pyxetabase 3.1.0.dev15__py3-none-any.whl → 3.1.0.dev17__py3-none-any.whl

pyopencga/rest_clients/file_client.py

@@ -420,7 +420,7 @@ class File(_ParentRestClient):
             MICROARRAY_EXPRESSION_TWOCHANNELS_GENEPIX DATAMATRIX_EXPRESSION
             IDLIST IDLIST_RANKED ANNOTATION_GENEVSANNOTATION OTHER_NEWICK
             OTHER_BLAST OTHER_INTERACTION OTHER_GENOTYPE OTHER_PLINK OTHER_VCF
-            OTHER_PED VCF4 CVDB VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
+            OTHER_PED VCF4 VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
             REFERENCE_GENOME NONE UNKNOWN']
         :param str checksum: Expected MD5 file checksum.
         :param bool resource: Boolean field indicating whether the file is a

pyopencga/rest_clients/meta_client.py

@@ -55,15 +55,16 @@ class Meta(_ParentRestClient):
 
         return self._get(category='meta', resource='model', **options)
 
-    def openapi(self, **options):
+    def openapi(self, url, **options):
         """
         Opencga openapi json.
         PATH: /{apiVersion}/meta/openapi
 
-        :param str environment: Environment of the app.
-        :param str host: Opencga host without environment.
+        :param str url: Opencga host with environment. (REQUIRED)
+        :param str study: Opencga study to be default in queries.
         """
 
+        options['url'] = url
         return self._get(category='meta', resource='openapi', **options)
 
     def ping(self, **options):

pyxetabase/rest_clients/file_client.py

@@ -420,7 +420,7 @@ class File(_ParentRestClient):
             MICROARRAY_EXPRESSION_TWOCHANNELS_GENEPIX DATAMATRIX_EXPRESSION
             IDLIST IDLIST_RANKED ANNOTATION_GENEVSANNOTATION OTHER_NEWICK
             OTHER_BLAST OTHER_INTERACTION OTHER_GENOTYPE OTHER_PLINK OTHER_VCF
-            OTHER_PED VCF4 CVDB VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
+            OTHER_PED VCF4 VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
             REFERENCE_GENOME NONE UNKNOWN']
         :param str checksum: Expected MD5 file checksum.
         :param bool resource: Boolean field indicating whether the file is a

pyxetabase/rest_clients/meta_client.py

@@ -55,15 +55,16 @@ class Meta(_ParentRestClient):
 
         return self._get(category='meta', resource='model', **options)
 
-    def openapi(self, **options):
+    def openapi(self, url, **options):
         """
         Opencga openapi json.
         PATH: /{apiVersion}/meta/openapi
 
-        :param str environment: Environment of the app.
-        :param str host: Opencga host without environment.
+        :param str url: Opencga host with environment. (REQUIRED)
+        :param str study: Opencga study to be default in queries.
         """
 
+        options['url'] = url
         return self._get(category='meta', resource='openapi', **options)
 
     def ping(self, **options):

{pyxetabase-3.1.0.dev15.dist-info → pyxetabase-3.1.0.dev17.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyxetabase
-Version: 3.1.0.dev15
+Version: 3.1.0.dev17
 Summary: A REST client for OpenCGA enterprise REST web services
 Author: Daniel Perez-Gil
 Author-email: daniel.perez@zettagenomics.com

{pyxetabase-3.1.0.dev15.dist-info → pyxetabase-3.1.0.dev17.dist-info}/RECORD

@@ -13,11 +13,11 @@ pyopencga/rest_clients/clinical_analysis_client.py,sha256=e14y-qJznmAIMsIVpdh2yn
 pyopencga/rest_clients/cohort_client.py,sha256=6HcNiUL3WVsLfRtcitwJuxyraECJ6RExV8GvE2oQhDM,16323
 pyopencga/rest_clients/disease_panel_client.py,sha256=dD5_nzetek5Hk2sSqT1JasdNu8ohkO3yMfdY76jGU8U,18512
 pyopencga/rest_clients/family_client.py,sha256=MC8WHfzycB7WeRqb8FZEt2YLFTNrdSnky-bHwsr-6uY,18585
-pyopencga/rest_clients/file_client.py,sha256=SnFrV6Bs-_ZMoZMoGviNMK1yi2xLXnTQCjm20ovecew,33729
+pyopencga/rest_clients/file_client.py,sha256=xoUE7e1oyaVhdO-ZnLEnbyUPTgyKGYhhtqXwvhkPP90,33724
 pyopencga/rest_clients/ga4gh_client.py,sha256=iU0PvOmxTbhFS-AUD6BDp41uU1BAxWJUiiv1waioX6A,3505
 pyopencga/rest_clients/individual_client.py,sha256=jYO4nHluP-gsdX7iM43qwlP9t9QIZBPiUv8sNXMOQ1Q,23224
 pyopencga/rest_clients/job_client.py,sha256=2u1fBSFb87gRsxcsF6ySQGgnKSJLCiaczrxUQ_iAesQ,19810
-pyopencga/rest_clients/meta_client.py,sha256=1vNVtM6HpF_FkoQnFX7QGZJCJZVL0P2kOIBoPVrUl-w,2256
+pyopencga/rest_clients/meta_client.py,sha256=xVN3YcOrCmoq2Nsx2vZoA-K40phHyWWAlR-GS-h1T0w,2307
 pyopencga/rest_clients/organization_client.py,sha256=wOv7E5kStrRt8FoqA4Xo6q0eVenf367vhfa5KZ8hQCs,9464
 pyopencga/rest_clients/project_client.py,sha256=XuajvAQB9qUGhYRpmZxA1bBkgDkgyS78w-BUepIidtI,5211
 pyopencga/rest_clients/sample_client.py,sha256=UAUDzZCfIaSKCwaIGe11ek11w_tMcxGqNaRXTYwbjMg,23620
@@ -43,11 +43,11 @@ pyxetabase/rest_clients/cvdb_client.py,sha256=V7ny5nQEeJqsbALAe7JLyoV6b0XyYF7c9l
 pyxetabase/rest_clients/disease_panel_client.py,sha256=GAYRyAfoB_VunskXOhAzMNbsrFupb6M2QbRK3x1Y5vo,18513
 pyxetabase/rest_clients/family_client.py,sha256=n-kyjnrV09R50JxyiHjFs8rCQkOKFU0Z1O7oVYuaKxg,18586
 pyxetabase/rest_clients/federation_client.py,sha256=p5B8dRq9gj-fdgIfIPhmkT7mNU65cRFtH06kaGtmbWE,5066
-pyxetabase/rest_clients/file_client.py,sha256=fwTWnZtprYNDUBvRetLLe6PTBxW_M8LxN6OlAMGWXC4,33730
+pyxetabase/rest_clients/file_client.py,sha256=7mGziH-_IuHuhs7B2yOby3s969qHqDMNLAOpDdnE3J0,33725
 pyxetabase/rest_clients/ga4gh_client.py,sha256=fPnmiblnfpz_zcZPJblGqOFksrdiF3MUer3fv2nwQwk,3506
 pyxetabase/rest_clients/individual_client.py,sha256=C59zr_t7tTxNR7ZBeAPY6fyYl59fE7KY05MaLyXWmXw,23225
 pyxetabase/rest_clients/job_client.py,sha256=amoBW3SL56l6sAPCUB55rZhLR8DcdIIfb5ymOZ9NkLQ,19811
-pyxetabase/rest_clients/meta_client.py,sha256=zFA4QpwNuMm5sgJbF6VP6OcG4lUlSHah91ncc724bxU,2257
+pyxetabase/rest_clients/meta_client.py,sha256=uExVRfdSKiXteLYe7R3q9x3zCp9mMWWMyPDU56TtoDo,2308
 pyxetabase/rest_clients/organization_client.py,sha256=tnwUTCqJoGiKXMQLMv4ymHA16JxnR5iL2SMLaJDBRs8,9465
 pyxetabase/rest_clients/project_client.py,sha256=M8naPsj47z2ylTrJNU_JyHReKzXrB038PoEtKKrtxmc,5212
 pyxetabase/rest_clients/sample_client.py,sha256=VOsPAhw9HwaEHzzw_5gcVQ1v2xSesvzN3TO4z2opaNo,23621
@@ -56,8 +56,8 @@ pyxetabase/rest_clients/user_client.py,sha256=frA7-rMii-yoRyca_Orkj1T80OeEe-zCdW
 pyxetabase/rest_clients/variant_client.py,sha256=mmBuVE0JBThJr5zsLGci5nykNcCKyfZXRKl-h3HT9PA,75436
 pyxetabase/rest_clients/variant_operation_client.py,sha256=oN7AEQzAkrmLQLbw86CODCEnR5xM6UkqrdN-9WPO_rM,36911
 pyxetabase/rest_clients/workflow_client.py,sha256=QYnyI17aNCjq-uXlguaSj78F0xupeWwmf8uYK1Y5tf4,12482
-pyxetabase-3.1.0.dev15.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
-pyxetabase-3.1.0.dev15.dist-info/METADATA,sha256=hXiOCOSXp-3QeqtqEGz31-lKdm-iUa4YE1jl0P5WLoM,5540
-pyxetabase-3.1.0.dev15.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-pyxetabase-3.1.0.dev15.dist-info/top_level.txt,sha256=0m5pDpBX-lM8QpPl7bTpTQAm4kgu2-nr-pcaEu4Tn_8,11
-pyxetabase-3.1.0.dev15.dist-info/RECORD,,
+pyxetabase-3.1.0.dev17.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
+pyxetabase-3.1.0.dev17.dist-info/METADATA,sha256=LE3zMXboO3L_8_vUSy-iclIh-Y03PArvUWBRvx1r3R8,5540
+pyxetabase-3.1.0.dev17.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+pyxetabase-3.1.0.dev17.dist-info/top_level.txt,sha256=0m5pDpBX-lM8QpPl7bTpTQAm4kgu2-nr-pcaEu4Tn_8,11
+pyxetabase-3.1.0.dev17.dist-info/RECORD,,