rapidtide 3.0.3__py3-none-any.whl → 3.0.4__py3-none-any.whl

rapidtide/RapidtideDataset.py

@@ -276,6 +276,7 @@ class Overlay:
             label=newlabel,
             report=self.report,
             init_LUT=init_LUT,
+            verbose=self.verbose,
         )
 
     def updateStats(self):
@@ -1145,6 +1146,7 @@ class RapidtideDataset:
                 ["lagtimesrefined", "desc-maxtimerefined_map"],
                 ["timepercentile", "desc-timepercentile_map"],
                 ["lagstrengths", "desc-maxcorr_map"],
+                ["lagstrengthsrefined", "desc-maxcorrrefined_map"],
                 ["lagsigma", "desc-maxwidth_map"],
                 ["MTT", "desc-MTT_map"],
                 ["R2", "desc-lfofilterR2_map"],

rapidtide/_version.py

@@ -1,683 +1,21 @@
 
-# This file helps to compute a version number in source trees obtained from
-# git-archive tarball (such as those provided by githubs download-from-tag
-# feature). Distribution tarballs (built by setup.py sdist) and build
-# directories (produced by setup.py build) will contain a much shorter file
-# that just contains the computed version number.
-
-# This file is released into the public domain.
-# Generated by versioneer-0.29
-# https://github.com/python-versioneer/python-versioneer
-
-"""Git implementation of _version.py."""
-
-import errno
-import functools
-import os
-import re
-import subprocess
-import sys
-from typing import Any, Callable, Dict, List, Optional, Tuple
-
-
-def get_keywords() -> Dict[str, str]:
-    """Get the keywords needed to look up the version information."""
-    # these strings will be replaced by git during git-archive.
-    # setup.py/versioneer.py will grep for the variable names, so they must
-    # each be defined on a line of their own. _version.py will just call
-    # get_keywords().
-    git_refnames = "$Format:%d$"
-    git_full = "$Format:%H$"
-    git_date = "$Format:%ci$"
-    keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
-    return keywords
-
-
-class VersioneerConfig:
-    """Container for Versioneer configuration parameters."""
-
-    VCS: str
-    style: str
-    tag_prefix: str
-    parentdir_prefix: str
-    versionfile_source: str
-    verbose: bool
-
-
-def get_config() -> VersioneerConfig:
-    """Create, populate and return the VersioneerConfig() object."""
-    # these strings are filled in when 'setup.py versioneer' creates
-    # _version.py
-    cfg = VersioneerConfig()
-    cfg.VCS = "git"
-    cfg.style = "pep440"
-    cfg.tag_prefix = "v"
-    cfg.parentdir_prefix = "rapidtide-"
-    cfg.versionfile_source = "rapidtide/_version.py"
-    cfg.verbose = False
-    return cfg
-
-
-class NotThisMethod(Exception):
-    """Exception raised if a method is not valid for the current scenario."""
-
-
-LONG_VERSION_PY: Dict[str, str] = {}
-HANDLERS: Dict[str, Dict[str, Callable]] = {}
-
-
-def register_vcs_handler(vcs: str, method: str) -> Callable:  # decorator
-    """Create decorator to mark a method as the handler of a VCS."""
-    def decorate(f: Callable) -> Callable:
-        """Store f in HANDLERS[vcs][method]."""
-        if vcs not in HANDLERS:
-            HANDLERS[vcs] = {}
-        HANDLERS[vcs][method] = f
-        return f
-    return decorate
-
-
-def run_command(
-    commands: List[str],
-    args: List[str],
-    cwd: Optional[str] = None,
-    verbose: bool = False,
-    hide_stderr: bool = False,
-    env: Optional[Dict[str, str]] = None,
-) -> Tuple[Optional[str], Optional[int]]:
-    """Call the given command(s)."""
-    assert isinstance(commands, list)
-    process = None
-
-    popen_kwargs: Dict[str, Any] = {}
-    if sys.platform == "win32":
-        # This hides the console window if pythonw.exe is used
-        startupinfo = subprocess.STARTUPINFO()
-        startupinfo.dwFlags |= subprocess.STARTF_USESHOWWINDOW
-        popen_kwargs["startupinfo"] = startupinfo
-
-    for command in commands:
-        try:
-            dispcmd = str([command] + args)
-            # remember shell=False, so use git.cmd on windows, not just git
-            process = subprocess.Popen([command] + args, cwd=cwd, env=env,
-                                       stdout=subprocess.PIPE,
-                                       stderr=(subprocess.PIPE if hide_stderr
-                                               else None), **popen_kwargs)
-            break
-        except OSError as e:
-            if e.errno == errno.ENOENT:
-                continue
-            if verbose:
-                print("unable to run %s" % dispcmd)
-                print(e)
-            return None, None
-    else:
-        if verbose:
-            print("unable to find command, tried %s" % (commands,))
-        return None, None
-    stdout = process.communicate()[0].strip().decode()
-    if process.returncode != 0:
-        if verbose:
-            print("unable to run %s (error)" % dispcmd)
-            print("stdout was %s" % stdout)
-        return None, process.returncode
-    return stdout, process.returncode
-
-
-def versions_from_parentdir(
-    parentdir_prefix: str,
-    root: str,
-    verbose: bool,
-) -> Dict[str, Any]:
-    """Try to determine the version from the parent directory name.
-
-    Source tarballs conventionally unpack into a directory that includes both
-    the project name and a version string. We will also support searching up
-    two directory levels for an appropriately named parent directory
-    """
-    rootdirs = []
-
-    for _ in range(3):
-        dirname = os.path.basename(root)
-        if dirname.startswith(parentdir_prefix):
-            return {"version": dirname[len(parentdir_prefix):],
-                    "full-revisionid": None,
-                    "dirty": False, "error": None, "date": None}
-        rootdirs.append(root)
-        root = os.path.dirname(root)  # up a level
-
-    if verbose:
-        print("Tried directories %s but none started with prefix %s" %
-              (str(rootdirs), parentdir_prefix))
-    raise NotThisMethod("rootdir doesn't start with parentdir_prefix")
-
-
-@register_vcs_handler("git", "get_keywords")
-def git_get_keywords(versionfile_abs: str) -> Dict[str, str]:
-    """Extract version information from the given file."""
-    # the code embedded in _version.py can just fetch the value of these
-    # keywords. When used from setup.py, we don't want to import _version.py,
-    # so we do it with a regexp instead. This function is not used from
-    # _version.py.
-    keywords: Dict[str, str] = {}
-    try:
-        with open(versionfile_abs, "r") as fobj:
-            for line in fobj:
-                if line.strip().startswith("git_refnames ="):
-                    mo = re.search(r'=\s*"(.*)"', line)
-                    if mo:
-                        keywords["refnames"] = mo.group(1)
-                if line.strip().startswith("git_full ="):
-                    mo = re.search(r'=\s*"(.*)"', line)
-                    if mo:
-                        keywords["full"] = mo.group(1)
-                if line.strip().startswith("git_date ="):
-                    mo = re.search(r'=\s*"(.*)"', line)
-                    if mo:
-                        keywords["date"] = mo.group(1)
-    except OSError:
-        pass
-    return keywords
-
-
-@register_vcs_handler("git", "keywords")
-def git_versions_from_keywords(
-    keywords: Dict[str, str],
-    tag_prefix: str,
-    verbose: bool,
-) -> Dict[str, Any]:
-    """Get version information from git keywords."""
-    if "refnames" not in keywords:
-        raise NotThisMethod("Short version file found")
-    date = keywords.get("date")
-    if date is not None:
-        # Use only the last line.  Previous lines may contain GPG signature
-        # information.
-        date = date.splitlines()[-1]
-
-        # git-2.2.0 added "%cI", which expands to an ISO-8601 -compliant
-        # datestamp. However we prefer "%ci" (which expands to an "ISO-8601
-        # -like" string, which we must then edit to make compliant), because
-        # it's been around since git-1.5.3, and it's too difficult to
-        # discover which version we're using, or to work around using an
-        # older one.
-        date = date.strip().replace(" ", "T", 1).replace(" ", "", 1)
-    refnames = keywords["refnames"].strip()
-    if refnames.startswith("$Format"):
-        if verbose:
-            print("keywords are unexpanded, not using")
-        raise NotThisMethod("unexpanded keywords, not a git-archive tarball")
-    refs = {r.strip() for r in refnames.strip("()").split(",")}
-    # starting in git-1.8.3, tags are listed as "tag: foo-1.0" instead of
-    # just "foo-1.0". If we see a "tag: " prefix, prefer those.
-    TAG = "tag: "
-    tags = {r[len(TAG):] for r in refs if r.startswith(TAG)}
-    if not tags:
-        # Either we're using git < 1.8.3, or there really are no tags. We use
-        # a heuristic: assume all version tags have a digit. The old git %d
-        # expansion behaves like git log --decorate=short and strips out the
-        # refs/heads/ and refs/tags/ prefixes that would let us distinguish
-        # between branches and tags. By ignoring refnames without digits, we
-        # filter out many common branch names like "release" and
-        # "stabilization", as well as "HEAD" and "master".
-        tags = {r for r in refs if re.search(r'\d', r)}
-        if verbose:
-            print("discarding '%s', no digits" % ",".join(refs - tags))
-    if verbose:
-        print("likely tags: %s" % ",".join(sorted(tags)))
-    for ref in sorted(tags):
-        # sorting will prefer e.g. "2.0" over "2.0rc1"
-        if ref.startswith(tag_prefix):
-            r = ref[len(tag_prefix):]
-            # Filter out refs that exactly match prefix or that don't start
-            # with a number once the prefix is stripped (mostly a concern
-            # when prefix is '')
-            if not re.match(r'\d', r):
-                continue
-            if verbose:
-                print("picking %s" % r)
-            return {"version": r,
-                    "full-revisionid": keywords["full"].strip(),
-                    "dirty": False, "error": None,
-                    "date": date}
-    # no suitable tags, so version is "0+unknown", but full hex is still there
-    if verbose:
-        print("no suitable tags, using unknown + full revision id")
-    return {"version": "0+unknown",
-            "full-revisionid": keywords["full"].strip(),
-            "dirty": False, "error": "no suitable tags", "date": None}
-
-
-@register_vcs_handler("git", "pieces_from_vcs")
-def git_pieces_from_vcs(
-    tag_prefix: str,
-    root: str,
-    verbose: bool,
-    runner: Callable = run_command
-) -> Dict[str, Any]:
-    """Get version from 'git describe' in the root of the source tree.
-
-    This only gets called if the git-archive 'subst' keywords were *not*
-    expanded, and _version.py hasn't already been rewritten with a short
-    version string, meaning we're inside a checked out source tree.
-    """
-    GITS = ["git"]
-    if sys.platform == "win32":
-        GITS = ["git.cmd", "git.exe"]
-
-    # GIT_DIR can interfere with correct operation of Versioneer.
-    # It may be intended to be passed to the Versioneer-versioned project,
-    # but that should not change where we get our version from.
-    env = os.environ.copy()
-    env.pop("GIT_DIR", None)
-    runner = functools.partial(runner, env=env)
-
-    _, rc = runner(GITS, ["rev-parse", "--git-dir"], cwd=root,
-                   hide_stderr=not verbose)
-    if rc != 0:
-        if verbose:
-            print("Directory %s not under git control" % root)
-        raise NotThisMethod("'git rev-parse --git-dir' returned error")
-
-    # if there is a tag matching tag_prefix, this yields TAG-NUM-gHEX[-dirty]
-    # if there isn't one, this yields HEX[-dirty] (no NUM)
-    describe_out, rc = runner(GITS, [
-        "describe", "--tags", "--dirty", "--always", "--long",
-        "--match", f"{tag_prefix}[[:digit:]]*"
-    ], cwd=root)
-    # --long was added in git-1.5.5
-    if describe_out is None:
-        raise NotThisMethod("'git describe' failed")
-    describe_out = describe_out.strip()
-    full_out, rc = runner(GITS, ["rev-parse", "HEAD"], cwd=root)
-    if full_out is None:
-        raise NotThisMethod("'git rev-parse' failed")
-    full_out = full_out.strip()
-
-    pieces: Dict[str, Any] = {}
-    pieces["long"] = full_out
-    pieces["short"] = full_out[:7]  # maybe improved later
-    pieces["error"] = None
-
-    branch_name, rc = runner(GITS, ["rev-parse", "--abbrev-ref", "HEAD"],
-                             cwd=root)
-    # --abbrev-ref was added in git-1.6.3
-    if rc != 0 or branch_name is None:
-        raise NotThisMethod("'git rev-parse --abbrev-ref' returned error")
-    branch_name = branch_name.strip()
-
-    if branch_name == "HEAD":
-        # If we aren't exactly on a branch, pick a branch which represents
-        # the current commit. If all else fails, we are on a branchless
-        # commit.
-        branches, rc = runner(GITS, ["branch", "--contains"], cwd=root)
-        # --contains was added in git-1.5.4
-        if rc != 0 or branches is None:
-            raise NotThisMethod("'git branch --contains' returned error")
-        branches = branches.split("\n")
-
-        # Remove the first line if we're running detached
-        if "(" in branches[0]:
-            branches.pop(0)
-
-        # Strip off the leading "* " from the list of branches.
-        branches = [branch[2:] for branch in branches]
-        if "master" in branches:
-            branch_name = "master"
-        elif not branches:
-            branch_name = None
-        else:
-            # Pick the first branch that is returned. Good or bad.
-            branch_name = branches[0]
-
-    pieces["branch"] = branch_name
-
-    # parse describe_out. It will be like TAG-NUM-gHEX[-dirty] or HEX[-dirty]
-    # TAG might have hyphens.
-    git_describe = describe_out
-
-    # look for -dirty suffix
-    dirty = git_describe.endswith("-dirty")
-    pieces["dirty"] = dirty
-    if dirty:
-        git_describe = git_describe[:git_describe.rindex("-dirty")]
-
-    # now we have TAG-NUM-gHEX or HEX
-
-    if "-" in git_describe:
-        # TAG-NUM-gHEX
-        mo = re.search(r'^(.+)-(\d+)-g([0-9a-f]+)$', git_describe)
-        if not mo:
-            # unparsable. Maybe git-describe is misbehaving?
-            pieces["error"] = ("unable to parse git-describe output: '%s'"
-                               % describe_out)
-            return pieces
-
-        # tag
-        full_tag = mo.group(1)
-        if not full_tag.startswith(tag_prefix):
-            if verbose:
-                fmt = "tag '%s' doesn't start with prefix '%s'"
-                print(fmt % (full_tag, tag_prefix))
-            pieces["error"] = ("tag '%s' doesn't start with prefix '%s'"
-                               % (full_tag, tag_prefix))
-            return pieces
-        pieces["closest-tag"] = full_tag[len(tag_prefix):]
-
-        # distance: number of commits since tag
-        pieces["distance"] = int(mo.group(2))
-
-        # commit: short hex revision ID
-        pieces["short"] = mo.group(3)
-
-    else:
-        # HEX: no tags
-        pieces["closest-tag"] = None
-        out, rc = runner(GITS, ["rev-list", "HEAD", "--left-right"], cwd=root)
-        pieces["distance"] = len(out.split())  # total number of commits
-
-    # commit date: see ISO-8601 comment in git_versions_from_keywords()
-    date = runner(GITS, ["show", "-s", "--format=%ci", "HEAD"], cwd=root)[0].strip()
-    # Use only the last line.  Previous lines may contain GPG signature
-    # information.
-    date = date.splitlines()[-1]
-    pieces["date"] = date.strip().replace(" ", "T", 1).replace(" ", "", 1)
-
-    return pieces
-
-
-def plus_or_dot(pieces: Dict[str, Any]) -> str:
-    """Return a + if we don't already have one, else return a ."""
-    if "+" in pieces.get("closest-tag", ""):
-        return "."
-    return "+"
-
-
-def render_pep440(pieces: Dict[str, Any]) -> str:
-    """Build up version string, with post-release "local version identifier".
-
-    Our goal: TAG[+DISTANCE.gHEX[.dirty]] . Note that if you
-    get a tagged build and then dirty it, you'll get TAG+0.gHEX.dirty
-
-    Exceptions:
-    1: no tags. git_describe was just HEX. 0+untagged.DISTANCE.gHEX[.dirty]
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"] or pieces["dirty"]:
-            rendered += plus_or_dot(pieces)
-            rendered += "%d.g%s" % (pieces["distance"], pieces["short"])
-            if pieces["dirty"]:
-                rendered += ".dirty"
-    else:
-        # exception #1
-        rendered = "0+untagged.%d.g%s" % (pieces["distance"],
-                                          pieces["short"])
-        if pieces["dirty"]:
-            rendered += ".dirty"
-    return rendered
-
-
-def render_pep440_branch(pieces: Dict[str, Any]) -> str:
-    """TAG[[.dev0]+DISTANCE.gHEX[.dirty]] .
-
-    The ".dev0" means not master branch. Note that .dev0 sorts backwards
-    (a feature branch will appear "older" than the master branch).
-
-    Exceptions:
-    1: no tags. 0[.dev0]+untagged.DISTANCE.gHEX[.dirty]
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"] or pieces["dirty"]:
-            if pieces["branch"] != "master":
-                rendered += ".dev0"
-            rendered += plus_or_dot(pieces)
-            rendered += "%d.g%s" % (pieces["distance"], pieces["short"])
-            if pieces["dirty"]:
-                rendered += ".dirty"
-    else:
-        # exception #1
-        rendered = "0"
-        if pieces["branch"] != "master":
-            rendered += ".dev0"
-        rendered += "+untagged.%d.g%s" % (pieces["distance"],
-                                          pieces["short"])
-        if pieces["dirty"]:
-            rendered += ".dirty"
-    return rendered
-
-
-def pep440_split_post(ver: str) -> Tuple[str, Optional[int]]:
-    """Split pep440 version string at the post-release segment.
-
-    Returns the release segments before the post-release and the
-    post-release version number (or -1 if no post-release segment is present).
-    """
-    vc = str.split(ver, ".post")
-    return vc[0], int(vc[1] or 0) if len(vc) == 2 else None
-
-
-def render_pep440_pre(pieces: Dict[str, Any]) -> str:
-    """TAG[.postN.devDISTANCE] -- No -dirty.
-
-    Exceptions:
-    1: no tags. 0.post0.devDISTANCE
-    """
-    if pieces["closest-tag"]:
-        if pieces["distance"]:
-            # update the post release segment
-            tag_version, post_version = pep440_split_post(pieces["closest-tag"])
-            rendered = tag_version
-            if post_version is not None:
-                rendered += ".post%d.dev%d" % (post_version + 1, pieces["distance"])
-            else:
-                rendered += ".post0.dev%d" % (pieces["distance"])
-        else:
-            # no commits, use the tag as the version
-            rendered = pieces["closest-tag"]
-    else:
-        # exception #1
-        rendered = "0.post0.dev%d" % pieces["distance"]
-    return rendered
-
-
-def render_pep440_post(pieces: Dict[str, Any]) -> str:
-    """TAG[.postDISTANCE[.dev0]+gHEX] .
-
-    The ".dev0" means dirty. Note that .dev0 sorts backwards
-    (a dirty tree will appear "older" than the corresponding clean one),
-    but you shouldn't be releasing software with -dirty anyways.
-
-    Exceptions:
-    1: no tags. 0.postDISTANCE[.dev0]
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"] or pieces["dirty"]:
-            rendered += ".post%d" % pieces["distance"]
-            if pieces["dirty"]:
-                rendered += ".dev0"
-            rendered += plus_or_dot(pieces)
-            rendered += "g%s" % pieces["short"]
-    else:
-        # exception #1
-        rendered = "0.post%d" % pieces["distance"]
-        if pieces["dirty"]:
-            rendered += ".dev0"
-        rendered += "+g%s" % pieces["short"]
-    return rendered
-
-
-def render_pep440_post_branch(pieces: Dict[str, Any]) -> str:
-    """TAG[.postDISTANCE[.dev0]+gHEX[.dirty]] .
-
-    The ".dev0" means not master branch.
-
-    Exceptions:
-    1: no tags. 0.postDISTANCE[.dev0]+gHEX[.dirty]
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"] or pieces["dirty"]:
-            rendered += ".post%d" % pieces["distance"]
-            if pieces["branch"] != "master":
-                rendered += ".dev0"
-            rendered += plus_or_dot(pieces)
-            rendered += "g%s" % pieces["short"]
-            if pieces["dirty"]:
-                rendered += ".dirty"
-    else:
-        # exception #1
-        rendered = "0.post%d" % pieces["distance"]
-        if pieces["branch"] != "master":
-            rendered += ".dev0"
-        rendered += "+g%s" % pieces["short"]
-        if pieces["dirty"]:
-            rendered += ".dirty"
-    return rendered
-
-
-def render_pep440_old(pieces: Dict[str, Any]) -> str:
-    """TAG[.postDISTANCE[.dev0]] .
-
-    The ".dev0" means dirty.
-
-    Exceptions:
-    1: no tags. 0.postDISTANCE[.dev0]
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"] or pieces["dirty"]:
-            rendered += ".post%d" % pieces["distance"]
-            if pieces["dirty"]:
-                rendered += ".dev0"
-    else:
-        # exception #1
-        rendered = "0.post%d" % pieces["distance"]
-        if pieces["dirty"]:
-            rendered += ".dev0"
-    return rendered
-
-
-def render_git_describe(pieces: Dict[str, Any]) -> str:
-    """TAG[-DISTANCE-gHEX][-dirty].
-
-    Like 'git describe --tags --dirty --always'.
-
-    Exceptions:
-    1: no tags. HEX[-dirty]  (note: no 'g' prefix)
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        if pieces["distance"]:
-            rendered += "-%d-g%s" % (pieces["distance"], pieces["short"])
-    else:
-        # exception #1
-        rendered = pieces["short"]
-    if pieces["dirty"]:
-        rendered += "-dirty"
-    return rendered
-
-
-def render_git_describe_long(pieces: Dict[str, Any]) -> str:
-    """TAG-DISTANCE-gHEX[-dirty].
-
-    Like 'git describe --tags --dirty --always -long'.
-    The distance/hash is unconditional.
-
-    Exceptions:
-    1: no tags. HEX[-dirty]  (note: no 'g' prefix)
-    """
-    if pieces["closest-tag"]:
-        rendered = pieces["closest-tag"]
-        rendered += "-%d-g%s" % (pieces["distance"], pieces["short"])
-    else:
-        # exception #1
-        rendered = pieces["short"]
-    if pieces["dirty"]:
-        rendered += "-dirty"
-    return rendered
-
-
-def render(pieces: Dict[str, Any], style: str) -> Dict[str, Any]:
-    """Render the given version pieces into the requested style."""
-    if pieces["error"]:
-        return {"version": "unknown",
-                "full-revisionid": pieces.get("long"),
-                "dirty": None,
-                "error": pieces["error"],
-                "date": None}
-
-    if not style or style == "default":
-        style = "pep440"  # the default
-
-    if style == "pep440":
-        rendered = render_pep440(pieces)
-    elif style == "pep440-branch":
-        rendered = render_pep440_branch(pieces)
-    elif style == "pep440-pre":
-        rendered = render_pep440_pre(pieces)
-    elif style == "pep440-post":
-        rendered = render_pep440_post(pieces)
-    elif style == "pep440-post-branch":
-        rendered = render_pep440_post_branch(pieces)
-    elif style == "pep440-old":
-        rendered = render_pep440_old(pieces)
-    elif style == "git-describe":
-        rendered = render_git_describe(pieces)
-    elif style == "git-describe-long":
-        rendered = render_git_describe_long(pieces)
-    else:
-        raise ValueError("unknown style '%s'" % style)
-
-    return {"version": rendered, "full-revisionid": pieces["long"],
-            "dirty": pieces["dirty"], "error": None,
-            "date": pieces.get("date")}
-
-
-def get_versions() -> Dict[str, Any]:
-    """Get version information or return default if unable to do so."""
-    # I am in _version.py, which lives at ROOT/VERSIONFILE_SOURCE. If we have
-    # __file__, we can work backwards from there to the root. Some
-    # py2exe/bbfreeze/non-CPython implementations don't do __file__, in which
-    # case we can only use expanded keywords.
-
-    cfg = get_config()
-    verbose = cfg.verbose
-
-    try:
-        return git_versions_from_keywords(get_keywords(), cfg.tag_prefix,
-                                          verbose)
-    except NotThisMethod:
-        pass
-
-    try:
-        root = os.path.realpath(__file__)
-        # versionfile_source is the relative path from the top of the source
-        # tree (where the .git directory might live) to this file. Invert
-        # this to find the root from __file__.
-        for _ in cfg.versionfile_source.split('/'):
-            root = os.path.dirname(root)
-    except NameError:
-        return {"version": "0+unknown", "full-revisionid": None,
-                "dirty": None,
-                "error": "unable to find root of source tree",
-                "date": None}
-
-    try:
-        pieces = git_pieces_from_vcs(cfg.tag_prefix, root, verbose)
-        return render(pieces, cfg.style)
-    except NotThisMethod:
-        pass
-
-    try:
-        if cfg.parentdir_prefix:
-            return versions_from_parentdir(cfg.parentdir_prefix, root, verbose)
-    except NotThisMethod:
-        pass
-
-    return {"version": "0+unknown", "full-revisionid": None,
-            "dirty": None,
-            "error": "unable to compute version", "date": None}
+# This file was generated by 'versioneer.py' (0.29) from
+# revision-control system data, or from the parent directory name of an
+# unpacked source archive. Distribution tarballs contain a pre-generated copy
+# of this file.
+
+import json
+
+version_json = '''
+{
+ "date": "2025-05-06T11:02:28-0400",
+ "dirty": false,
+ "error": null,
+ "full-revisionid": "c5e5e2f38938a78c3439882e8ad596c483c6adcf",
+ "version": "3.0.4"
+}
+'''  # END VERSION_JSON
+
+
+def get_versions():
+    return json.loads(version_json)

rapidtide/io.py

@@ -1938,7 +1938,12 @@ def parsefilespec(filespec, debug=False):
     if debug:
         print(f"PARSEFILESPEC: input string >>>{filespec}<<<")
         print(f"PARSEFILESPEC: platform is {platform.system()}")
-    if filespec[1] == ":" and platform.system() == "Windows":
+
+    specialcase = False
+    if len(inputlist) > 1:
+        if filespec[1] == ":" and platform.system() == "Windows":
+            specialcase = True
+    if specialcase:
         thefilename = ":".join([inputlist[0], inputlist[1]])
         if len(inputlist) == 3:
             thecolspec = inputlist[2]

rapidtide/tests/test_fullrunrapidtide_v1.py

@@ -23,7 +23,6 @@ import matplotlib as mpl
 import rapidtide.qualitycheck as rapidtide_quality
 import rapidtide.workflows.rapidtide as rapidtide_workflow
 import rapidtide.workflows.rapidtide_parser as rapidtide_parser
-import rapidtide.workflows.retroregress as rapidtide_retroregress
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
@@ -57,7 +56,6 @@ def test_fullrunrapidtide_v1(debug=False, local=False, displayplots=False):
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
     rapidtide_quality.qualitycheck(os.path.join(testtemproot, "sub-RAPIDTIDETEST1"))
 
-
     # test fixval
     inputargs = [
         os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),

rapidtide/tests/test_getparsers.py

@@ -0,0 +1,140 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import numpy as np
+
+from rapidtide.workflows.adjustoffset import _get_parser as adjustoffset_getparser
+from rapidtide.workflows.aligntcs import _get_parser as aligntcs_getparser
+from rapidtide.workflows.applydlfilter import _get_parser as applydlfilter_getparser
+from rapidtide.workflows.atlasaverage import _get_parser as atlasaverage_getparser
+from rapidtide.workflows.atlastool import _get_parser as atlastool_getparser
+from rapidtide.workflows.calctexticc import _get_parser as calctexticc_getparser
+from rapidtide.workflows.ccorrica import _get_parser as ccorrica_getparser
+from rapidtide.workflows.delayvar import _get_parser as delayvar_getparser
+from rapidtide.workflows.diffrois import _get_parser as diffrois_getparser
+from rapidtide.workflows.endtidalproc import _get_parser as endtidalproc_getparser
+from rapidtide.workflows.fdica import _get_parser as fdica_getparser
+from rapidtide.workflows.filtnifti import _get_parser as filtnifti_getparser
+from rapidtide.workflows.filttc import _get_parser as filttc_getparser
+from rapidtide.workflows.fixtr import _get_parser as fixtr_getparser
+from rapidtide.workflows.gmscalc import _get_parser as gmscalc_getparser
+from rapidtide.workflows.happy_parser import _get_parser as happy_parser_getparser
+from rapidtide.workflows.happy2std import _get_parser as happy2std_getparser
+from rapidtide.workflows.histnifti import _get_parser as histnifti_getparser
+from rapidtide.workflows.histtc import _get_parser as histtc_getparser
+from rapidtide.workflows.linfitfilt import _get_parser as linfitfilt_getparser
+from rapidtide.workflows.localflow import _get_parser as localflow_getparser
+from rapidtide.workflows.mergequality import _get_parser as mergequality_getparser
+from rapidtide.workflows.niftidecomp import _get_parser_temporal as niftidecomp_getparser_temporal
+from rapidtide.workflows.niftidecomp import _get_parser_spatial as niftidecomp_getparser_spatial
+from rapidtide.workflows.niftistats import _get_parser as niftistats_getparser
+from rapidtide.workflows.pairproc import _get_parser as pairproc_getparser
+from rapidtide.workflows.pairwisemergenifti import _get_parser as pairwisemergenifti_getparser
+from rapidtide.workflows.physiofreq import _get_parser as physiofreq_getparser
+from rapidtide.workflows.pixelcomp import _get_parser as pixelcomp_getparser
+from rapidtide.workflows.plethquality import _get_parser as plethquality_getparser
+from rapidtide.workflows.polyfitim import _get_parser as polyfitim_getparser
+from rapidtide.workflows.proj2flow import _get_parser as proj2flow_getparser
+from rapidtide.workflows.rankimage import _get_parser as rankimage_getparser
+from rapidtide.workflows.rapidtide2std import _get_parser as rapidtide2std_getparser
+from rapidtide.workflows.resamplenifti import _get_parser as resamplenifti_getparser
+from rapidtide.workflows.resampletc import _get_parser as resampletc_getparser
+from rapidtide.workflows.retrolagtcs import _get_parser as retrolagtcs_getparser
+from rapidtide.workflows.retroregress import _get_parser as retroregress_getparser
+from rapidtide.workflows.roisummarize import _get_parser as roisummarize_getparser
+from rapidtide.workflows.runqualitycheck import _get_parser as runqualitycheck_getparser
+from rapidtide.workflows.showarbcorr import _get_parser as showarbcorr_getparser
+from rapidtide.workflows.showhist import _get_parser as showhist_getparser
+from rapidtide.workflows.showstxcorr import _get_parser as showstxcorr_getparser
+from rapidtide.workflows.showtc import _get_parser as showtc_getparser
+from rapidtide.workflows.showxcorrx import _get_parser as showxcorrx_getparser
+from rapidtide.workflows.showxy import _get_parser as showxy_getparser
+from rapidtide.workflows.simdata import _get_parser as simdata_getparser
+from rapidtide.workflows.spatialfit import _get_parser as spatialfit_getparser
+from rapidtide.workflows.spatialmi import _get_parser as spatialmi_getparser
+from rapidtide.workflows.spectrogram import _get_parser as spectrogram_getparser
+from rapidtide.workflows.synthASL import _get_parser as synthASL_getparser
+from rapidtide.workflows.tcfrom2col import _get_parser as tcfrom2col_getparser
+from rapidtide.workflows.tcfrom3col import _get_parser as tcfrom3col_getparser
+from rapidtide.workflows.variabilityizer import _get_parser as variabilityizer_getparser
+
+
+def test_parsers(debug=False):
+    parserlist = [ adjustoffset_getparser,
+        aligntcs_getparser,
+        applydlfilter_getparser,
+        atlasaverage_getparser,
+        atlastool_getparser,
+        calctexticc_getparser,
+        ccorrica_getparser,
+        delayvar_getparser,
+        diffrois_getparser,
+        endtidalproc_getparser,
+        fdica_getparser,
+        filtnifti_getparser,
+        filttc_getparser,
+        fixtr_getparser,
+        gmscalc_getparser,
+        happy_parser_getparser,
+        happy2std_getparser,
+        histnifti_getparser,
+        histtc_getparser,
+        linfitfilt_getparser,
+        localflow_getparser,
+        mergequality_getparser,
+        niftidecomp_getparser_temporal,
+        niftidecomp_getparser_spatial,
+        niftistats_getparser,
+        pairproc_getparser,
+        pairwisemergenifti_getparser,
+        physiofreq_getparser,
+        pixelcomp_getparser,
+        plethquality_getparser,
+        polyfitim_getparser,
+        proj2flow_getparser,
+        rankimage_getparser,
+        rapidtide2std_getparser,
+        resamplenifti_getparser,
+        resampletc_getparser,
+        retrolagtcs_getparser,
+        retroregress_getparser,
+        roisummarize_getparser,
+        runqualitycheck_getparser,
+        showarbcorr_getparser,
+        showhist_getparser,
+        showstxcorr_getparser,
+        showtc_getparser,
+        showxcorrx_getparser,
+        showxy_getparser,
+        simdata_getparser,
+        spatialfit_getparser,
+        spatialmi_getparser,
+        spectrogram_getparser,
+        synthASL_getparser,
+        tcfrom2col_getparser,
+        tcfrom3col_getparser,
+        variabilityizer_getparser ]
+
+    for thegetparser in parserlist:
+        theusage = thegetparser().format_help()
+        if debug:
+            print(theusage)
+
+
+if __name__ == "__main__":
+    test_parsers(debug=True)

rapidtide/tests/test_parserfuncs.py

@@ -0,0 +1,70 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import os
+import argparse
+import rapidtide.workflows.parser_funcs as pf
+from rapidtide.tests.utils import get_examples_path, get_test_temp_path
+
+def _get_parser():
+    """
+    Argument parser for adjust offset
+    """
+    parser = argparse.ArgumentParser(
+        prog="dummy",
+        description="dummy",
+        allow_abbrev=False,
+    )
+
+    # Required arguments
+    parser.add_argument(
+        "inputmap",
+        type=lambda x: pf.is_valid_file(parser, x),
+        help="The name of the rapidtide maxtime map.",
+    )
+
+    return parser
+
+
+def test_parserfuncs(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
+
+    theparser = _get_parser()
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+    #filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseriesxyz.json")
+    #retval = pf.is_valid_file(theparser, filename)
+    #print(filename, retval)
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json:acolname")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+
+if __name__ == "__main__":
+    test_parserfuncs(debug=True, local=True, displayplots=True)

rapidtide/tests/test_zRapidtideDataset.py

@@ -59,7 +59,9 @@ def main(runninglocally=False):
         verbose=verbose,
     )
 
+    print("getting overlays")
     theoverlays = thesubject.getoverlays()
+    print("getting regressors")
     theregressors = thesubject.getregressors()
 
     assert thesubject.focusregressor == "prefilt"

rapidtide/workflows/rapidtide.py

@@ -3463,7 +3463,7 @@ def rapidtide_main(argparsingfunc):
             cifti_hdr=theinputdata.cifti_hdr,
         )
 
-        if optiondict["refinedelay"] and False:
+        if optiondict["refinedelay"]:
             # filter the fmri data to the lfo band
             print("filtering fmri_data to sLFO band")
             for i in range(fmri_data_valid.shape[0]):
@@ -3504,7 +3504,13 @@ def rapidtide_main(argparsingfunc):
             )
 
             maplist = [
-                (rvalue, "maxcorralt", "map", None, "R value of the inband sLFO fit, with sign"),
+                (
+                    rvalue,
+                    "maxcorrrefined",
+                    "map",
+                    None,
+                    "R value of the inband sLFO fit, with sign",
+                ),
             ]
 
             tide_io.savemaplist(

rapidtide/workflows/rapidtide2std.py

@@ -187,8 +187,10 @@ def rapidtide2std(args):
 
     thefmrimaps = [
         "desc-maxtime_map",
+        "desc-maxtimerefined_map",
         "desc-timepercentile_map",
         "desc-maxcorr_map",
+        "desc-maxcorrrefined_map",
         "desc-maxwidth_map",
         "desc-MTT_map",
         "desc-corrfit_mask",

rapidtide/workflows/retroregress.py

@@ -20,6 +20,7 @@ import argparse
 import copy
 import logging
 import os
+import platform
 import sys
 import time
 from pathlib import Path
@@ -163,13 +164,13 @@ def _get_parser():
         default=True,
     )
     parser.add_argument(
-        "--refinecorr",
+        "--norefinecorr",
         dest="refinecorr",
-        action="store_true",
+        action="store_false",
         help=(
-            "Recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
+            "Don't recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
         ),
-        default=False,
+        default=True,
     )
     parser.add_argument(
         "--nofilterwithrefineddelay",
@@ -819,6 +820,10 @@ def retroregress(args):
         ]
         anatomicmasks = []
         for thisanatomic in anatomiclist:
+            try:
+                thename = therunoptions[thisanatomic[0]]
+            except KeyError:
+                therunoptions[thisanatomic[0]] = None
             if therunoptions[thisanatomic[0]] is not None:
                 anatomicmasks.append(
                     tide_mask.readamask(
@@ -1237,13 +1242,13 @@ def retroregress(args):
         TimingLGR.info("Finishing output save")
 
         if args.refinecorr:
-            TimingLGR.info("Filtering for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation start")
             for thevoxel in range(fmri_data_valid.shape[0]):
                 fmri_data_valid[thevoxel, :] = theprefilter.apply(
                     1.0 / fmritr, fmri_data_valid[thevoxel, :]
                 )
-            TimingLGR.info("Filtering for maxcorralt calculation complete")
-            TimingLGR.info("GLM for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation complete")
+            TimingLGR.info("GLM for maxcorrrefined calculation start")
             voxelsprocessed_regressionfilt, regressorset, evset = (
                 tide_regressfrommaps.regressfrommaps(
                     fmri_data_valid,
@@ -1275,7 +1280,7 @@ def retroregress(args):
                 )
             )
             TimingLGR.info(
-                "GLM for maxcorralt calculation done",
+                "GLM for maxcorrrefined calculation done",
                 {
                     "message2": voxelsprocessed_regressionfilt,
                     "message3": "voxels",
@@ -1285,7 +1290,7 @@ def retroregress(args):
             maplist = [
                 (
                     rvalue,
-                    "maxcorralt",
+                    "maxcorrrefined",
                     "map",
                     None,
                     "R value for the lfo component of the delayed regressor, with sign",
@@ -1385,6 +1390,14 @@ def retroregress(args):
     therunoptions["retroregress_runtime"] = time.strftime(
         "%a, %d %b %Y %H:%M:%S %Z", time.localtime(time.time())
     )
+    (
+        therunoptions["retroregress_release_version"],
+        therunoptions["retroregress_git_sha"],
+        therunoptions["retroregress_git_date"],
+        therunoptions["retroregress_git_isdirty"],
+    ) = tide_util.version()
+    therunoptions["retroregress_python_version"] = str(sys.version_info)
+    therunoptions["retroregress_nodename"] = platform.node()
 
     # clean up shared memory
     if usesharedmem:

rapidtide/workflows/tidepool.py

@@ -1982,6 +1982,12 @@ def tidepool(args):
             "display": True,
             "funcmask": "p_lt_0p050_mask",
         },
+        "lagstrengthsrefined": {
+            "colormap": gen_thermal_state(),
+            "label": "Refined similarity coefficient",
+            "display": True,
+            "funcmask": "p_lt_0p050_mask",
+        },
         "lagsigma": {
             "colormap": gen_plasma_state(),
             "label": "Similarity width",

{rapidtide-3.0.3.dist-info → rapidtide-3.0.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.3
+Version: 3.0.4
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.3.dist-info → rapidtide-3.0.4.dist-info}/RECORD

@@ -9,10 +9,10 @@ cloud/simple-cp-test,sha256=5ef8wmLfcKdny59BV6_DnAPj7O_mi0rOHdFZVN2iiLA,421
 rapidtide/Colortables.py,sha256=OVtgnQ9xTJPgfdyK1ktESHRjBh09cxLVPZvgUvV5jOo,5814
 rapidtide/DerivativeDelay.py,sha256=B3ElHcaAvxH3qB0n6l4rIX5FXsRHp_PE_H3ky-5XdoQ,7107
 rapidtide/OrthoImageItem.py,sha256=w70QNZUelMI7wTWYaqOfkJEb38PdsxgSf0NLdyjlcNs,21669
-rapidtide/RapidtideDataset.py,sha256=BdchNX8aqcPW8dmjJQPNnmAYX0wFMMIJCLdVG3EokT4,52241
+rapidtide/RapidtideDataset.py,sha256=sccBQf8T9zvOMSHHXG7pwEm-sUyzbyZ4i0rFuWMwj3A,52343
 rapidtide/RegressorRefiner.py,sha256=dPG9Vy2nlqxv2Mx9vrYtgYTsNGcVIwWknawDrNdpZxQ,17232
 rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
-rapidtide/_version.py,sha256=w4vUyi4REvA9LeJul_uv8AcuFACKR4WIGQRoh2xocL8,24506
+rapidtide/_version.py,sha256=0MHhgNI7KG1HtW-Vg40MoyavbE1Adm-tJtYun_DiOpY,497
 rapidtide/calcandfitcorrpairs.py,sha256=dlKxjKSlgCF9AF_dRoPeIGc9dz1DIluYfKLQzTSQsd0,7397
 rapidtide/calccoherence.py,sha256=VayovUVA5X-eWmjJG0GNxI_Giw7vRjTDFvWcV6NVfq0,4512
 rapidtide/calcnullsimfunc.py,sha256=92q7Yw8VeSjA9UfcD-hHN9MgoaUcoKuR9VGBmt_n45M,7150
@@ -25,7 +25,7 @@ rapidtide/filter.py,sha256=GySR0UdlrfNzWs9HOdvsIGlfHKThT9KdamNk0Y0JHeU,71647
 rapidtide/fit.py,sha256=whveHKtqC-cPWxclCf86-5iBAtXOdXL2G1yg082q6R8,67955
 rapidtide/happy_supportfuncs.py,sha256=NlcZdD7wXQ65xYaB_t035PeSBC-FxbTy6x4B272q5x0,41968
 rapidtide/helper_classes.py,sha256=2m2zcFUgE12JhYL0HQJEafJ1pFa0Zsb46Lpi9iw3Qbg,51470
-rapidtide/io.py,sha256=nHhCJCiL_XgB5DY75_64cx6dYq1muohfrTZUlh5fVD8,74812
+rapidtide/io.py,sha256=mhfQpH4lD8lFIkbPRXuG7p2h9IFRWWENWcY-x9mdfIA,74919
 rapidtide/linfitfiltpass.py,sha256=fR8vQQrH8yfXyaMNNsELA7xCv_Ro7qpZSXX_PbIFtx0,16142
 rapidtide/makelaggedtcs.py,sha256=XC0-tTKfcV4qQeoOlF3PiAdbvMuDZetrifsmWc0wQTw,3998
 rapidtide/maskutil.py,sha256=IBEgxmHvQ2fnBoTeFu7vw_w3uf91NxpW3IgTDirhWH0,10890
@@ -235,13 +235,14 @@ rapidtide/tests/test_fullrunhappy_v2.py,sha256=KvibzQKw3HceMAltX19ZzgxtJ5w4LdKci
 rapidtide/tests/test_fullrunhappy_v3.py,sha256=Oy2UoFy4Tiye0fNuSsh9bF4PlclGHc6oGlKCoAdCOXc,1950
 rapidtide/tests/test_fullrunhappy_v4.py,sha256=n3LylIDexTly06sk5TUnrQhfizkf98Mo4VEaw3uNkr4,1960
 rapidtide/tests/test_fullrunhappy_v5.py,sha256=BK240KjaJs9mHFgTmsDjCW3miBd4dDTn6qZxAYD3HTA,1896
-rapidtide/tests/test_fullrunrapidtide_v1.py,sha256=42alaL-si5kPrtE-9QZ-zgCV__YsHxjqVoxidn65qdA,3162
+rapidtide/tests/test_fullrunrapidtide_v1.py,sha256=XhMjNG0EIyzGnGaI6Q_imSkjFDyScx1y-bwAWBlzC2w,3095
 rapidtide/tests/test_fullrunrapidtide_v2.py,sha256=KOuKoY5-Ryry7rlpIp-OzmCW2rYqGMIDa6JYqt57Tjk,3138
 rapidtide/tests/test_fullrunrapidtide_v3.py,sha256=i9RZCJ7ZieYnH0eIC38FuyN_uV9stDwuPuUoSVKJzXo,2889
 rapidtide/tests/test_fullrunrapidtide_v4.py,sha256=DTEom1FPHn21WZZveiCCf4L_NabR9BMzLNoAA8RuDv0,2118
 rapidtide/tests/test_fullrunrapidtide_v5.py,sha256=NzTYGXaWsJzd7uIIgom_NPwl3EmGCRxlylaUEVN3gxU,1779
 rapidtide/tests/test_fullrunrapidtide_v6.py,sha256=qjxniiLjkA8sFK3_spNpF13PsN_6ONTB8VtcSYAZ_a0,4368
 rapidtide/tests/test_fullrunrapidtide_v7.py,sha256=MKZ1Xi2pl04eb-cdxe6BeWkKqFWFTXAPZu3L_s7QNJk,4250
+rapidtide/tests/test_getparsers.py,sha256=kSloiKUsoWSQnaHdCKYPUPmXX31KlmRXtUQyveW7Sxk,6830
 rapidtide/tests/test_io.py,sha256=bNl-Aa8JfBkghA8OmVKPcjO-YGGQmXEp-1d29peWszc,17093
 rapidtide/tests/test_linfitfiltpass.py,sha256=Q_XbDujj4tGc3X_I37IJJBDsvAs0m-S_oU8WG7DcGKU,5554
 rapidtide/tests/test_mi.py,sha256=Yia_TE1VxQfT0cZFdwsw6pb2l5E3PmY89zhKSfKus3g,2272
@@ -249,6 +250,7 @@ rapidtide/tests/test_miscmath.py,sha256=Kng7InnANKQeWPlY0ZwdIQnYT79U6sNH1w63pCx1
 rapidtide/tests/test_motionregress.py,sha256=HS8Ph4-5owWp8oK6bwdy1FelJxDA0FE045JUnitth-4,5588
 rapidtide/tests/test_nullcorr.py,sha256=cs39wIW8anDQMg13EtTQf_5kr7yT9SSSSve9_7QWm34,6446
 rapidtide/tests/test_padvec.py,sha256=41Pnm5zJkWeOXbM0dngS7mRkGwJ4es4O5aiEQ8YJ3rs,6728
+rapidtide/tests/test_parserfuncs.py,sha256=moebtQVwiQ_g0XMmaiAY-wnO9rcSEby6V66PBrM42NY,2203
 rapidtide/tests/test_phaseanalysis.py,sha256=6d9nuSsVLjHW1br2BXvJxVQMjFcbuUuYGNjt3t7-odk,2150
 rapidtide/tests/test_rapidtideparser.py,sha256=Dmf_48Kgw9UW2L5pr8bVT1j5rBx__veAdiaAmYpIYCQ,5555
 rapidtide/tests/test_refinedelay.py,sha256=PNDbnmyRvogCZGiq08MtCsPWWJtLB9zzLXk0fvjmYm8,8473
@@ -258,7 +260,7 @@ rapidtide/tests/test_simulate.py,sha256=9zLY3PxmLgXdQcDHX5B0INyhhB_KOjwpBZkIEDVc
 rapidtide/tests/test_stcorrelate.py,sha256=ExYA58MDvJt3qGZAbEHSg-aMKtIKAX_zTacxiA0mttE,2493
 rapidtide/tests/test_timeshift.py,sha256=J4aLZI0ZvnB-vJZEAqwrcsarGRfKkKSY7IToyuhlqcg,3045
 rapidtide/tests/test_valtoindex.py,sha256=z-_m8d4Zo5pMeH2-vOhFM62hD4M7zcNx8rMrFA78fTI,1179
-rapidtide/tests/test_zRapidtideDataset.py,sha256=omevoP3Al73Y59--XVP7kMY584B0c5ANxJcVtQ_5rg4,2168
+rapidtide/tests/test_zRapidtideDataset.py,sha256=kR0ILh_F7lmcBLaPYxLvjOyzUrUnwZF3iLyezLbgCsI,2230
 rapidtide/tests/usercustomize.py,sha256=iP8Vh35CixAbBD5He7gjQwmqYGItRGoNS_OD4sdDEe8,159
 rapidtide/tests/utils.py,sha256=qs3GlHZjfMXLgtdXfA-nIIoyWAKbpvTwxB_ZcyTvYnA,3254
 rapidtide/tests/testdata/100206_REST1_LR_cardfromfmri_25.0Hz.txt,sha256=w_ocCt0muJse-VZvqzPIBiveBo0Rp2sjoSP04Am0vgM,423304
@@ -321,14 +323,14 @@ rapidtide/workflows/plethquality.py,sha256=kTO74C5aSBmomzt59zs1VeiO_C5SPTxvyZZ0v
 rapidtide/workflows/polyfitim.py,sha256=bVKBrrFa0WjWZju4Lkrr8_9mFWALqCxkpCX28540GQA,10184
 rapidtide/workflows/proj2flow.py,sha256=SbkYTRZ_SViVfiM0QJjo20RrICtbsQpEd2i9o9XDgPU,7290
 rapidtide/workflows/rankimage.py,sha256=9opJb3OikO69wtN8zgF3XJxgoHy1-erzZiDKs8pDM6U,3482
-rapidtide/workflows/rapidtide.py,sha256=S91w9i1Gy_p9wBFxTzj-8dzcZDlsST1K0JcOYandVDk,153872
-rapidtide/workflows/rapidtide2std.py,sha256=8i1M5hKikYFA1JcrMYYqLRVgy0Mo7kwHUqImliO6c_0,10413
+rapidtide/workflows/rapidtide.py,sha256=KdSgXM6PFA7ZScSlW3oqV7iD7XNViqul1dSP8V_SWNw,153985
+rapidtide/workflows/rapidtide2std.py,sha256=coxEnRAof6NNpeXjjECPazx5Wotf4l1SJCnaVEvmHQY,10483
 rapidtide/workflows/rapidtide_parser.py,sha256=gJ9YPEi7dwkaw04jsfzqTI3W2GJDtaP8MSZhDqX4Cpk,78250
 rapidtide/workflows/regressfrommaps.py,sha256=2qkD6e3wJ7Wo4M3xsQBHGOlzoZkz6IJv8vT92kv5RZE,5355
 rapidtide/workflows/resamplenifti.py,sha256=GJE7f8bzMRY3QYiMYZOD8bDnga4ah97sp-ZL3yaaIFA,4717
 rapidtide/workflows/resampletc.py,sha256=B4YIKn3qpDaM9dIhYjGwPl-2LtaEhm9fnMBzfBgAUSs,3959
 rapidtide/workflows/retrolagtcs.py,sha256=ep1Ve1GS9NqqE6Pw9kxeWyw78sEg-M1IV-KuSnivd7Y,10847
-rapidtide/workflows/retroregress.py,sha256=7mCtv7A0YulQPQUIUc1ebE0DbT9pxiEDewK0guJUF1Q,52061
+rapidtide/workflows/retroregress.py,sha256=sd7L_ri8av1euINcpKLgokrPGQo7QKQDguf0OWL8xD0,52631
 rapidtide/workflows/roisummarize.py,sha256=gnGcWOXRgRm6USgilj9K9Q3Mt5oUNCaincvJj1_ayPs,6710
 rapidtide/workflows/runqualitycheck.py,sha256=JIA2olhDk66HHSbLvsFrZieQq56YCIpbWpFzz0_ShHM,2434
 rapidtide/workflows/showarbcorr.py,sha256=mJpF2wSaMNw_jPZv4ru4x9x-rIOTDAABYZw7ZYesjF8,13606
@@ -344,12 +346,12 @@ rapidtide/workflows/spectrogram.py,sha256=7_CzFgX9ppE_2C4GiSP235BRUoh3YspCR_57_5
 rapidtide/workflows/synthASL.py,sha256=v4zkfrXbb6Y06IsAhSm3ZmL4UTPYWaK3vPnP3bKr-co,4971
 rapidtide/workflows/tcfrom2col.py,sha256=o7IEQ-YqN_VDu-f_9lme4DtSn8EbYCK5TCwGBGGr0YY,1936
 rapidtide/workflows/tcfrom3col.py,sha256=kV3V-qZ7A7LkD96aHVXabvohA8udsflHXnzsQIwiKug,1938
-rapidtide/workflows/tidepool.py,sha256=v67ONVgAv_CguVLmcvVu7g6SzG3uPwvBp-JhrB7xWPk,86396
+rapidtide/workflows/tidepool.py,sha256=Cac0zhS2ZT6myY_H2A0dAIox8ZoFyf42iB3flSb0qbw,86612
 rapidtide/workflows/utils.py,sha256=urIN-042oUCRDusVUSjBelVN3Te2JP3svY3ckq-yBMU,5379
 rapidtide/workflows/variabilityizer.py,sha256=h7Hhrxn84MclRfbAvKIZJoNzlcKO-8d9lZ6y6YFStk8,3167
-rapidtide-3.0.3.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-rapidtide-3.0.3.dist-info/METADATA,sha256=xVmotT3otkMEGyBKu2FoqxtEgVbeoq_81f-f8YSbAck,15688
-rapidtide-3.0.3.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-rapidtide-3.0.3.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
-rapidtide-3.0.3.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
-rapidtide-3.0.3.dist-info/RECORD,,
+rapidtide-3.0.4.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+rapidtide-3.0.4.dist-info/METADATA,sha256=W5hEm79xTNzz1vj8p1TfVUWbbB_hcxshHUKx1Morpu4,15688
+rapidtide-3.0.4.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
+rapidtide-3.0.4.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
+rapidtide-3.0.4.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
+rapidtide-3.0.4.dist-info/RECORD,,