pyxetabase 3.1.0.dev25__py3-none-any.whl → 4.0.0.dev29__py3-none-any.whl

pyopencga/rest_clients/organization_client.py

@@ -1,216 +0,0 @@
-"""
-WARNING: AUTOGENERATED CODE
-
-    This code was generated by a tool.
-    
-    Manual changes to this file may cause unexpected behavior in your application.
-    Manual changes to this file will be overwritten if the code is regenerated.
-"""
-
-from pyopencga.rest_clients._parent_rest_clients import _ParentRestClient
-
-
-class Organization(_ParentRestClient):
-    """
-    This class contains methods for the 'Organizations' webservices
-    PATH: /{apiVersion}/organizations
-    """
-
-    def __init__(self, configuration, token=None, login_handler=None, *args, **kwargs):
-        super(Organization, self).__init__(configuration, token, login_handler, *args, **kwargs)
-
-    def create(self, data=None, **options):
-        """
-        Create a new organization.
-        PATH: /{apiVersion}/organizations/create
-
-        :param dict data: JSON containing the organization to be created.
-            (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='organizations', resource='create', data=data, **options)
-
-    def create_notes(self, data=None, **options):
-        """
-        Create a new note.
-        PATH: /{apiVersion}/organizations/notes/create
-
-        :param dict data: JSON containing the Note to be added. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='organizations', resource='create', subcategory='notes', data=data, **options)
-
-    def search_notes(self, **options):
-        """
-        Search for notes of scope ORGANIZATION.
-        PATH: /{apiVersion}/organizations/notes/search
-
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param str creation_date: Creation date. Format: yyyyMMddHHmmss.
-            Examples: >2018, 2017-2018, <201805.
-        :param str modification_date: Modification date. Format:
-            yyyyMMddHHmmss. Examples: >2018, 2017-2018, <201805.
-        :param str id: Note unique identifier.
-        :param str type: Note type.
-        :param str scope: Scope of the Note.
-        :param str visibility: Visibility of the Note.
-        :param str uuid: Unique 32-character identifier assigned automatically
-            by OpenCGA.
-        :param str user_id: User that wrote that Note.
-        :param str tags: Note tags.
-        :param str version: Autoincremental version assigned to the registered
-            entry. By default, updates does not create new versions. To enable
-            versioning, users must set the `incVersion` flag from the /update
-            web service when updating the document.
-        """
-
-        return self._get(category='organizations', resource='search', subcategory='notes', **options)
-
-    def delete_notes(self, id, **options):
-        """
-        Delete note.
-        PATH: /{apiVersion}/organizations/notes/{id}/delete
-
-        :param str id: Note unique identifier. (REQUIRED)
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._delete(category='organizations', resource='delete', subcategory='notes', second_query_id=id, **options)
-
-    def update_notes(self, id, data=None, **options):
-        """
-        Update a note.
-        PATH: /{apiVersion}/organizations/notes/{id}/update
-
-        :param dict data: JSON containing the Note fields to be updated.
-            (REQUIRED)
-        :param str id: Note unique identifier. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param str tags_action: Action to be performed if the array of tags is
-            being updated. Allowed values: ['ADD SET REMOVE']
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='organizations', resource='update', subcategory='notes', second_query_id=id, data=data, **options)
-
-    def reset_user_password(self, **options):
-        """
-        Reset user's password.
-        PATH: /{apiVersion}/organizations/user/password/reset
-
-        :param str user_id: User whose password needs to be reset.
-        """
-
-        return self._post(category='organizations', resource='reset', subcategory='user/password', **options)
-
-    def user_update_status(self, user, data=None, **options):
-        """
-        Update the user status.
-        PATH: /{apiVersion}/organizations/user/{user}/status/update
-
-        :param dict data: JSON containing the User fields to be updated.
-            (REQUIRED)
-        :param str user: User ID. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param str organization: Organization id.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='organizations/user', resource='update', query_id=user, subcategory='status', data=data, **options)
-
-    def update_user(self, user, data=None, **options):
-        """
-        Update the user information.
-        PATH: /{apiVersion}/organizations/user/{user}/update
-
-        :param dict data: JSON containing the User fields to be updated.
-            (REQUIRED)
-        :param str user: User ID. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param str organization: Organization id.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='organizations', resource='update', subcategory='user', second_query_id=user, data=data, **options)
-
-    def update_configuration(self, organization, data=None, **options):
-        """
-        Update the Organization configuration attributes.
-        PATH: /{apiVersion}/organizations/{organization}/configuration/update
-
-        :param dict data: JSON containing the params to be updated. (REQUIRED)
-        :param str organization: Organization id. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        :param str authentication_origins_action: Action to be performed if
-            the array of authenticationOrigins is being updated. Allowed
-            values: ['ADD SET REMOVE REPLACE']
-        """
-
-        return self._post(category='organizations', resource='update', query_id=organization, subcategory='configuration', data=data, **options)
-
-    def info(self, organization, **options):
-        """
-        Return the organization information.
-        PATH: /{apiVersion}/organizations/{organization}/info
-
-        :param str organization: Organization id. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        """
-
-        return self._get(category='organizations', resource='info', query_id=organization, **options)
-
-    def update(self, organization, data=None, **options):
-        """
-        Update some organization attributes.
-        PATH: /{apiVersion}/organizations/{organization}/update
-
-        :param dict data: JSON containing the params to be updated. (REQUIRED)
-        :param str organization: Organization id. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        :param str admins_action: Action to be performed if the array of
-            admins is being updated. Allowed values: ['ADD REMOVE']
-        """
-
-        return self._post(category='organizations', resource='update', query_id=organization, data=data, **options)
-

pyopencga/rest_clients/project_client.py

@@ -1,128 +0,0 @@
-"""
-WARNING: AUTOGENERATED CODE
-
-    This code was generated by a tool.
-    
-    Manual changes to this file may cause unexpected behavior in your application.
-    Manual changes to this file will be overwritten if the code is regenerated.
-"""
-
-from pyopencga.rest_clients._parent_rest_clients import _ParentRestClient
-
-
-class Project(_ParentRestClient):
-    """
-    This class contains methods for the 'Projects' webservices
-    PATH: /{apiVersion}/projects
-    """
-
-    def __init__(self, configuration, token=None, login_handler=None, *args, **kwargs):
-        super(Project, self).__init__(configuration, token, login_handler, *args, **kwargs)
-
-    def create(self, data=None, **options):
-        """
-        Create a new project.
-        PATH: /{apiVersion}/projects/create
-
-        :param dict data: JSON containing the mandatory parameters. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='projects', resource='create', data=data, **options)
-
-    def search(self, **options):
-        """
-        Search projects.
-        PATH: /{apiVersion}/projects/search
-
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param int limit: Number of results to be returned.
-        :param int skip: Number of results to skip.
-        :param str organization: Project organization.
-        :param str id: Project [organization@]project where project can be
-            either the ID or the alias.
-        :param str name: Project name.
-        :param str fqn: Project fqn.
-        :param str description: Project description.
-        :param str study: Study id.
-        :param str creation_date: Creation date. Format: yyyyMMddHHmmss.
-            Examples: >2018, 2017-2018, <201805.
-        :param str modification_date: Modification date. Format:
-            yyyyMMddHHmmss. Examples: >2018, 2017-2018, <201805.
-        :param str internal_status: Filter by internal status.
-        :param str attributes: Attributes.
-        """
-
-        return self._get(category='projects', resource='search', **options)
-
-    def info(self, projects, **options):
-        """
-        Fetch project information.
-        PATH: /{apiVersion}/projects/{projects}/info
-
-        :param str projects: Comma separated list of projects
-            [organization@]project up to a maximum of 100. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        """
-
-        return self._get(category='projects', resource='info', query_id=projects, **options)
-
-    def inc_release(self, project, **options):
-        """
-        Increment current release number in the project.
-        PATH: /{apiVersion}/projects/{project}/incRelease
-
-        :param str project: Project [organization@]project where project can
-            be either the ID or the alias. (REQUIRED)
-        """
-
-        return self._post(category='projects', resource='incRelease', query_id=project, **options)
-
-    def studies(self, project, **options):
-        """
-        Fetch all the studies contained in the project.
-        PATH: /{apiVersion}/projects/{project}/studies
-
-        :param str project: Project [organization@]project where project can
-            be either the ID or the alias. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param int limit: Number of results to be returned.
-        :param int skip: Number of results to skip.
-        """
-
-        return self._get(category='projects', resource='studies', query_id=project, **options)
-
-    def update(self, project, data=None, **options):
-        """
-        Update some project attributes.
-        PATH: /{apiVersion}/projects/{project}/update
-
-        :param dict data: JSON containing the params to be updated. It will be
-            only possible to update organism fields not previously defined.
-            (REQUIRED)
-        :param str project: Project [organization@]project where project can
-            be either the ID or the alias. (REQUIRED)
-        :param str include: Fields included in the response, whole JSON path
-            must be provided.
-        :param str exclude: Fields excluded in the response, whole JSON path
-            must be provided.
-        :param bool include_result: Flag indicating to include the created or
-            updated document result in the response.
-        """
-
-        return self._post(category='projects', resource='update', query_id=project, data=data, **options)
-