pyxetabase 3.1.0.dev0__py3-none-any.whl → 3.1.0.dev2__py3-none-any.whl

pyopencga/rest_clients/meta_client.py

@@ -60,7 +60,8 @@ class Meta(_ParentRestClient):
         Opencga openapi json.
         PATH: /{apiVersion}/meta/openapi
 
-        :param str token: List of categories to get API from.
+        :param str environment: Environment of the app.
+        :param str host: Opencga host without environment.
         """
 
         return self._get(category='meta', resource='openapi', **options)

pyopencga/rest_clients/organization_client.py

@@ -113,6 +113,16 @@ class Organization(_ParentRestClient):
 
         return self._post(category='organizations', resource='update', subcategory='notes', second_query_id=id, data=data, **options)
 
+    def reset_user_password(self, **options):
+        """
+        Reset user's password.
+        PATH: /{apiVersion}/organizations/user/password/reset
+
+        :param str user_id: User whose password needs to be reset.
+        """
+
+        return self._post(category='organizations', resource='reset', subcategory='user/password', **options)
+
     def user_update_status(self, user, data=None, **options):
         """
         Update the user status.

pyopencga/rest_clients/user_client.py

@@ -165,7 +165,7 @@ class User(_ParentRestClient):
 
     def reset_password(self, user, **options):
         """
-        Reset password.
+        [DEPRECATED].
         PATH: /{apiVersion}/users/{user}/password/reset
 
         :param str user: User ID. (REQUIRED)

pyxetabase/rest_clients/cvdb_client.py

@@ -19,6 +19,33 @@ class CVDB(_ParentRestClient):
     def __init__(self, configuration, token=None, login_handler=None, *args, **kwargs):
         super(CVDB, self).__init__(configuration, token, login_handler, *args, **kwargs)
 
+    def update_acl(self, data=None, **options):
+        """
+        Update the set of permissions granted in CVDB for the OpenCGA users
+            that have access to the clinical analyses.
+        PATH: /{apiVersion}/analysis/cvdb/acl/update
+
+        :param dict data: Parameters for the ACL updating task
+            (cvdb-acl-update). (REQUIRED)
+        :param str study: Study [[organization@]project:]study where study and
+            project can be either the ID or UUID.
+        :param str job_id: Job ID. It must be a unique string within the
+            study. An ID will be autogenerated automatically if not provided.
+        :param str job_description: Job description.
+        :param str job_depends_on: Comma separated list of existing job IDs
+            the job will depend on.
+        :param str job_tags: Job tags.
+        :param str job_scheduled_start_time: Time when the job is scheduled to
+            start.
+        :param str job_priority: Priority of the job.
+        :param bool job_dry_run: Flag indicating that the job will be executed
+            in dry-run mode. In this mode, OpenCGA will validate that all
+            parameters and prerequisites are correctly set for successful
+            execution, but the job will not actually run.
+        """
+
+        return self._post(category='analysis', resource='update', subcategory='cvdb/acl', data=data, **options)
+
     def aggregate_analysis(self, **options):
         """
         Calculate and fetch clinical analysis aggregation stats.

pyxetabase/rest_clients/meta_client.py

@@ -60,7 +60,8 @@ class Meta(_ParentRestClient):
         Opencga openapi json.
         PATH: /{apiVersion}/meta/openapi
 
-        :param str token: List of categories to get API from.
+        :param str environment: Environment of the app.
+        :param str host: Opencga host without environment.
         """
 
         return self._get(category='meta', resource='openapi', **options)

pyxetabase/rest_clients/organization_client.py

@@ -113,6 +113,16 @@ class Organization(_ParentRestClient):
 
         return self._post(category='organizations', resource='update', subcategory='notes', second_query_id=id, data=data, **options)
 
+    def reset_user_password(self, **options):
+        """
+        Reset user's password.
+        PATH: /{apiVersion}/organizations/user/password/reset
+
+        :param str user_id: User whose password needs to be reset.
+        """
+
+        return self._post(category='organizations', resource='reset', subcategory='user/password', **options)
+
     def user_update_status(self, user, data=None, **options):
         """
         Update the user status.

pyxetabase/rest_clients/user_client.py

@@ -185,7 +185,7 @@ class User(_ParentRestClient):
 
     def reset_password(self, user, **options):
         """
-        Reset password.
+        [DEPRECATED].
         PATH: /{apiVersion}/users/{user}/password/reset
 
         :param str user: User ID. (REQUIRED)

{pyxetabase-3.1.0.dev0.dist-info → pyxetabase-3.1.0.dev2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyxetabase
-Version: 3.1.0.dev0
+Version: 3.1.0.dev2
 Summary: A REST client for OpenCGA enterprise REST web services
 Author: Daniel Perez-Gil
 Author-email: daniel.perez@zettagenomics.com

{pyxetabase-3.1.0.dev0.dist-info → pyxetabase-3.1.0.dev2.dist-info}/RECORD

@@ -17,12 +17,12 @@ pyopencga/rest_clients/file_client.py,sha256=xoUE7e1oyaVhdO-ZnLEnbyUPTgyKGYhhtqX
 pyopencga/rest_clients/ga4gh_client.py,sha256=iU0PvOmxTbhFS-AUD6BDp41uU1BAxWJUiiv1waioX6A,3505
 pyopencga/rest_clients/individual_client.py,sha256=jYO4nHluP-gsdX7iM43qwlP9t9QIZBPiUv8sNXMOQ1Q,23224
 pyopencga/rest_clients/job_client.py,sha256=2u1fBSFb87gRsxcsF6ySQGgnKSJLCiaczrxUQ_iAesQ,19810
-pyopencga/rest_clients/meta_client.py,sha256=g3eNMWawjYNwpgjy7es0WHygsUjK3aBcCgLE-JTIfYA,2203
-pyopencga/rest_clients/organization_client.py,sha256=MLd87hHp2WDhsh2b3k29r-DlS2i71Nv4EU9Jy6QyuJQ,9121
+pyopencga/rest_clients/meta_client.py,sha256=1vNVtM6HpF_FkoQnFX7QGZJCJZVL0P2kOIBoPVrUl-w,2256
+pyopencga/rest_clients/organization_client.py,sha256=wOv7E5kStrRt8FoqA4Xo6q0eVenf367vhfa5KZ8hQCs,9464
 pyopencga/rest_clients/project_client.py,sha256=XuajvAQB9qUGhYRpmZxA1bBkgDkgyS78w-BUepIidtI,5211
 pyopencga/rest_clients/sample_client.py,sha256=UAUDzZCfIaSKCwaIGe11ek11w_tMcxGqNaRXTYwbjMg,23620
 pyopencga/rest_clients/study_client.py,sha256=cbShzD4GtZ6kchUHdhPGfKX1YxytsJGZ8ifttzeXoCQ,20248
-pyopencga/rest_clients/user_client.py,sha256=3Tzqw3d7bGvrbtqeLqImY5UQBxo6d5yyLNWCTVZ_duU,7149
+pyopencga/rest_clients/user_client.py,sha256=XS4FDLuPaDt9VKHlLIYixvqqLRfBEZ9pwzblUM3GDfQ,7147
 pyopencga/rest_clients/variant_client.py,sha256=qao-KWLjp04mDN3q7tQYsJzsQpxMaMvMzE8zAp8t7pg,75435
 pyopencga/rest_clients/variant_operation_client.py,sha256=HYBQOSwXKdFTDbaxZfA4hUa66yKCfwCT7r272hLdQLc,36910
 pyopencga/rest_clients/workflow_client.py,sha256=TN_x3CpC-GIojfsJNZmwPMCeXMUSPxKIas2PnNN18H4,12481
@@ -39,7 +39,7 @@ pyxetabase/rest_clients/admin_client.py,sha256=f2q7-ZPu5Ee4LvGBV0PYh-Af_dlt6V0yA
 pyxetabase/rest_clients/alignment_client.py,sha256=srY1fmjMZCPWlbqhrD2gYVhS2zu7fgPx61tZOqQi4Wc,18509
 pyxetabase/rest_clients/clinical_analysis_client.py,sha256=j2LmLT8wg3C9srRMB2mksEVFnqN22Anb7HxZCbdF50c,69126
 pyxetabase/rest_clients/cohort_client.py,sha256=D-su-AFOziztVMI-oAcr5G2Uq_psbLV8Wt0bqZ7zZgI,16324
-pyxetabase/rest_clients/cvdb_client.py,sha256=Acr7gmupxCv_0xhTfu_SsIGIu7f3EEO5P0t6k_wVEJw,141705
+pyxetabase/rest_clients/cvdb_client.py,sha256=V7ny5nQEeJqsbALAe7JLyoV6b0XyYF7c9lsn-qK-i8o,143102
 pyxetabase/rest_clients/disease_panel_client.py,sha256=GAYRyAfoB_VunskXOhAzMNbsrFupb6M2QbRK3x1Y5vo,18513
 pyxetabase/rest_clients/family_client.py,sha256=n-kyjnrV09R50JxyiHjFs8rCQkOKFU0Z1O7oVYuaKxg,18586
 pyxetabase/rest_clients/federation_client.py,sha256=p5B8dRq9gj-fdgIfIPhmkT7mNU65cRFtH06kaGtmbWE,5066
@@ -47,17 +47,17 @@ pyxetabase/rest_clients/file_client.py,sha256=7mGziH-_IuHuhs7B2yOby3s969qHqDMNLA
 pyxetabase/rest_clients/ga4gh_client.py,sha256=fPnmiblnfpz_zcZPJblGqOFksrdiF3MUer3fv2nwQwk,3506
 pyxetabase/rest_clients/individual_client.py,sha256=C59zr_t7tTxNR7ZBeAPY6fyYl59fE7KY05MaLyXWmXw,23225
 pyxetabase/rest_clients/job_client.py,sha256=amoBW3SL56l6sAPCUB55rZhLR8DcdIIfb5ymOZ9NkLQ,19811
-pyxetabase/rest_clients/meta_client.py,sha256=QhQebF3VyxU1kgWEfeV7niaXG7oxThgxT9wZeS4gEes,2204
-pyxetabase/rest_clients/organization_client.py,sha256=fcK911NZHJE5fmSV19H2XNnwE192v-Oj5Cl4GwyAu60,9122
+pyxetabase/rest_clients/meta_client.py,sha256=zFA4QpwNuMm5sgJbF6VP6OcG4lUlSHah91ncc724bxU,2257
+pyxetabase/rest_clients/organization_client.py,sha256=tnwUTCqJoGiKXMQLMv4ymHA16JxnR5iL2SMLaJDBRs8,9465
 pyxetabase/rest_clients/project_client.py,sha256=M8naPsj47z2ylTrJNU_JyHReKzXrB038PoEtKKrtxmc,5212
 pyxetabase/rest_clients/sample_client.py,sha256=VOsPAhw9HwaEHzzw_5gcVQ1v2xSesvzN3TO4z2opaNo,23621
 pyxetabase/rest_clients/study_client.py,sha256=hZ1GAYMrAhfjD_PqSXLwYRFpPFewxoLI_GhaSrzVyuE,20249
-pyxetabase/rest_clients/user_client.py,sha256=SiwEr-bCO3eunryTLW6zVv0I7KPs9dCNhgImpP4KE4A,7685
+pyxetabase/rest_clients/user_client.py,sha256=frA7-rMii-yoRyca_Orkj1T80OeEe-zCdWZCHKn1sio,7683
 pyxetabase/rest_clients/variant_client.py,sha256=mmBuVE0JBThJr5zsLGci5nykNcCKyfZXRKl-h3HT9PA,75436
 pyxetabase/rest_clients/variant_operation_client.py,sha256=oN7AEQzAkrmLQLbw86CODCEnR5xM6UkqrdN-9WPO_rM,36911
 pyxetabase/rest_clients/workflow_client.py,sha256=QYnyI17aNCjq-uXlguaSj78F0xupeWwmf8uYK1Y5tf4,12482
-pyxetabase-3.1.0.dev0.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
-pyxetabase-3.1.0.dev0.dist-info/METADATA,sha256=D8CT9j1hyu3Ln_GB1CYbd9ILQPbDD_qZOS9GfbeORNs,5539
-pyxetabase-3.1.0.dev0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-pyxetabase-3.1.0.dev0.dist-info/top_level.txt,sha256=0m5pDpBX-lM8QpPl7bTpTQAm4kgu2-nr-pcaEu4Tn_8,11
-pyxetabase-3.1.0.dev0.dist-info/RECORD,,
+pyxetabase-3.1.0.dev2.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
+pyxetabase-3.1.0.dev2.dist-info/METADATA,sha256=t7_jkJfj-goZGT2QxmWtZKmpE0xWX5up8_AimiFAyWE,5539
+pyxetabase-3.1.0.dev2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+pyxetabase-3.1.0.dev2.dist-info/top_level.txt,sha256=0m5pDpBX-lM8QpPl7bTpTQAm4kgu2-nr-pcaEu4Tn_8,11
+pyxetabase-3.1.0.dev2.dist-info/RECORD,,