radnn 0.0.6__py3-none-any.whl → 0.0.7__py3-none-any.whl

radnn/ml_system.py

@@ -0,0 +1,96 @@
+import os
+import random
+import numpy as np
+import importlib
+
+class MLSystem(object):
+  IS_USING_TENSORFLOW = False
+  IS_USING_TORCH = False
+
+  # --------------------------------------------------------------------------------------
+  _instance = None
+  @classmethod
+  def Instance(cls):
+    if cls._instance is None:
+      cls._instance = cls()
+      mlsys = cls._instance
+    return cls._instance
+  # --------------------------------------------------------------------------------------
+  @property
+  def is_tensorflow(self):
+      return self.is_tensorflow_installed and (not cls.IS_USING_TORCH) and (cls.IS_USING_TENSORFLOW)
+  # --------------------------------------------------------------------------------------
+  @property
+  def is_torch(self):
+      return self.is_torch_installed and (cls.IS_USING_TORCH)
+  # --------------------------------------------------------------------------------------
+  def __init__(self):
+    self._is_random_seed_initialized = False
+    self._filesys = None
+    self.switches = dict()
+    self.switches["IsDebuggable"] = False
+
+    self.is_tensorflow_installed = False
+    self.is_torch_installed = False
+    self.is_opencv_installed = False
+  # --------------------------------------------------------------------------------------
+  def use_tensorflow(self):
+    self.IS_USING_TENSORFLOW = True
+    self.IS_USING_TORCH = False
+  # --------------------------------------------------------------------------------------
+  def use_torch(self):
+    self.IS_USING_TORCH = True
+    self.IS_USING_TENSORFLOW = False
+  # --------------------------------------------------------------------------------------
+  @property
+  def filesys(self):
+    return self._filesys
+  # ............................
+  @filesys.setter
+  def filesys(self, value):
+    self._filesys = value
+  # --------------------------------------------------------------------------------------
+  # We are seeding the number generators to get some amount of determinism for the whole ML training process.
+  # For Tensorflow it is not ensuring 100% deterministic reproduction of an experiment on the GPU.
+  def random_seed_all(self, seed, is_done_once=False):
+    bContinue = True
+    if is_done_once:
+      bContinue = (not self._is_random_seed_initialized)
+
+    if bContinue:
+      random.seed(seed)
+      os.environ['PYTHONHASHSEED'] = str(seed)
+      np.random.seed(seed)
+      if mlsys.is_tensorflow:
+        import tensorflow as tf
+        tf.compat.v1.reset_default_graph()
+        tf.random.set_seed(seed)
+        tf.keras.utils.set_random_seed(seed)
+      elif mlsys.is_torch:
+        import torch
+        torch.manual_seed(seed)
+        # GPU and multi-GPU
+        torch.cuda.manual_seed(seed)
+        torch.cuda.manual_seed_all(seed)
+        # For GPU determinism
+        torch.backends.cudnn.deterministic = True
+        torch.backends.cudnn.benchmark = False
+
+      self._is_random_seed_initialized = True
+      print("(>) Random seed set to %d" % seed)
+  # --------------------------------------------------------------------------------------
+
+
+# ----------------------------------------------------------------------------------------------------------------------
+def is_tensorflow_installed():
+    bIsInstalled = importlib.util.find_spec("tensorflow") is not None
+    if not is_tensorflow_installed:
+      bIsInstalled = importlib.util.find_spec("tensorflow-gpu") is not None
+    return bIsInstalled
+# ----------------------------------------------------------------------------------------------------------------------
+
+
+mlsys: MLSystem = MLSystem.Instance()
+mlsys.is_tensorflow_installed = is_tensorflow_installed()
+mlsys.is_torch_installed = importlib.util.find_spec("torch") is not None
+mlsys.is_opencv_installed = importlib.util.find_spec("cv2") is not None

radnn/plots/__init__.py

@@ -2,4 +2,5 @@ from .plot_confusion_matrix import PlotConfusionMatrix
 from .plot_learning_curve import PlotLearningCurve
 from .plot_roc import PlotROC
 from .plot_voronoi_2d import PlotVoronoi2D
-from .plot_multi_scatter import MultiScatterPlot
+from .plot_multi_scatter import MultiScatterPlot
+from .plot_auto_multi_image import AutoMultiImagePlot

radnn/plots/plot_auto_multi_image.py

@@ -0,0 +1,112 @@
+# ......................................................................................
+# MIT License
+
+# Copyright (c) 2022-2025 Pantelis I. Kaplanoglou
+
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+
+# ......................................................................................
+
+import numpy as np
+import matplotlib.pyplot as plt
+
+class AutoMultiImagePlot(object):
+  def __init__(self, min=None, max=None, title=None):
+    self.rows = []
+    self.row_count = 0
+    self.row_titles = []
+    self.current_row = -1
+    self.row_col_count = dict()
+    self.max_col_count = 0
+    self.min = min
+    self.max = max
+    self.title = title
+
+  def add_row(self, row_title=None):
+    self.current_row = self.row_count
+    self.rows.append([])
+    self.row_count = len(self.rows)
+    self.row_titles.append(row_title)
+
+  def add_column(self, images, image_title=None, color_map=None, aspect=None, extent=None):
+    oRowColumns = self.rows[self.current_row]
+    dImage = {"image": images, "title": image_title
+      , "cmap": color_map, "aspect": aspect
+      , "extend": extent}
+
+    oRowColumns.append(dImage)
+    self.rows[self.current_row] = oRowColumns
+    nColCount = len(oRowColumns)
+
+    self.row_col_count[self.current_row] = nColCount
+    if nColCount > self.max_col_count:
+      self.max_col_count = nColCount
+
+  def prepare(self, title=None, figure_size=(15, 6), restrict_columns=None):
+
+    nColumns = restrict_columns
+    if nColumns is None:
+      nColumns = self.max_col_count
+    fig, oSubplotGrid = plt.subplots(nrows=self.row_count, ncols=nColumns
+                                     , figsize=figure_size
+                                     , subplot_kw={'xticks': [], 'yticks': []})
+    bIsSingleRow = self.row_count == 1
+    if bIsSingleRow:
+      oSubplotGrid = oSubplotGrid[np.newaxis, ...]
+
+    if title is None:
+      title = self.title
+    fig.suptitle(title)
+
+    for nRowIndex, oRowColumns in enumerate(self.rows):
+      if len(oRowColumns) > 0:
+        sRowTitle = self.row_titles[nRowIndex]
+        nImageCount = len(oRowColumns)
+        nIncr = nImageCount // nColumns
+        nImageIndex = 0
+        for nColIndex in range(nColumns):
+          bMustPlot = True
+          if (nIncr == 0) and (nColIndex > 0):
+            bMustPlot = False
+
+          if bMustPlot:
+            dImage = oRowColumns[nImageIndex]
+            oSubPlot = oSubplotGrid[nRowIndex, nColIndex]
+            oSubPlot.title.set_text(dImage["title"])
+            oSubPlot.imshow(dImage["image"], cmap=dImage["cmap"],
+                            aspect=dImage["aspect"], extent=dImage["extend"],
+                            vmin=self.min, vmax=self.max
+                            )
+            if nColIndex == 0:
+              oSubPlot.text(0.0, 0.5, sRowTitle, transform=oSubPlot.transAxes,
+                            horizontalalignment='right', verticalalignment='center',
+                            fontsize=9, fontweight='bold')
+          nImageIndex += nIncr
+
+    return self
+
+  # --------------------------------------------------------------------------------------
+  def save(self, filename):
+    plt.savefig(filename, bbox_inches='tight')
+    return self
+
+  # --------------------------------------------------------------------------------------
+  def show(self):
+    plt.show()
+  # --------------------------------------------------------------------------------------

radnn/system/files/jsonfile.py

@@ -51,7 +51,10 @@ class JSONFile(FileObject):
     filename = self._useFileName(filename)
 
     if obj is not None:
-      sJSON = json.dumps(obj, default=lambda o: o.__dict__, sort_keys=is_sorted_keys, indent=4)
+      if isinstance(obj, dict):
+        sJSON = json.dumps(obj, sort_keys=is_sorted_keys, indent=4)
+      else:
+        sJSON = json.dumps(obj, default=lambda o: obj.__dict__, sort_keys=is_sorted_keys, indent=4)
       with open(filename, "w") as oFile:
         oFile.write(sJSON)
         oFile.close()

radnn/system/filesystem.py

@@ -27,13 +27,10 @@ from radnn.core import system_name
 from radnn.system.filestore import FileStore
 from radnn.system.files import JSONFile
 
-
-
-
 # =======================================================================================================================
 class FileSystem(object):
   # --------------------------------------------------------------------------------------------------------
-  def __init__(self, config_folder="MLConfig", model_folder="MLModels", dataset_folder="MLData", must_exist=False, setup_filename="*auto*"):
+  def __init__(self, config_folder="MLConfig", model_folder="MLModels", dataset_folder="MLData", must_exist=False, setup_filename="*auto*", is_custom_setup=False):
     '''
     Initializes the file system settings for an experiment
     :param config_folder: The folder that contains the experiment hyperparameter files.
@@ -42,7 +39,6 @@ class FileSystem(object):
     :param setup_filename: The filename of the setup file.
     :param must_exist: False: Auto-creates the directories on the file system | True: Raises an error if it does not exist.
     '''
-
     self.setup_filename = setup_filename
     if self.setup_filename == "*auto*":
       self.setup_filename = system_name() + ".fsys"
@@ -51,7 +47,7 @@ class FileSystem(object):
     self.model_groups = []
 
     dSetup = None
-    if self.setup_filename is not None:
+    if (self.setup_filename is not None) and (not is_custom_setup):
       if os.path.exists(self.setup_filename):
         oFile = JSONFile(self.setup_filename)
         dSetup = oFile.load()

radnn/utils.py

@@ -0,0 +1,89 @@
+import numpy as np
+
+
+def print_tensor(tensor, title=None, format="%+.3f", axes_descr=["Sample"]):
+  # ................................................
+  def printElement(p_nElement, p_bIsScalar):
+    if p_bIsScalar:
+      print(format % p_nElement, end=" ")
+    else:
+      print(np.array2string(p_nElement, separator=",", formatter={'float': lambda x: format % x}), end=" ")
+
+  # ................................................
+  def strBoxLeft(p_nIndex, p_nCount):
+    if (p_nIndex == 0):
+      return "┌ "
+    elif (p_nIndex == (p_nCount - 1)):
+      return "└ "
+    else:
+      return "│ "
+
+  # ................................................
+  def strBoxRight(p_nIndex, p_nCount):
+    if (p_nIndex == 0):
+      return "┐ "
+    elif (p_nIndex == (p_nCount - 1)):
+      return "┘ "
+    else:
+      return "│ "
+
+  # ................................................
+
+  if len(tensor.shape) == 3:
+    tensor = tensor[np.newaxis, ...]
+  elif len(tensor.shape) == 2:
+    tensor = tensor[np.newaxis, ..., np.newaxis]
+  elif len(tensor.shape) == 5:
+    tensor = tensor[..., np.newaxis]
+  else:
+    raise Exception("Supported tensors are rank 2 to rank 5")
+
+  nSampleIndex = 0
+  nCount, nGridRows, nGridCols = tensor.shape[0:3]
+  nSliceCoordDigits = len(str(nGridRows))
+  if len(str(nGridCols)) > nSliceCoordDigits:
+    nSliceCoordDigits = len(str(nGridCols))
+
+  bIsGridOfTensors = (len(tensor.shape) == 6)
+  if bIsGridOfTensors:
+    nWindowRows, nWindowCols = tensor.shape[3:5]
+
+  bIsScalar = (tensor.shape[-1] == 1)
+
+  nSpaces = nSliceCoordDigits * 2 + 5
+  sSliceHeaders = ["X" + " " * (nSpaces - 3) + "= ",
+                   " %" + str(nSliceCoordDigits) + "d" ",%" + str(nSliceCoordDigits) + "d   ",
+                   " " * nSpaces]
+
+  print("-" * 70)
+  if title is None:
+    print(f"shape:{tensor.shape}")
+  else:
+    print(f"{title} shape:{tensor.shape}")
+  while nSampleIndex < nCount:
+    print(f"  {axes_descr[0]}:#{nSampleIndex}")
+    for nRow in range(0, nGridRows):
+      if bIsGridOfTensors:
+        for nY in range(nWindowRows):
+          for nCol in range(0, nGridCols):
+            if (nY == 0):
+              print(sSliceHeaders[0] + strBoxLeft(nY, nWindowRows), end="")
+            elif (nY == 1):
+              sBaseStr = sSliceHeaders[1] % (nRow, nCol)
+              print(sBaseStr + strBoxLeft(nY, nWindowRows), end="")
+            else:
+              print(sSliceHeaders[2] + strBoxLeft(nY, nWindowRows), end="")
+            for nX in range(nWindowCols):
+              printElement(tensor[nSampleIndex, nRow, nCol, nY, nX, ...], bIsScalar)
+
+            print(strBoxRight(nY, nWindowRows), end="")
+          print("")
+        print("")
+      else:
+        print(strBoxLeft(nRow, nGridRows), end="")
+        for nCol in range(0, nGridCols):
+          printElement(tensor[nSampleIndex, nRow, nCol, ...], bIsScalar)
+        print(strBoxRight(nRow, nGridRows))
+    print("." * 60)
+    nSampleIndex += 1
+# -----------------------------------------------------------------------------

{radnn-0.0.6.dist-info → radnn-0.0.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: radnn
-Version: 0.0.6
+Version: 0.0.7
 Summary: Rapid Deep Neural Networks
 Author-email: "Pantelis I. Kaplanoglou" <pikaplanoglou@ihu.gr>
 License: MIT License
@@ -45,7 +45,7 @@ Description-Content-Type: text/markdown
 License-File: LICENSE.txt
 Requires-Dist: numpy>=1.26.4
 Requires-Dist: matplotlib>=3.8.4
-Requires-Dist: pandas>=2.2.2
+Requires-Dist: pandas>=2.2.1
 Requires-Dist: scikit-learn>=1.4.2
 
 # radnn - Rapid Deep Neural Networks

radnn-0.0.7.dist-info/RECORD

@@ -0,0 +1,53 @@
+radnn/__init__.py,sha256=5uPiqiHDaYdsGupS0bxtGQ1SxcaxiupuprGmPP912zE,322
+radnn/core.py,sha256=c60Lv2osyy3S6IxYIfbMSC9QMwnyT8qPED2xy_UnM24,3399
+radnn/errors.py,sha256=upA3Afpvrkxexf956PwITHB-fR_V2n2k4Jn8HaZcpm8,150
+radnn/ml_system.py,sha256=YWvYd5E-DEhiLZRCcjkFAZp-s1eZgmLNkxScE9RHETE,3879
+radnn/utils.py,sha256=Q2nGUgyTGrhs0vxEmHfEZffWb7JBewmiygcHRaWw1W8,3100
+radnn/data/__init__.py,sha256=09OkpdAe59yJH74DuQrxLtCiiNXgX6E3F2MKjzz8Cns,117
+radnn/data/dataset_base.py,sha256=3b8UaJFBiN0cY8C9uZKFzRt0g_4Q_EZgVEKWgsAA4t8,15181
+radnn/data/image_dataset.py,sha256=REGEomCmt0IFcjxYWtziELJFBoVnfR_TDFtct3IGR8U,4520
+radnn/data/sample_set.py,sha256=rvRtS7EqLFVF4Hf6qmIuxE-fatFiqWbETnh5RWqVj5E,6685
+radnn/data/sequence_dataset.py,sha256=DZAFgatzpf86nI62TJV5limYP3dP_z30UgWV2dYTDgc,6209
+radnn/data/preprocess/__init__.py,sha256=6JTaWzzeXAbIXkH8O9JDawtObutCyXQjHEZdlofSics,74
+radnn/data/preprocess/normalizer.py,sha256=7ZD1Z2_nW8KAG7cJ1RCYn-TMzVcW7dqWLTAjSPzMXo8,5444
+radnn/data/preprocess/standardizer.py,sha256=tzH3aJ8seTw-UwxnAb0Z6eAkW5iPu1c12_Kenuv7X2Q,5019
+radnn/evaluation/__init__.py,sha256=7dXDyJfOpSAr7G8jfDofsW4YEHNElCTTyMXuLCtpoOI,59
+radnn/evaluation/evaluate_classification.py,sha256=Iiv0aZcIEzVMg8BNNxyNzl7g23SdMiENQxeEKep8Cpg,5497
+radnn/experiment/__init__.py,sha256=8gxrFS4bG7rg2kgrDEhemJgDbO-5KhBYc4owJZ-S--k,247
+radnn/experiment/ml_experiment.py,sha256=FPxOlzNLyDEqFBAyCc7zMrc26pQwr5grwbMCBsL89L8,17861
+radnn/experiment/ml_experiment_config.py,sha256=YFLaSpz8UPs_JZC_hPkZAUOfelLmmr1cAlgRfbL3TEs,9785
+radnn/experiment/ml_experiment_env.py,sha256=vF5sDLzIyLwme82VI4aKgmRxly-31THZyEc0dFof9dg,11206
+radnn/experiment/ml_experiment_store.py,sha256=qeujLZJ-qGoBlyib3BukT4PBiioaPm4L1X24aXQ7_yg,398
+radnn/learn/__init__.py,sha256=gF-5pD1OxrxhOeO7G7wbpr37LRjGkT71PY78Li3bBJU,252
+radnn/learn/keras_learning_rate_scheduler.py,sha256=l0c53dtq1W5oclXDLxXzUlmBG_hzO-19EFRw3518PJs,1156
+radnn/learn/keras_optimization_algorithm.py,sha256=ff3S_3CJ2t0N4_TZiGDpiAhExquRsqAGZDc42werGJo,1686
+radnn/learn/learning_algorithm.py,sha256=dRr3QWvY2kXIaEADKTFhEjLw8w99rv4HcgKk-sQ8-d4,1420
+radnn/learn/state/__init__.py,sha256=zExYBp7mkQlzDZX3jnzYa5piwOEFxUwe6ZvKI6IiE6o,117
+radnn/learn/state/keras_best_state_saver.py,sha256=ep9QP7bZqmN8XmSzUpRXuBh6ccrbhFdFL4p5c3pg3MA,883
+radnn/plots/__init__.py,sha256=dVd7QDrkD_fBUag4Kz3yTnPvBxaBgpDt16bbbNlqLKw,286
+radnn/plots/plot_auto_multi_image.py,sha256=0-Bmk3aqeO6AzxC2GEycsx6Wp0sByVZdX4NUp-_OnYA,4507
+radnn/plots/plot_confusion_matrix.py,sha256=KWW5k7-gaLPXO4oQBnzwAwgI-rvPOmqw8uiZbFlmU5o,2625
+radnn/plots/plot_learning_curve.py,sha256=tgx3vAm4rg5qScqxLQ2T82BqrRWjiYaIKgLQp5Y19cQ,3480
+radnn/plots/plot_multi_scatter.py,sha256=-VgSwi7knYTNrdW86RGon0MZ_r0JDoiWP9F_gWIvTuo,4797
+radnn/plots/plot_roc.py,sha256=iyOnhux2qFEs7W-szEOCg2VCkcnBEaOJxZkWWYuSnCQ,3493
+radnn/plots/plot_voronoi_2d.py,sha256=Kq3ZaLhLaFHQAurhFKNy7NNuIm3RArCk_WxPT8Ftxek,4409
+radnn/system/__init__.py,sha256=uJLg56njcLtaRO0Kyudat055DGxqWsLMvrn9P8_Rt6A,119
+radnn/system/filestore.py,sha256=gNESaiJNwdrFbkzcbkSv-O4V8vrBagOSR90WcFueNsA,8977
+radnn/system/filesystem.py,sha256=Q9eydbKF2syFax6D82kgcEaj6_h-rVgxLAs_6mm2JIc,5566
+radnn/system/tee_logger.py,sha256=WcyIJiW851PP6Jk7SyCHj63BEt7HnWa5-GJtw1CjGHE,2629
+radnn/system/files/__init__.py,sha256=u2oGHNKM362JwqrDgwmWTAiisL067h6H9uu-d0iTBks,169
+radnn/system/files/csvfile.py,sha256=9uKqmCdqLAKomANejcSruHle1r3gVdByQb1I2otLcMs,2246
+radnn/system/files/fileobject.py,sha256=qT9qzpH6YFSIzaKfILxhpaQ1P2o2tqRh9J5J2L_Kp8Y,3851
+radnn/system/files/imgfile.py,sha256=HxvvittOUG1mmIp-Bg8vHnLPtRYD-N4nE86G0Rcys6M,2242
+radnn/system/files/jsonfile.py,sha256=1IgfK0j58RjvkV7pw7Z5oR49W071OmsMceX7F4w0MZw,3291
+radnn/system/files/picklefile.py,sha256=0BFiYzr6BbGWMXyQCMjYHa_GlW8nEZ95CQtn7lpH254,5526
+radnn/system/files/textfile.py,sha256=r7FZ1pdFGYxKrQ_kgkEK35GIqRU8k_MjdB0OrDd5m0o,2891
+radnn/system/hosts/__init__.py,sha256=k2gkMJhe96Nf-V2ex6jZqmCRX9vA_K6gFB8J8Ii9ahc,261
+radnn/system/hosts/colab_host.py,sha256=tAuLn9gTkX9cCSEmm7sG1JmCtNIgFlASwBt2olHUSe4,2434
+radnn/system/hosts/linux_host.py,sha256=TZ-5JEZV0WNEB5trTbRWM0REhpuK5oYxoLodKKqhm9s,57
+radnn/system/hosts/windows_host.py,sha256=u4IvgfFoKWdrFy0hYG__AoxfEJYHF4-ISNXTCJ5uN8I,2257
+radnn-0.0.7.dist-info/LICENSE.txt,sha256=vYtt_GDvm_yW65X9YMBOOu8Vqc9SAvqH94TbfBc2ckU,1106
+radnn-0.0.7.dist-info/METADATA,sha256=nTJMpLFSrb6hQc9wbr_Zopmq3Ute5OE0i8Ey0NWoy7g,2861
+radnn-0.0.7.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+radnn-0.0.7.dist-info/top_level.txt,sha256=FKlLIm6gRAeZlRzs-HCBJAB1q9ELJ7MgaL-qqFuPo6M,6
+radnn-0.0.7.dist-info/RECORD,,

radnn-0.0.6.dist-info/RECORD

@@ -1,33 +0,0 @@
-radnn/__init__.py,sha256=9CEr23hNkWNU-R14QMatDBvWQG0oHNjFIBNT23Mfe2M,171
-radnn/core.py,sha256=cWGl_B3bHASEDdZHgDKN9CwGo7-TFjj3y2YD-Ei4bD4,2828
-radnn/evaluation/__init__.py,sha256=7dXDyJfOpSAr7G8jfDofsW4YEHNElCTTyMXuLCtpoOI,59
-radnn/evaluation/evaluate_classification.py,sha256=wacQ_02loI2ApOKrUIDTKqqrwi0_TpUZJQfTpJ6rtag,5497
-radnn/experiment/__init__.py,sha256=8gxrFS4bG7rg2kgrDEhemJgDbO-5KhBYc4owJZ-S--k,247
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