pywombat 1.0.1__py3-none-any.whl → 1.0.2__py3-none-any.whl

pywombat/cli.py

@@ -1198,15 +1198,18 @@ def read_pedigree(pedigree_path: Path) -> pl.DataFrame:
     pedigree_df = df.select(select_cols)
 
     # Replace 0 and -9 with null (indicating no parent)
+    # Explicit cast to Utf8 ensures type is preserved even when all values become null
     pedigree_df = pedigree_df.with_columns(
         [
             pl.when(pl.col("father_id").cast(pl.Utf8).is_in(["0", "-9"]))
             .then(None)
             .otherwise(pl.col("father_id"))
+            .cast(pl.Utf8)
             .alias("father_id"),
             pl.when(pl.col("mother_id").cast(pl.Utf8).is_in(["0", "-9"]))
             .then(None)
             .otherwise(pl.col("mother_id"))
+            .cast(pl.Utf8)
             .alias("mother_id"),
         ]
     )

{pywombat-1.0.1.dist-info → pywombat-1.0.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pywombat
-Version: 1.0.1
+Version: 1.0.2
 Summary: A CLI tool for processing and filtering bcftools tabulated TSV files with pedigree support
 Project-URL: Homepage, https://github.com/bourgeron-lab/pywombat
 Project-URL: Repository, https://github.com/bourgeron-lab/pywombat

pywombat-1.0.2.dist-info/RECORD

@@ -0,0 +1,6 @@
+pywombat/__init__.py,sha256=iIPN9vJtsIUhl_DiKNnknxCamLinfayodLLFK8y-aJg,54
+pywombat/cli.py,sha256=76pVpYYyl9rCm6TCq86j7xAqEC9pOvjiWCX9MmrBB_o,74994
+pywombat-1.0.2.dist-info/METADATA,sha256=slcagFwSvA99GVzKLRZggFPy5dkLEh_09O3dIB8Hfr4,17168
+pywombat-1.0.2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+pywombat-1.0.2.dist-info/entry_points.txt,sha256=Vt7U2ypbiEgCBlEV71ZPk287H5_HKmPBT4iBu6duEcE,44
+pywombat-1.0.2.dist-info/RECORD,,

pywombat-1.0.1.dist-info/RECORD

@@ -1,6 +0,0 @@
-pywombat/__init__.py,sha256=iIPN9vJtsIUhl_DiKNnknxCamLinfayodLLFK8y-aJg,54
-pywombat/cli.py,sha256=eaChYSTxEc3lXxVRKe3X8bRGKmgxUE0Vuy9Cr5wPTi4,74853
-pywombat-1.0.1.dist-info/METADATA,sha256=G0xdJEOwfB-J1ZOy6qphijM4JBygZppMeRs0J8mzSj0,17168
-pywombat-1.0.1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-pywombat-1.0.1.dist-info/entry_points.txt,sha256=Vt7U2ypbiEgCBlEV71ZPk287H5_HKmPBT4iBu6duEcE,44
-pywombat-1.0.1.dist-info/RECORD,,