rapidtide 3.0.11__py3-none-any.whl → 3.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (139) hide show
  1. rapidtide/Colortables.py +492 -27
  2. rapidtide/OrthoImageItem.py +1049 -46
  3. rapidtide/RapidtideDataset.py +1533 -86
  4. rapidtide/_version.py +3 -3
  5. rapidtide/calccoherence.py +196 -29
  6. rapidtide/calcnullsimfunc.py +191 -40
  7. rapidtide/calcsimfunc.py +245 -42
  8. rapidtide/correlate.py +1210 -393
  9. rapidtide/data/examples/src/testLD +56 -0
  10. rapidtide/data/examples/src/testalign +1 -1
  11. rapidtide/data/examples/src/testdelayvar +0 -1
  12. rapidtide/data/examples/src/testfmri +19 -1
  13. rapidtide/data/examples/src/testglmfilt +5 -5
  14. rapidtide/data/examples/src/testhappy +25 -3
  15. rapidtide/data/examples/src/testppgproc +17 -0
  16. rapidtide/data/examples/src/testrolloff +11 -0
  17. rapidtide/data/models/model_cnn_pytorch/best_model.pth +0 -0
  18. rapidtide/data/models/model_cnn_pytorch/loss.png +0 -0
  19. rapidtide/data/models/model_cnn_pytorch/loss.txt +1 -0
  20. rapidtide/data/models/model_cnn_pytorch/model.pth +0 -0
  21. rapidtide/data/models/model_cnn_pytorch/model_meta.json +68 -0
  22. rapidtide/decorators.py +91 -0
  23. rapidtide/dlfilter.py +2225 -108
  24. rapidtide/dlfiltertorch.py +4843 -0
  25. rapidtide/externaltools.py +327 -12
  26. rapidtide/fMRIData_class.py +79 -40
  27. rapidtide/filter.py +1899 -810
  28. rapidtide/fit.py +2004 -574
  29. rapidtide/genericmultiproc.py +93 -18
  30. rapidtide/happy_supportfuncs.py +2044 -171
  31. rapidtide/helper_classes.py +584 -43
  32. rapidtide/io.py +2363 -370
  33. rapidtide/linfitfiltpass.py +341 -75
  34. rapidtide/makelaggedtcs.py +211 -20
  35. rapidtide/maskutil.py +423 -53
  36. rapidtide/miscmath.py +827 -121
  37. rapidtide/multiproc.py +210 -22
  38. rapidtide/patchmatch.py +234 -33
  39. rapidtide/peakeval.py +32 -30
  40. rapidtide/ppgproc.py +2203 -0
  41. rapidtide/qualitycheck.py +352 -39
  42. rapidtide/refinedelay.py +422 -57
  43. rapidtide/refineregressor.py +498 -184
  44. rapidtide/resample.py +671 -185
  45. rapidtide/scripts/applyppgproc.py +28 -0
  46. rapidtide/simFuncClasses.py +1052 -77
  47. rapidtide/simfuncfit.py +260 -46
  48. rapidtide/stats.py +540 -238
  49. rapidtide/tests/happycomp +9 -0
  50. rapidtide/tests/test_dlfiltertorch.py +627 -0
  51. rapidtide/tests/test_findmaxlag.py +24 -8
  52. rapidtide/tests/test_fullrunhappy_v1.py +0 -2
  53. rapidtide/tests/test_fullrunhappy_v2.py +0 -2
  54. rapidtide/tests/test_fullrunhappy_v3.py +1 -0
  55. rapidtide/tests/test_fullrunhappy_v4.py +2 -2
  56. rapidtide/tests/test_fullrunrapidtide_v7.py +1 -1
  57. rapidtide/tests/test_simroundtrip.py +8 -8
  58. rapidtide/tests/utils.py +9 -8
  59. rapidtide/tidepoolTemplate.py +142 -38
  60. rapidtide/tidepoolTemplate_alt.py +165 -44
  61. rapidtide/tidepoolTemplate_big.py +189 -52
  62. rapidtide/util.py +1217 -118
  63. rapidtide/voxelData.py +684 -37
  64. rapidtide/wiener.py +19 -12
  65. rapidtide/wiener2.py +113 -7
  66. rapidtide/wiener_doc.py +255 -0
  67. rapidtide/workflows/adjustoffset.py +105 -3
  68. rapidtide/workflows/aligntcs.py +85 -2
  69. rapidtide/workflows/applydlfilter.py +87 -10
  70. rapidtide/workflows/applyppgproc.py +522 -0
  71. rapidtide/workflows/atlasaverage.py +210 -47
  72. rapidtide/workflows/atlastool.py +100 -3
  73. rapidtide/workflows/calcSimFuncMap.py +294 -64
  74. rapidtide/workflows/calctexticc.py +201 -9
  75. rapidtide/workflows/ccorrica.py +97 -4
  76. rapidtide/workflows/cleanregressor.py +168 -29
  77. rapidtide/workflows/delayvar.py +163 -10
  78. rapidtide/workflows/diffrois.py +81 -3
  79. rapidtide/workflows/endtidalproc.py +144 -4
  80. rapidtide/workflows/fdica.py +195 -15
  81. rapidtide/workflows/filtnifti.py +70 -3
  82. rapidtide/workflows/filttc.py +74 -3
  83. rapidtide/workflows/fitSimFuncMap.py +206 -48
  84. rapidtide/workflows/fixtr.py +73 -3
  85. rapidtide/workflows/gmscalc.py +113 -3
  86. rapidtide/workflows/happy.py +801 -199
  87. rapidtide/workflows/happy2std.py +144 -12
  88. rapidtide/workflows/happy_parser.py +138 -9
  89. rapidtide/workflows/histnifti.py +118 -2
  90. rapidtide/workflows/histtc.py +84 -3
  91. rapidtide/workflows/linfitfilt.py +117 -4
  92. rapidtide/workflows/localflow.py +328 -28
  93. rapidtide/workflows/mergequality.py +79 -3
  94. rapidtide/workflows/niftidecomp.py +322 -18
  95. rapidtide/workflows/niftistats.py +174 -4
  96. rapidtide/workflows/pairproc.py +88 -2
  97. rapidtide/workflows/pairwisemergenifti.py +85 -2
  98. rapidtide/workflows/parser_funcs.py +1421 -40
  99. rapidtide/workflows/physiofreq.py +137 -11
  100. rapidtide/workflows/pixelcomp.py +208 -5
  101. rapidtide/workflows/plethquality.py +103 -21
  102. rapidtide/workflows/polyfitim.py +151 -11
  103. rapidtide/workflows/proj2flow.py +75 -2
  104. rapidtide/workflows/rankimage.py +111 -4
  105. rapidtide/workflows/rapidtide.py +272 -15
  106. rapidtide/workflows/rapidtide2std.py +98 -2
  107. rapidtide/workflows/rapidtide_parser.py +109 -9
  108. rapidtide/workflows/refineDelayMap.py +143 -33
  109. rapidtide/workflows/refineRegressor.py +682 -93
  110. rapidtide/workflows/regressfrommaps.py +152 -31
  111. rapidtide/workflows/resamplenifti.py +85 -3
  112. rapidtide/workflows/resampletc.py +91 -3
  113. rapidtide/workflows/retrolagtcs.py +98 -6
  114. rapidtide/workflows/retroregress.py +165 -9
  115. rapidtide/workflows/roisummarize.py +173 -5
  116. rapidtide/workflows/runqualitycheck.py +71 -3
  117. rapidtide/workflows/showarbcorr.py +147 -4
  118. rapidtide/workflows/showhist.py +86 -2
  119. rapidtide/workflows/showstxcorr.py +160 -3
  120. rapidtide/workflows/showtc.py +159 -3
  121. rapidtide/workflows/showxcorrx.py +184 -4
  122. rapidtide/workflows/showxy.py +185 -15
  123. rapidtide/workflows/simdata.py +262 -36
  124. rapidtide/workflows/spatialfit.py +77 -2
  125. rapidtide/workflows/spatialmi.py +251 -27
  126. rapidtide/workflows/spectrogram.py +305 -32
  127. rapidtide/workflows/synthASL.py +154 -3
  128. rapidtide/workflows/tcfrom2col.py +76 -2
  129. rapidtide/workflows/tcfrom3col.py +74 -2
  130. rapidtide/workflows/tidepool.py +2969 -130
  131. rapidtide/workflows/utils.py +19 -14
  132. rapidtide/workflows/utils_doc.py +293 -0
  133. rapidtide/workflows/variabilityizer.py +116 -3
  134. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/METADATA +3 -2
  135. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/RECORD +139 -122
  136. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/entry_points.txt +1 -0
  137. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/WHEEL +0 -0
  138. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/licenses/LICENSE +0 -0
  139. {rapidtide-3.0.11.dist-info → rapidtide-3.1.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,28 @@
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+ #!/usr/bin/env python
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+ # -*- coding: utf-8 -*-
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+ #
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+ # Copyright 2016-2025 Blaise Frederick
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ #
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+ #
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+ import rapidtide.workflows.applyppgproc as theworkflow
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+ import rapidtide.workflows.parser_funcs as pf
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+
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+
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+ def entrypoint():
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+ pf.generic_init(theworkflow._get_parser, theworkflow.procppg)
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+
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+
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+ if __name__ == "__main__":
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+ entrypoint()