rapidtide 3.0.10__py3-none-any.whl → 3.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- rapidtide/Colortables.py +492 -27
- rapidtide/OrthoImageItem.py +1053 -47
- rapidtide/RapidtideDataset.py +1533 -86
- rapidtide/_version.py +3 -3
- rapidtide/calccoherence.py +196 -29
- rapidtide/calcnullsimfunc.py +191 -40
- rapidtide/calcsimfunc.py +245 -42
- rapidtide/correlate.py +1210 -393
- rapidtide/data/examples/src/testLD +56 -0
- rapidtide/data/examples/src/testalign +1 -1
- rapidtide/data/examples/src/testdelayvar +0 -1
- rapidtide/data/examples/src/testfmri +19 -1
- rapidtide/data/examples/src/testglmfilt +5 -5
- rapidtide/data/examples/src/testhappy +30 -1
- rapidtide/data/examples/src/testppgproc +17 -0
- rapidtide/data/examples/src/testrolloff +11 -0
- rapidtide/data/models/model_cnn_pytorch/best_model.pth +0 -0
- rapidtide/data/models/model_cnn_pytorch/loss.png +0 -0
- rapidtide/data/models/model_cnn_pytorch/loss.txt +1 -0
- rapidtide/data/models/model_cnn_pytorch/model.pth +0 -0
- rapidtide/data/models/model_cnn_pytorch/model_meta.json +68 -0
- rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm.nii.gz +0 -0
- rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin2009cAsym_2mm_mask.nii.gz +0 -0
- rapidtide/decorators.py +91 -0
- rapidtide/dlfilter.py +2225 -108
- rapidtide/dlfiltertorch.py +4843 -0
- rapidtide/externaltools.py +327 -12
- rapidtide/fMRIData_class.py +79 -40
- rapidtide/filter.py +1899 -810
- rapidtide/fit.py +2004 -574
- rapidtide/genericmultiproc.py +93 -18
- rapidtide/happy_supportfuncs.py +2044 -171
- rapidtide/helper_classes.py +584 -43
- rapidtide/io.py +2363 -370
- rapidtide/linfitfiltpass.py +341 -75
- rapidtide/makelaggedtcs.py +211 -20
- rapidtide/maskutil.py +423 -53
- rapidtide/miscmath.py +827 -121
- rapidtide/multiproc.py +210 -22
- rapidtide/patchmatch.py +234 -33
- rapidtide/peakeval.py +32 -30
- rapidtide/ppgproc.py +2203 -0
- rapidtide/qualitycheck.py +352 -39
- rapidtide/refinedelay.py +422 -57
- rapidtide/refineregressor.py +498 -184
- rapidtide/resample.py +671 -185
- rapidtide/scripts/applyppgproc.py +28 -0
- rapidtide/simFuncClasses.py +1052 -77
- rapidtide/simfuncfit.py +260 -46
- rapidtide/stats.py +540 -238
- rapidtide/tests/happycomp +9 -0
- rapidtide/tests/test_dlfiltertorch.py +627 -0
- rapidtide/tests/test_findmaxlag.py +24 -8
- rapidtide/tests/test_fullrunhappy_v1.py +0 -2
- rapidtide/tests/test_fullrunhappy_v2.py +0 -2
- rapidtide/tests/test_fullrunhappy_v3.py +1 -0
- rapidtide/tests/test_fullrunhappy_v4.py +2 -2
- rapidtide/tests/test_fullrunrapidtide_v7.py +1 -1
- rapidtide/tests/test_simroundtrip.py +8 -8
- rapidtide/tests/utils.py +9 -8
- rapidtide/tidepoolTemplate.py +142 -38
- rapidtide/tidepoolTemplate_alt.py +165 -44
- rapidtide/tidepoolTemplate_big.py +189 -52
- rapidtide/util.py +1217 -118
- rapidtide/voxelData.py +684 -37
- rapidtide/wiener.py +19 -12
- rapidtide/wiener2.py +113 -7
- rapidtide/wiener_doc.py +255 -0
- rapidtide/workflows/adjustoffset.py +105 -3
- rapidtide/workflows/aligntcs.py +85 -2
- rapidtide/workflows/applydlfilter.py +87 -10
- rapidtide/workflows/applyppgproc.py +522 -0
- rapidtide/workflows/atlasaverage.py +210 -47
- rapidtide/workflows/atlastool.py +100 -3
- rapidtide/workflows/calcSimFuncMap.py +294 -64
- rapidtide/workflows/calctexticc.py +201 -9
- rapidtide/workflows/ccorrica.py +97 -4
- rapidtide/workflows/cleanregressor.py +168 -29
- rapidtide/workflows/delayvar.py +163 -10
- rapidtide/workflows/diffrois.py +81 -3
- rapidtide/workflows/endtidalproc.py +144 -4
- rapidtide/workflows/fdica.py +195 -15
- rapidtide/workflows/filtnifti.py +70 -3
- rapidtide/workflows/filttc.py +74 -3
- rapidtide/workflows/fitSimFuncMap.py +206 -48
- rapidtide/workflows/fixtr.py +73 -3
- rapidtide/workflows/gmscalc.py +113 -3
- rapidtide/workflows/happy.py +813 -201
- rapidtide/workflows/happy2std.py +144 -12
- rapidtide/workflows/happy_parser.py +149 -8
- rapidtide/workflows/histnifti.py +118 -2
- rapidtide/workflows/histtc.py +84 -3
- rapidtide/workflows/linfitfilt.py +117 -4
- rapidtide/workflows/localflow.py +328 -28
- rapidtide/workflows/mergequality.py +79 -3
- rapidtide/workflows/niftidecomp.py +322 -18
- rapidtide/workflows/niftistats.py +174 -4
- rapidtide/workflows/pairproc.py +88 -2
- rapidtide/workflows/pairwisemergenifti.py +85 -2
- rapidtide/workflows/parser_funcs.py +1421 -40
- rapidtide/workflows/physiofreq.py +137 -11
- rapidtide/workflows/pixelcomp.py +208 -5
- rapidtide/workflows/plethquality.py +103 -21
- rapidtide/workflows/polyfitim.py +151 -11
- rapidtide/workflows/proj2flow.py +75 -2
- rapidtide/workflows/rankimage.py +111 -4
- rapidtide/workflows/rapidtide.py +272 -15
- rapidtide/workflows/rapidtide2std.py +98 -2
- rapidtide/workflows/rapidtide_parser.py +109 -9
- rapidtide/workflows/refineDelayMap.py +143 -33
- rapidtide/workflows/refineRegressor.py +682 -93
- rapidtide/workflows/regressfrommaps.py +152 -31
- rapidtide/workflows/resamplenifti.py +85 -3
- rapidtide/workflows/resampletc.py +91 -3
- rapidtide/workflows/retrolagtcs.py +98 -6
- rapidtide/workflows/retroregress.py +165 -9
- rapidtide/workflows/roisummarize.py +173 -5
- rapidtide/workflows/runqualitycheck.py +71 -3
- rapidtide/workflows/showarbcorr.py +147 -4
- rapidtide/workflows/showhist.py +86 -2
- rapidtide/workflows/showstxcorr.py +160 -3
- rapidtide/workflows/showtc.py +159 -3
- rapidtide/workflows/showxcorrx.py +184 -4
- rapidtide/workflows/showxy.py +185 -15
- rapidtide/workflows/simdata.py +262 -36
- rapidtide/workflows/spatialfit.py +77 -2
- rapidtide/workflows/spatialmi.py +251 -27
- rapidtide/workflows/spectrogram.py +305 -32
- rapidtide/workflows/synthASL.py +154 -3
- rapidtide/workflows/tcfrom2col.py +76 -2
- rapidtide/workflows/tcfrom3col.py +74 -2
- rapidtide/workflows/tidepool.py +2972 -133
- rapidtide/workflows/utils.py +19 -14
- rapidtide/workflows/utils_doc.py +293 -0
- rapidtide/workflows/variabilityizer.py +116 -3
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/METADATA +10 -9
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/RECORD +141 -122
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/entry_points.txt +1 -0
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/WHEEL +0 -0
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/licenses/LICENSE +0 -0
- {rapidtide-3.0.10.dist-info → rapidtide-3.1.dist-info}/top_level.txt +0 -0
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rapidtide/workflows/adjustoffset.py,sha256=vFcyTb6u-FpY2T900xBOnhhYWkZsTQl5qM9B4rwF288,12265
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rapidtide/workflows/applydlfilter.py,sha256=CndzGEQ9iQIwKRgKQ8Bkzb1xkq_5BT1JCTBTvp0j9U0,8484
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rapidtide/workflows/applyppgproc.py,sha256=jAB3u1sNqcvAmVI-UGqzsfdlSwSh_Njnh72rSZn-SUY,19256
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rapidtide/workflows/atlasaverage.py,sha256=tIKvw_DwWKcrtZETlcK2Y0mnyQMxlnyXSWXK-QXXqu8,23551
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313
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rapidtide/workflows/atlastool.py,sha256=vG5MxpLQnEzcYhAcw1fIiPGxNYiTajM1mDBRF27SLz4,19663
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rapidtide/workflows/calcSimFuncMap.py,sha256=P1JkZkiE7mqv2mWsTHRc6Fvoty4Wge1cDXO8XQk9G0o,17836
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rapidtide/workflows/calctexticc.py,sha256=Ot05uFtz6w2_q4cXitXhqwt_8tqZmElKLey6cIvGxAY,17470
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rapidtide/workflows/ccorrica.py,sha256=OsbK1wURJIC7yTNVcYEOp0PinYIYIlOYQGFr81uUZkg,14186
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rapidtide/workflows/cleanregressor.py,sha256=0aDhZdl22GVwfi_BSKHicmJqb66FJEO9-AUSm441V4s,15737
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rapidtide/workflows/delayvar.py,sha256=zFx0dTty7pmwNhFdz5oskVe3nsM9SumOb9Fbr4CIAIw,44703
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rapidtide/workflows/diffrois.py,sha256=zmMaqGu2Prk3RczkeIBw1B7mtP_EUeyAQC57k6sYMo8,8428
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rapidtide/workflows/endtidalproc.py,sha256=MLuLWa2eoyZGxWIyO-gZXnntw40eAP86qhHizfaqQPI,9555
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rapidtide/workflows/fdica.py,sha256=gZlLcAsRczTnKgDdnPMsb0U1aLvqPKVLC3G8l2macF0,21425
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rapidtide/workflows/filtnifti.py,sha256=GoLDFkBrOdbJN4ffqbTgVc4h5GLNbKXK9YuB-8zAr10,5854
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rapidtide/workflows/filttc.py,sha256=gPuhxcaz8vjjuDwr1ybJjhXxw4I4v-Jiu5KOoRvqJQg,7445
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rapidtide/workflows/fitSimFuncMap.py,sha256=bVdBqH5WSNDAeW5_Q8YWhNV12AtIApdW3lU46nZSGSc,22128
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rapidtide/workflows/fixtr.py,sha256=W-XViiHn2OOSy1MuSJxgbMsYyBsI6GykB9CxBFgfHSA,4406
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rapidtide/workflows/gmscalc.py,sha256=EXI9bWHvNjUKdB775uyoRsx6ByvVLMWTXfpdtRHKf-Y,10082
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rapidtide/workflows/happy.py,sha256=DFlf8tf73QFty8OGpJDa7nfVwEXkpvHVZW3QeTbzueo,93492
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rapidtide/workflows/happy2std.py,sha256=yuRodhqlzwQg4ew7xtlKoQaJbECbZa4vNssd8jUJlzw,13501
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rapidtide/workflows/happy_parser.py,sha256=eqopDgCDbqtFYBD5H6eSt8RSB4hgu_mz65OcayA8a3o,32363
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rapidtide/workflows/histnifti.py,sha256=8NIZG8j4AWBEbeotVg98FUVDq66dBIqmWhcvQ1vg3ns,15713
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rapidtide/workflows/histtc.py,sha256=zgLLKYyhuQSw4TfJhIjrmsEuFgF4cSFjig90HNTN-5o,7424
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rapidtide/workflows/linfitfilt.py,sha256=e8Dh-9tGrT-2fqfDd1jCzqAU8Q6BgBaIf6GULbxl01I,13892
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rapidtide/workflows/localflow.py,sha256=s11r9b_T_IKU3P2jce4ZOlRUuKIwvlPFucbzsp_uc4k,34401
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rapidtide/workflows/mergequality.py,sha256=FPItpGKlgXbLoyBBQZJ5G5HOd38wPGUQZa7X78_jz3s,18344
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rapidtide/workflows/niftidecomp.py,sha256=Dv3PqSEW5_2AEoMlQm-U4FkABKASSoT1OS6ExwzMBv8,26116
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rapidtide/workflows/niftistats.py,sha256=rhug32RyFd_PLc8_2TlnW6gvIvXC4i_gbvh7iqv2XF8,24351
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rapidtide/workflows/pairproc.py,sha256=-s9CjpE6XUkYt0NU6cDqLbbHUL-WqofqiwqTieRTxg8,9799
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rapidtide/workflows/pairwisemergenifti.py,sha256=JETsEp3mrIRSF3f68rKBB0a8gNprr3VHOn0isEXUh9w,6624
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rapidtide/workflows/parser_funcs.py,sha256=cICRhK6CKMtlxjF9PVfwm73JqBaL9VsewBiq9UTIeB0,75835
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rapidtide/workflows/physiofreq.py,sha256=U-eLNdtLQfUvpJopImw0g1NX5l8Vk51X1lV4ri5s_Fg,10090
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rapidtide/workflows/pixelcomp.py,sha256=VIWWkA9Pmq1jhj36trxB2GFxBJ9nEktTase-zG7cM44,13830
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rapidtide/workflows/plethquality.py,sha256=oWsCjidcidpdaVYHOY4JRpPgEikyrhtym_vg_Mnq-Is,7019
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rapidtide/workflows/polyfitim.py,sha256=eFyGvHXXXh7iZX3yis6uzl-LTO2IFIX9c0IC47nXkBc,15355
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rapidtide/workflows/proj2flow.py,sha256=ifp5Uc4pUijKggP2fr0prrE72i01r4OXBNMwTkRR0n4,10092
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rapidtide/workflows/rankimage.py,sha256=QGcXzgsT80xhPqcmB4STXfmJ5kUVWBsn0tfRTVgtm-U,7113
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rapidtide/workflows/rapidtide.py,sha256=XD3ChlxOVagXJCdzfjnz-Oe7sSz1ZOQ2RZUUSYt2c0I,142570
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rapidtide/workflows/rapidtide2std.py,sha256=Wo1wGeW-4z-Mwm1-5zTJGQc7Mwks6Y2byPhI250hKWU,14330
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rapidtide/workflows/rapidtide_parser.py,sha256=NWbGIaTT-vtl9aTtW_ceow9-8EaL1LL6CbF9NSXQtJk,81187
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rapidtide/workflows/refineDelayMap.py,sha256=Hdp_wcJbViDEUWuAhicDub-T-x6d2ekATMa8ZeCPp2s,7829
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rapidtide/workflows/refineRegressor.py,sha256=6Zq8KDbbeIY3011bf4wnzEkYnzfbPrxVzuEn-ATfms8,47416
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rapidtide/workflows/regressfrommaps.py,sha256=Pkdrg-BiHo8Hf3wIoiN-RYDdHtWh7Ct0jqsAoly4M10,10059
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rapidtide/workflows/resamplenifti.py,sha256=AEJsLzjKMs6Xmarb6eEIqvE3HHljvXVbmulVrZSoNzs,7613
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rapidtide/workflows/resampletc.py,sha256=UL3eAyfbvhQT63m9yQSGETxDX6OC33AlJNBUlI8M3oY,7199
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rapidtide/workflows/retrolagtcs.py,sha256=l0KPKkn3QlcJYgT0ozKTEzhKi9nPJ-5A9MhZTwIu0tQ,13992
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rapidtide/workflows/retroregress.py,sha256=z9ouEDlu7TfSQtBEXKxAPxrTcJL0MgxVpMlXX4QnJCY,53000
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rapidtide/workflows/roisummarize.py,sha256=9LzYaD094cVaOIFuLXUCKHOs8Z-5qJ6HQ9J3cdPljuU,13025
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rapidtide/workflows/runqualitycheck.py,sha256=-BGuDW8i3kRJI9xZUz5_4j5FXZ-k6I8tkzMM3jd5ZH8,4691
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rapidtide/workflows/showarbcorr.py,sha256=G1ukWbGp-y8_NFZk6YIMnNEaKlCfaWM4dviBtVTIJpA,19480
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rapidtide/workflows/showhist.py,sha256=DzoVTBBt0AwCkNuACOp5CvVOxMqc067twwAiN9yuTdg,6651
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rapidtide/workflows/showstxcorr.py,sha256=vkdDti91_UvscSTV6MCCLUFadlhx042xt9N3kXCrlkQ,23205
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rapidtide/workflows/showtc.py,sha256=qgfY03o7foUfdmldDmdpTTwBO-sZnuNcPwXwy4vYr2I,24573
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rapidtide/workflows/showxcorrx.py,sha256=wY5XVQ_tv1KvaIoQqsAaAKVhul5Zbud-ZqEA141nhKE,37614
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rapidtide/workflows/showxy.py,sha256=CH78ZrZZtcnptzVKlAxg_BatRWmbigyaNfz8l_RvArI,17005
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+
rapidtide/workflows/simdata.py,sha256=7GjQCrPc3Z-s-Q5W5nY-uqwK1BP0x_juIW6yapzeCqc,26612
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rapidtide/workflows/spatialfit.py,sha256=NHXz-KKqZep64kdkawZkaMJOI7mhF0HPrpCt9lLFLxY,11758
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+
rapidtide/workflows/spatialmi.py,sha256=qS131Dk3cDhHCyDze20itR07bCZb1tP_6q2usOUnkh0,22173
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+
rapidtide/workflows/spectrogram.py,sha256=ZY1PHpRISC3-O4epYa5u6BgJYBpdbxjz3BqgwZC2UuY,16005
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+
rapidtide/workflows/synthASL.py,sha256=68ecEH87SCHyO-x1y95FaaptrcpYAg0xd-1EFjePZuY,9968
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+
rapidtide/workflows/tcfrom2col.py,sha256=aK-EaFu1HP0NqK_SUd9N9O2-aBeJ0eiFZ44QJa2FZLM,4428
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+
rapidtide/workflows/tcfrom3col.py,sha256=mb1d7-B67Hht0EDASfJBbjNEETPSn26tHMpwY541emY,4405
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rapidtide/workflows/tidepool.py,sha256=U0NuvqBdpDcNDKOcWOS54TJlgRJQ_dnKrPq02QI4TeM,187917
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rapidtide/workflows/utils.py,sha256=ZHERuhotw_KB2Jxf8JtbKgpInbM20rX9uixTIldk7Tg,5612
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rapidtide/workflows/utils_doc.py,sha256=7WZ_E_4mnVO3iDynZ8Gd6FUBC9pz-Csz2TmNHT-72zA,10283
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rapidtide/workflows/variabilityizer.py,sha256=_AY16UY9_1cVjkUMFWPTufTQWLxhUFNpG1PAangvThw,7576
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rapidtide-3.1.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
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rapidtide-3.1.dist-info/METADATA,sha256=0Wn2UujZPrs3-CSFAXim0JWRljfMhBLbHJw_z-5YLcI,15717
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+
rapidtide-3.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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rapidtide-3.1.dist-info/entry_points.txt,sha256=dVXEEfqnv_eUNdn02PfZTTd5KK4vZwumP8HCfhUVhag,3380
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rapidtide-3.1.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
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rapidtide-3.1.dist-info/RECORD,,
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@@ -2,6 +2,7 @@
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2
2
|
adjustoffset = rapidtide.scripts.adjustoffset:entrypoint
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3
3
|
aligntcs = rapidtide.scripts.aligntcs:entrypoint
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4
4
|
applydlfilter = rapidtide.scripts.applydlfilter:entrypoint
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5
|
+
applyppgproc = rapidtide.scripts.applyppgproc:entrypoint
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5
6
|
atlasaverage = rapidtide.scripts.atlasaverage:entrypoint
|
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6
7
|
atlastool = rapidtide.scripts.atlastool:entrypoint
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7
8
|
calcicc = rapidtide.scripts.calcicc:entrypoint
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File without changes
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