qlever 0.5.9__py3-none-any.whl → 0.5.10__py3-none-any.whl
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- qlever/Qleverfiles/Qleverfile.wikidata +5 -6
- qlever/commands/index.py +3 -1
- qlever/qleverfile.py +242 -131
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/METADATA +1 -1
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/RECORD +9 -9
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/WHEEL +1 -1
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/LICENSE +0 -0
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/entry_points.txt +0 -0
- {qlever-0.5.9.dist-info → qlever-0.5.10.dist-info}/top_level.txt +0 -0
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@@ -13,7 +13,7 @@ NAME = wikidata
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[data]
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GET_DATA_URL = https://dumps.wikimedia.org/wikidatawiki/entities
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GET_DATA_CMD = curl -
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GET_DATA_CMD = curl -LRC - -O ${GET_DATA_URL}/latest-all.ttl.bz2 -O ${GET_DATA_URL}/latest-lexemes.ttl.bz2 2>&1 | tee wikidata.download-log.txt && curl -sL ${GET_DATA_URL}/dcatap.rdf | docker run -i --rm -v $$(pwd):/data stain/jena riot --syntax=RDF/XML --output=NT /dev/stdin > dcatap.nt
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DATE_WIKIDATA = $$(date -r latest-all.ttl.bz2 +%d.%m.%Y || echo "NO_DATE")
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DATE_WIKIPEDIA = $$(date -r wikipedia-abstracts.nt +%d.%m.%Y || echo "NO_DATE")
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DESCRIPTION = Full Wikidata dump from ${GET_DATA_URL} (latest-all.ttl.bz2 and latest-lexemes.ttl.bz2, version ${DATE_WIKIDATA}) + English Wikipeda abstracts (version ${DATE_WIKIPEDIA}, available via schema:description)
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@@ -23,7 +23,6 @@ TEXT_DESCRIPTION = All English and German literals + all sentences from the Eng
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INPUT_FILES = latest-all.ttl.bz2 latest-lexemes.ttl.bz2 wikipedia-abstracts.nt dcatap.nt
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MULTI_INPUT_JSON = [{ "cmd": "lbzcat -n 4 latest-all.ttl.bz2", "format": "ttl", "parallel": "true" },
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{ "cmd": "lbzcat -n 1 latest-lexemes.ttl.bz2", "format": "ttl", "parallel": "false" },
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{ "cmd": "cat wikipedia-abstracts.nt", "format": "nt", "parallel": "false" },
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{ "cmd": "cat dcatap.nt", "format": "nt", "parallel": "false" }]
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SETTINGS_JSON = { "languages-internal": [], "prefixes-external": [""], "locale": { "language": "en", "country": "US", "ignore-punctuation": true }, "ascii-prefixes-only": true, "num-triples-per-batch": 5000000 }
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STXXL_MEMORY = 10G
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@@ -31,11 +30,11 @@ TEXT_INDEX = from_text_records
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[server]
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PORT = 7001
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ACCESS_TOKEN = ${data:NAME}
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MEMORY_FOR_QUERIES =
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CACHE_MAX_SIZE =
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ACCESS_TOKEN = ${data:NAME}
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MEMORY_FOR_QUERIES = 20G
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CACHE_MAX_SIZE = 15G
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CACHE_MAX_SIZE_SINGLE_ENTRY = 5G
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TIMEOUT =
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TIMEOUT = 600s
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[runtime]
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SYSTEM = docker
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qlever/commands/index.py
CHANGED
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@@ -28,7 +28,7 @@ class IndexCommand(QleverCommand):
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def relevant_qleverfile_arguments(self) -> dict[str: list[str]]:
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return {"data": ["name", "format"],
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"index": ["input_files", "cat_input_files", "multi_input_json",
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"settings_json", "index_binary",
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"parallel_parsing", "settings_json", "index_binary",
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"only_pso_and_pos_permutations", "use_patterns",
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"text_index", "stxxl_memory"],
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"runtime": ["system", "image", "index_container"]}
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@@ -111,6 +111,8 @@ class IndexCommand(QleverCommand):
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index_cmd = (f"{args.cat_input_files} | {args.index_binary}"
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f" -i {args.name} -s {args.name}.settings.json"
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f" -F {args.format} -f -")
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if args.parallel_parsing:
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index_cmd += (f" -p {args.parallel_parsing}")
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elif args.multi_input_json and not args.cat_input_files:
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try:
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input_options = self.get_input_options_for_json(args)
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qlever/qleverfile.py
CHANGED
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@@ -40,170 +40,277 @@ class Qleverfile:
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ui_args = all_args["ui"] = {}
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data_args["name"] = arg(
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"--name", type=str, required=True, help="The name of the dataset"
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)
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data_args["get_data_cmd"] = arg(
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"--get-data-cmd",
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type=str,
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required=True,
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help="The command to get the data",
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)
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data_args["description"] = arg(
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"--description",
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type=str,
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required=True,
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help="A concise description of the dataset",
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)
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data_args["text_description"] = arg(
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"--text-description",
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type=str,
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default=None,
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help="A concise description of the additional text data" " if any",
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)
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data_args["format"] = arg(
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-
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"--format",
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type=str,
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default="ttl",
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choices=["ttl", "nt", "nq"],
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help="The format of the data",
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)
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index_args["input_files"] = arg(
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"--input-files",
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type=str,
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required=True,
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help="A space-separated list of patterns that match "
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"all the files of the dataset",
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)
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index_args["cat_input_files"] = arg(
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"--cat-input-files", type=str, help="The command that produces the input"
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)
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index_args["multi_input_json"] = arg(
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"--multi-input-json",
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type=str,
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default=None,
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help="JSON to specify multiple input files, each with a "
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"`cmd` (command that writes the triples to stdout), "
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"`format` (format like for the `--format` option), "
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"`graph` (name of the graph, use `-` for the default graph), "
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"`parallel` (parallel parsing for large files, where all "
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"prefix declaration are at the beginning)",
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)
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index_args["parallel_parsing"] = arg(
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"--parallel-parsing",
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type=str,
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choices=["true", "false"],
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help="Use parallel parsing (recommended for large files, "
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"but it requires that all prefix declarations are at the "
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"beginning of the file)",
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)
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index_args["settings_json"] = arg(
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"--settings-json",
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type=str,
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default="{}",
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help="The `.settings.json` file for the index",
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)
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index_args["index_binary"] = arg(
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"--index-binary",
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type=str,
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default="IndexBuilderMain",
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help="The binary for building the index (this requires "
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"that you have compiled QLever on your machine)",
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)
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index_args["stxxl_memory"] = arg(
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"--stxxl-memory",
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type=str,
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default="5G",
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help="The amount of memory to use for the index build "
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"(the name of the option has historical reasons)",
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)
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index_args["only_pso_and_pos_permutations"] = arg(
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"--only-pso-and-pos-permutations",
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action="store_true",
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default=False,
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help="Only create the PSO and POS permutations",
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)
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index_args["use_patterns"] = arg(
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"--use-patterns",
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action="store_true",
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default=True,
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help="Precompute so-called patterns needed for fast processing"
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" of queries like SELECT ?p (COUNT(DISTINCT ?s) AS ?c) "
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"WHERE { ?s ?p [] ... } GROUP BY ?p",
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)
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index_args["text_index"] = arg(
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"--text-index",
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choices=[
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"none",
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"from_text_records",
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"from_literals",
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"from_text_records_and_literals",
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],
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default="none",
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help="Whether to also build an index for text search" "and for which texts",
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index_args["text_words_file"] = arg(
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"--text-words-file",
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type=str,
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default=None,
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help="File with the words for the text index (one line "
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"per word, format: `word or IRI\t0 or 1\tdoc id\t1`)",
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)
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index_args["text_docs_file"] = arg(
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"--text-docs-file",
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type=str,
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default=None,
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help="File with the documents for the text index (one line "
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"per document, format: `id\tdocument text`)",
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)
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server_args["server_binary"] = arg(
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type=str,
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default="ServerMain",
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help="The binary for starting the server (this requires "
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"that you have compiled QLever on your machine)",
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)
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server_args["host_name"] = arg(
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"--host-name",
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type=str,
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default="localhost",
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help="The name of the host on which the server listens for " "requests",
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server_args["port"] = arg(
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"--port", type=int, help="The port on which the server listens for requests"
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server_args["access_token"] = arg(
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type=str,
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default=None,
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help="The access token for privileged operations",
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server_args["memory_for_queries"] = arg(
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"--memory-for-queries",
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type=str,
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default="5G",
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help="The maximal amount of memory used for query processing"
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" (if a query needs more than what is available, the "
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"query will not be processed)",
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server_args["cache_max_size"] = arg(
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default="2G",
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help="The maximal amount of memory used for caching",
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server_args["cache_max_size_single_entry"] = arg(
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help="The maximal amount of memory used for caching a single "
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server_args["cache_max_num_entries"] = arg(
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default=200,
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help="The maximal number of entries in the cache"
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" (the eviction policy when the cache is full is LRU)",
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server_args["timeout"] = arg(
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default="30s",
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help="The maximal time in seconds a query is allowed to run"
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" (can be increased per query with the URL parameters "
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"`timeout` and `access_token`)",
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server_args["num_threads"] = arg(
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"--num-threads",
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type=int,
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default=8,
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help="The number of threads used for query processing",
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server_args["only_pso_and_pos_permutations"] = arg(
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"--only-pso-and-pos-permutations",
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action="store_true",
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default=False,
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help="Only use the PSO and POS permutations (then each "
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+
"triple pattern must have a fixed predicate)",
|
|
230
|
+
)
|
|
154
231
|
server_args["use_patterns"] = arg(
|
|
155
|
-
|
|
156
|
-
|
|
157
|
-
|
|
232
|
+
"--use-patterns",
|
|
233
|
+
action="store_true",
|
|
234
|
+
default=True,
|
|
235
|
+
help="Use the patterns precomputed during the index build"
|
|
236
|
+
" (see `qlever index --help` for their utility)",
|
|
237
|
+
)
|
|
158
238
|
server_args["use_text_index"] = arg(
|
|
159
|
-
|
|
160
|
-
|
|
161
|
-
|
|
239
|
+
"--use-text-index",
|
|
240
|
+
choices=["yes", "no"],
|
|
241
|
+
default="no",
|
|
242
|
+
help="Whether to use the text index (requires that one was "
|
|
243
|
+
"built, see `qlever index`)",
|
|
244
|
+
)
|
|
162
245
|
server_args["warmup_cmd"] = arg(
|
|
163
|
-
|
|
164
|
-
|
|
165
|
-
|
|
166
|
-
|
|
246
|
+
"--warmup-cmd",
|
|
247
|
+
type=str,
|
|
248
|
+
help="Command executed after the server has started "
|
|
249
|
+
" (executed as part of `qlever start` unless "
|
|
250
|
+
" `--no-warmup` is specified, or with `qlever warmup`)",
|
|
251
|
+
)
|
|
167
252
|
|
|
168
253
|
runtime_args["system"] = arg(
|
|
169
|
-
|
|
170
|
-
|
|
171
|
-
|
|
172
|
-
|
|
173
|
-
|
|
174
|
-
|
|
254
|
+
"--system",
|
|
255
|
+
type=str,
|
|
256
|
+
choices=Containerize.supported_systems() + ["native"],
|
|
257
|
+
default="docker",
|
|
258
|
+
help=(
|
|
259
|
+
"Whether to run commands like `index` or `start` "
|
|
260
|
+
"natively or in a container, and if in a container, "
|
|
261
|
+
"which system to use"
|
|
262
|
+
),
|
|
263
|
+
)
|
|
175
264
|
runtime_args["image"] = arg(
|
|
176
|
-
|
|
177
|
-
|
|
178
|
-
|
|
265
|
+
"--image",
|
|
266
|
+
type=str,
|
|
267
|
+
default="docker.io/adfreiburg/qlever",
|
|
268
|
+
help="The name of the image when running in a container",
|
|
269
|
+
)
|
|
179
270
|
runtime_args["index_container"] = arg(
|
|
180
|
-
|
|
181
|
-
|
|
271
|
+
"--index-container",
|
|
272
|
+
type=str,
|
|
273
|
+
help="The name of the container used by `qlever index`",
|
|
274
|
+
)
|
|
182
275
|
runtime_args["server_container"] = arg(
|
|
183
|
-
|
|
184
|
-
|
|
276
|
+
"--server-container",
|
|
277
|
+
type=str,
|
|
278
|
+
help="The name of the container used by `qlever start`",
|
|
279
|
+
)
|
|
185
280
|
|
|
186
281
|
ui_args["ui_port"] = arg(
|
|
187
|
-
|
|
188
|
-
|
|
282
|
+
"--ui-port",
|
|
283
|
+
type=int,
|
|
284
|
+
default=8176,
|
|
285
|
+
help="The port of the Qlever UI when running `qlever ui`",
|
|
286
|
+
)
|
|
189
287
|
ui_args["ui_config"] = arg(
|
|
190
|
-
|
|
191
|
-
|
|
192
|
-
|
|
288
|
+
"--ui-config",
|
|
289
|
+
type=str,
|
|
290
|
+
default="default",
|
|
291
|
+
help="The name of the backend configuration for the QLever UI"
|
|
292
|
+
" (this determines AC queries and example queries)",
|
|
293
|
+
)
|
|
193
294
|
ui_args["ui_system"] = arg(
|
|
194
|
-
|
|
195
|
-
|
|
196
|
-
|
|
197
|
-
|
|
198
|
-
|
|
199
|
-
|
|
295
|
+
"--ui-system",
|
|
296
|
+
type=str,
|
|
297
|
+
choices=Containerize.supported_systems(),
|
|
298
|
+
default="docker",
|
|
299
|
+
help="Which container system to use for `qlever ui`"
|
|
300
|
+
" (unlike for `qlever index` and `qlever start`, "
|
|
301
|
+
' "native" is not yet supported here)',
|
|
302
|
+
)
|
|
200
303
|
ui_args["ui_image"] = arg(
|
|
201
|
-
|
|
202
|
-
|
|
203
|
-
|
|
304
|
+
"--ui-image",
|
|
305
|
+
type=str,
|
|
306
|
+
default="docker.io/adfreiburg/qlever-ui",
|
|
307
|
+
help="The name of the image used for `qlever ui`",
|
|
308
|
+
)
|
|
204
309
|
ui_args["ui_container"] = arg(
|
|
205
|
-
|
|
206
|
-
|
|
310
|
+
"--ui-container",
|
|
311
|
+
type=str,
|
|
312
|
+
help="The name of the container used for `qlever ui`",
|
|
313
|
+
)
|
|
207
314
|
|
|
208
315
|
return all_args
|
|
209
316
|
|
|
@@ -221,8 +328,7 @@ class Qleverfile:
|
|
|
221
328
|
|
|
222
329
|
# Read the Qleverfile.
|
|
223
330
|
defaults = {"random": "83724324hztz", "version": "01.01.01"}
|
|
224
|
-
config = ConfigParser(interpolation=ExtendedInterpolation(),
|
|
225
|
-
defaults=defaults)
|
|
331
|
+
config = ConfigParser(interpolation=ExtendedInterpolation(), defaults=defaults)
|
|
226
332
|
try:
|
|
227
333
|
config.read(qleverfile_path)
|
|
228
334
|
except Exception as e:
|
|
@@ -237,13 +343,18 @@ class Qleverfile:
|
|
|
237
343
|
if match:
|
|
238
344
|
try:
|
|
239
345
|
value = subprocess.check_output(
|
|
240
|
-
|
|
241
|
-
|
|
346
|
+
match.group(1),
|
|
347
|
+
shell=True,
|
|
348
|
+
text=True,
|
|
349
|
+
stderr=subprocess.STDOUT,
|
|
350
|
+
).strip()
|
|
242
351
|
except Exception as e:
|
|
243
352
|
log.info("")
|
|
244
|
-
log.error(
|
|
245
|
-
|
|
246
|
-
|
|
353
|
+
log.error(
|
|
354
|
+
f"Error evaluating {value} for option "
|
|
355
|
+
f"{section}.{option.upper()} in "
|
|
356
|
+
f"{qleverfile_path}:"
|
|
357
|
+
)
|
|
247
358
|
log.info("")
|
|
248
359
|
log.info(e.output if hasattr(e, "output") else e)
|
|
249
360
|
exit(1)
|
|
@@ -270,8 +381,8 @@ class Qleverfile:
|
|
|
270
381
|
if "text_docs_file" not in index:
|
|
271
382
|
index["text_docs_file"] = f"{name}.docsfile.tsv"
|
|
272
383
|
server = config["server"]
|
|
273
|
-
|
|
274
|
-
|
|
384
|
+
if index.get("text_index", "none") != "none":
|
|
385
|
+
server["use_text_index"] = "yes"
|
|
275
386
|
|
|
276
387
|
# Return the parsed Qleverfile with the added inherited values.
|
|
277
388
|
return config
|
|
@@ -5,7 +5,7 @@ qlever/containerize.py,sha256=bnHmjKIFEe-NcuAMRNnXAFjRVLcLnk9f5JspCCyhgt8,5210
|
|
|
5
5
|
qlever/log.py,sha256=2O_RvFymnu_dB10ErBTAOsI8bgjORfdD0tE3USH-siM,1315
|
|
6
6
|
qlever/qlever_main.py,sha256=tA_xqOs_FjvqlDIvKTprwuysfTwzsUjE7at26gRhCVA,2336
|
|
7
7
|
qlever/qlever_old.py,sha256=X-JxmepFKYeFgSLLp0TRDNqXSxDwIbc8_0Xstiems8c,62026
|
|
8
|
-
qlever/qleverfile.py,sha256=
|
|
8
|
+
qlever/qleverfile.py,sha256=lygAjI5_wV_e-JoIGIqVTdd4yyvApzZiSlqSsmdlJpU,14529
|
|
9
9
|
qlever/util.py,sha256=qLxBRyHPT2VTj0xcOCFcP6HV-Lm-g-64QpvOc4V0_a8,8029
|
|
10
10
|
qlever/Qleverfiles/Qleverfile.dblp,sha256=wXZweNfYgEx-IGF1vIJMgqYUSWanQlzPj1EzUOGVuXA,1340
|
|
11
11
|
qlever/Qleverfiles/Qleverfile.dblp-plus,sha256=TJHxp8I1P6JKJjbuAllEpB32-huuY1gH0FlenqPVJ5g,1334
|
|
@@ -24,7 +24,7 @@ qlever/Qleverfiles/Qleverfile.pubchem,sha256=YuDzWQmukSvL1opu7cf1KX9407_P21lmecY
|
|
|
24
24
|
qlever/Qleverfiles/Qleverfile.scientists,sha256=9eZ2c6P9a3E3VHa3RR7LdOQbF4k3oyyrn56Z3u4LZYs,1164
|
|
25
25
|
qlever/Qleverfiles/Qleverfile.uniprot,sha256=9kAKseomdUnIt7EAZge39g1MTuaLVaSW9JYLHzIMolM,2338
|
|
26
26
|
qlever/Qleverfiles/Qleverfile.vvz,sha256=cLzm85erKoFCDllH5eFcSi35MdR6Tahj1MgtvGRxanM,922
|
|
27
|
-
qlever/Qleverfiles/Qleverfile.wikidata,sha256=
|
|
27
|
+
qlever/Qleverfiles/Qleverfile.wikidata,sha256=cvXmyWs1Qe2ZCtnOJpWn0cR6oz549zK785CbKse0Ogw,2366
|
|
28
28
|
qlever/Qleverfiles/Qleverfile.wikipathways,sha256=UFEVLrtOBiSQfibBN9xc2wDXrnWcnx5f8PY9khcE6bc,1983
|
|
29
29
|
qlever/Qleverfiles/Qleverfile.yago-4,sha256=hAS_2ZmC1zxNsKXip7t1F_iqu3CC-6O7v6HZhuFbnWY,1819
|
|
30
30
|
qlever/commands/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
@@ -33,7 +33,7 @@ qlever/commands/cache_stats.py,sha256=6JjueQstAqc8dNfgY8TP2EitFMxdUvCwrcyd7KUEb2
|
|
|
33
33
|
qlever/commands/clear_cache.py,sha256=AnE1MOoj1ZexxrRT8FGeBLlv8rtQIVV4DP8VBn5-X-s,2843
|
|
34
34
|
qlever/commands/example_queries.py,sha256=rtMOQw7cJe0Aia_1O7UyKcxHbz7ln9BSZYWUQI9OFA8,16389
|
|
35
35
|
qlever/commands/get_data.py,sha256=f9kjZI3TKad6JHSuXWNkeoajmW8h0Sx8ShvjauDCtNo,1412
|
|
36
|
-
qlever/commands/index.py,sha256=
|
|
36
|
+
qlever/commands/index.py,sha256=G4SPxJ1PW8KsLYl4OBV4rOLKSo-O3aR6nTT_0K6zAgU,10376
|
|
37
37
|
qlever/commands/index_stats.py,sha256=_BiUNBhmbYd9RPxrlm4HF0oENO6JmqnRiAkwkyOdN4U,11722
|
|
38
38
|
qlever/commands/log.py,sha256=8Krt3MsTUDapYqVw1zUu5X15SF8mV97Uj0qKOWK8jXk,1861
|
|
39
39
|
qlever/commands/query.py,sha256=_IDH-M8gKL_f1i5wzu0X452pZSUD0_qXl6bPXC85wX0,2750
|
|
@@ -44,9 +44,9 @@ qlever/commands/stop.py,sha256=TZs4bxKHvujlZAU8BZmFjA5eXSZNAa6EeNzvPpEZsuI,4139
|
|
|
44
44
|
qlever/commands/system_info.py,sha256=SShsnEV7QROgdbABeJ6Wk4U_CNjqlYO1J5HrpNCVNMs,4615
|
|
45
45
|
qlever/commands/ui.py,sha256=rZxIYHZr-PqgQKfvVwl8woDnTGR-sFc-f6cPjcORaOk,3611
|
|
46
46
|
qlever/commands/warmup.py,sha256=WOZSxeV8U_F6pEEnAb6YybXLQMxZFTRJXs4BPHUhsmc,1030
|
|
47
|
-
qlever-0.5.
|
|
48
|
-
qlever-0.5.
|
|
49
|
-
qlever-0.5.
|
|
50
|
-
qlever-0.5.
|
|
51
|
-
qlever-0.5.
|
|
52
|
-
qlever-0.5.
|
|
47
|
+
qlever-0.5.10.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
|
|
48
|
+
qlever-0.5.10.dist-info/METADATA,sha256=wb4LNzUZBdcNtASi4oYfBeO0-RqFbLeSFAY296SmBg8,4583
|
|
49
|
+
qlever-0.5.10.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
|
|
50
|
+
qlever-0.5.10.dist-info/entry_points.txt,sha256=U_gbYYi0wwdsn884eb0XoOXfvhACOsxhlO330dZ9bi0,87
|
|
51
|
+
qlever-0.5.10.dist-info/top_level.txt,sha256=kd3zsYqiFd0--Czh5XTVkfEq6XR-XgRFW35X0v0GT-c,7
|
|
52
|
+
qlever-0.5.10.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|