtide/workflows/proj2flow.py,sha256=SbkYTRZ_SViVfiM0QJjo20RrICtbsQpEd2i9o9XDgPU,7290
 rapidtide/workflows/rankimage.py,sha256=9opJb3OikO69wtN8zgF3XJxgoHy1-erzZiDKs8pDM6U,3482
-rapidtide/workflows/rapidtide.py,sha256=S91w9i1Gy_p9wBFxTzj-8dzcZDlsST1K0JcOYandVDk,153872
-rapidtide/workflows/rapidtide2std.py,sha256=8i1M5hKikYFA1JcrMYYqLRVgy0Mo7kwHUqImliO6c_0,10413
-rapidtide/workflows/rapidtide_parser.py,sha256=gJ9YPEi7dwkaw04jsfzqTI3W2GJDtaP8MSZhDqX4Cpk,78250
+rapidtide/workflows/rapidtide.py,sha256=KdSgXM6PFA7ZScSlW3oqV7iD7XNViqul1dSP8V_SWNw,153985
+rapidtide/workflows/rapidtide2std.py,sha256=coxEnRAof6NNpeXjjECPazx5Wotf4l1SJCnaVEvmHQY,10483
+rapidtide/workflows/rapidtide_parser.py,sha256=iBJ1H2VFCqQznRxvMyhDnQEfa9higvZBfUjzqFX0x4M,78244
 rapidtide/workflows/regressfrommaps.py,sha256=2qkD6e3wJ7Wo4M3xsQBHGOlzoZkz6IJv8vT92kv5RZE,5355
 rapidtide/workflows/resamplenifti.py,sha256=GJE7f8bzMRY3QYiMYZOD8bDnga4ah97sp-ZL3yaaIFA,4717
 rapidtide/workflows/resampletc.py,sha256=B4YIKn3qpDaM9dIhYjGwPl-2LtaEhm9fnMBzfBgAUSs,3959
 rapidtide/workflows/retrolagtcs.py,sha256=ep1Ve1GS9NqqE6Pw9kxeWyw78sEg-M1IV-KuSnivd7Y,10847
-rapidtide/workflows/retroregress.py,sha256=7mCtv7A0YulQPQUIUc1ebE0DbT9pxiEDewK0guJUF1Q,52061
+rapidtide/workflows/retroregress.py,sha256=sd7L_ri8av1euINcpKLgokrPGQo7QKQDguf0OWL8xD0,52631
 rapidtide/workflows/roisummarize.py,sha256=gnGcWOXRgRm6USgilj9K9Q3Mt5oUNCaincvJj1_ayPs,6710
 rapidtide/workflows/runqualitycheck.py,sha256=JIA2olhDk66HHSbLvsFrZieQq56YCIpbWpFzz0_ShHM,2434
 rapidtide/workflows/showarbcorr.py,sha256=mJpF2wSaMNw_jPZv4ru4x9x-rIOTDAABYZw7ZYesjF8,13606
@@ -337,19 +339,19 @@ rapidtide/workflows/showstxcorr.py,sha256=FulltRbjGaBBIIRF9Wc_4oU2bpmMjfc3tZus5T
 rapidtide/workflows/showtc.py,sha256=mddcdbpRzLXIiTqnutVqQapa9fudAeK3uALBVgM-dDE,18835
 rapidtide/workflows/showxcorrx.py,sha256=pPGIUqF7cVuPmq8aaZ-OSup6akeKQC85fJPqUEyG31w,31370
 rapidtide/workflows/showxy.py,sha256=p-1pkE5cKVd2zMQ-kSI3-Xk21jHSLiQPa-ql1DIO-vc,10532
-rapidtide/workflows/simdata.py,sha256=Cyr_6ByERUiDbXQmJUOlwxLxlA4RagpIBfBILJU-BJs,13920
+rapidtide/workflows/simdata.py,sha256=YahDPmVM-lOV1qgpbfkq6QwrS2Pa99IRlfMglNXDQ1I,13827
 rapidtide/workflows/spatialfit.py,sha256=2p_f7nqYKauLTvwmhyfn7FiJ1BMzFsRxHfCQe2ULoXk,9136
 rapidtide/workflows/spatialmi.py,sha256=_Vvb2lukopzNh9QL9g6XBRvTlartZgq6Fzc2je-sbY8,13407
 rapidtide/workflows/spectrogram.py,sha256=7_CzFgX9ppE_2C4GiSP235BRUoh3YspCR_57_5Lx4HA,6452
 rapidtide/workflows/synthASL.py,sha256=v4zkfrXbb6Y06IsAhSm3ZmL4UTPYWaK3vPnP3bKr-co,4971
 rapidtide/workflows/tcfrom2col.py,sha256=o7IEQ-YqN_VDu-f_9lme4DtSn8EbYCK5TCwGBGGr0YY,1936
 rapidtide/workflows/tcfrom3col.py,sha256=kV3V-qZ7A7LkD96aHVXabvohA8udsflHXnzsQIwiKug,1938
-rapidtide/workflows/tidepool.py,sha256=v67ONVgAv_CguVLmcvVu7g6SzG3uPwvBp-JhrB7xWPk,86396
+rapidtide/workflows/tidepool.py,sha256=Cac0zhS2ZT6myY_H2A0dAIox8ZoFyf42iB3flSb0qbw,86612
 rapidtide/workflows/utils.py,sha256=urIN-042oUCRDusVUSjBelVN3Te2JP3svY3ckq-yBMU,5379
 rapidtide/workflows/variabilityizer.py,sha256=h7Hhrxn84MclRfbAvKIZJoNzlcKO-8d9lZ6y6YFStk8,3167
-rapidtide-3.0.3.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-rapidtide-3.0.3.dist-info/METADATA,sha256=xVmotT3otkMEGyBKu2FoqxtEgVbeoq_81f-f8YSbAck,15688
-rapidtide-3.0.3.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-rapidtide-3.0.3.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
-rapidtide-3.0.3.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
-rapidtide-3.0.3.dist-info/RECORD,,
+rapidtide-3.0.5.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+rapidtide-3.0.5.dist-info/METADATA,sha256=T7MB_JdlZs48d-PfR-Xrtv5rOEE_BPrsnRBE-Y_Fhdw,15688
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+rapidtide-3.0.5.dist-info/RECORD,,