pyvale 2025.4.1__py3-none-any.whl → 2025.5.1__py3-none-any.whl

pyvale/optimcheckfuncs.py

@@ -1,153 +0,0 @@
-"""
-OPTIMISATION TEST FUNCTIONS - N DIMS
-https://gist.github.com/denis-bz/da697d8bc74fae4598bf
-https://www.sfu.ca/~ssurjano/optimization.html
-https://en.wikipedia.org/wiki/Test_functions_for_optimization
-"""
-from typing import Callable,Any
-import numpy as np
-import matplotlib.pyplot as plt
-from pyvale.visualopts import PlotOptsGeneral
-
-
-def ackley(x: np.ndarray,
-             a: float = 20.0,
-             b: float = 0.2,
-             c: float = 2*np.pi) -> np.ndarray:
-    """ACKLEY
-    Dimension: N
-    Local Minima: many
-    Global Minimum: f(x) = 0 @ (0,0,....,0)
-    Eval: [-32.768,32.768] or smaller
-    """
-    n = x.shape[1]
-    sum1 = np.sum(x**2,axis=1)
-    sum2 = np.sum(np.cos(c*x),axis=1)
-    f =  -a*np.exp(-b*np.sqrt(sum1/n)) - np.exp(sum2/n) + a + np.exp(1)
-    return f
-
-
-def dixonprice(x: np.ndarray) -> np.ndarray:
-    """DIXON-PRICE
-    Dimension: N
-    Local Minima: Large valley
-    Global Minimum: f(x) = 0 @ x_i = 2^-((2^i-2)/2^i) for i = 1,...,d
-    Eval: [-10.0,10.0] or smaller
-    """
-    n = x.shape[1]
-    j = np.arange( 2, n+1 )
-    x2 = 2 * x**2
-    f = np.sum( j * (x2[:,1:] - x[:,:-1]) **2, axis=1) + (x[:,0] - 1) **2
-    return f
-
-
-def griewank(x: np.ndarray, div: float = 4000.0) -> np.ndarray:
-    """GRIEWANK
-    Dimension: N
-    Local Minima: many
-    Global Minimum: f(x) = 0 @ (0,0,....,0)
-    Eval: [-600,600] or smaller
-    """
-    n = x.shape[1]
-    j = np.arange( 1., n+1 )
-    sum1 = np.sum( x**2, axis=1 )
-    p = np.prod( np.cos( x / np.sqrt(j) ), axis=1)
-    f = sum1/div - p + 1
-    return f
-
-
-def rastrigin(x: np.ndarray, a: float = 10) -> np.ndarray:
-    """RASTRIGIN
-    Dimension: N
-    Local Minima: many
-    Global Minimum: f(x) = 0 @ (0,0,....,0)
-    Eval: [-5.12,5.12] or smaller
-    """
-    n = x.shape[1]
-    sum1 = np.sum(x**2 - a*np.cos(2*np.pi*x),axis=1)
-    f = a*n + sum1
-    return f
-
-
-def rosenbrock(x: np.ndarray, a: float = 100) -> float:
-    """ROSENBROCK
-    Dimension: N
-    Local Minima: Large valley
-    Global minimum: at (x,y) = (1,1) where f(x,y)=0
-    Eval: [-5.0,10.0] or smaller
-    """
-    x0 = x[:,:-1] # x_(i) ... to n-1
-    x1 = x[:,1:]  # x_(i+1) ... to n-1
-    f = a*np.sum((x1-x0**2)**2,axis=1) + np.sum((1-x0)**2, axis=1)
-    return f
-
-
-def sphere(x: np.ndarray) -> np.ndarray:
-    """SPHERE
-    Dimension: N
-    Local Minima: none
-    Global minimum: f(x) = 0 @ (0,0,....,0)
-    Eval: [-inf,inf] or smaller
-    """
-    f = np.sum(x**2,axis=1)
-    return f
-
-
-def get_mesh_x_2d(xlim1: tuple[float,float],
-                  xlim2: tuple[float,float],
-                  n: int = 100):
-    xv1 = np.linspace(xlim1[0],xlim1[1],n)
-    xv2 = np.linspace(xlim2[0],xlim2[1],n)
-    (xm1,xm2) = np.meshgrid(xv1,xv2)
-    return (xm1,xm2)
-
-
-def get_flat_x_2d(xlim1: tuple[float,float],
-                  xlim2: tuple[float,float],
-                  n: int = 100) -> np.ndarray:
-
-    (xm1,xm2) = get_mesh_x_2d(xlim1,xlim2,n)
-    xf1 = xm1.flatten()
-    xf2 = xm2.flatten()
-    return np.column_stack((xf1,xf2))
-
-
-def f_mesh_2d(fun: Callable,
-              xlim1: tuple[float,float],
-              xlim2: tuple[float,float],
-              n: int = 100) -> np.ndarray:
-
-    (xm1,_) = get_mesh_x_2d(xlim1,xlim2,n)
-    xf = get_flat_x_2d(xlim1,xlim2,n)
-    f_flat = fun(xf)
-    f_mesh = f_flat.reshape(xm1.shape)
-
-    return f_mesh
-
-
-def plot_fun_2d(tStr: str,
-                fun: Callable,
-                xlim1: tuple[float,float],
-                xlim2: tuple[float,float],
-                n: int =100) -> tuple[Any,Any]:
-
-    (xm1,xm2) = get_mesh_x_2d(xlim1,xlim2,n)
-    f_mesh = f_mesh_2d(fun,xlim1,xlim2,n)
-    # Plot the function
-    pp = PlotOptsGeneral()
-    fig, ax = plt.subplots(figsize=pp.single_fig_size_square,
-                           layout="constrained")
-    fig.set_dpi(pp.resolution)
-
-    plt.contourf(xm1, xm2, f_mesh, 20, cmap=pp.cmap_seq)
-
-    plt.colorbar()
-    plt.title(tStr,fontsize=pp.font_head_size,fontname=pp.font_name)
-    plt.xlabel("x1",fontsize=pp.font_ax_size,fontname=pp.font_name)
-    plt.ylabel("x2",fontsize=pp.font_ax_size,fontname=pp.font_name)
-
-    #plt.show()
-    #plt.savefig(save_path+save_name, dpi=pp.resolution, format="png", bbox_inches="tight")
-    return fig,ax
-
-

pyvale/visualsimplotter.py

@@ -1,182 +0,0 @@
-# ================================================================================
-# pyvale: the python validation engine
-# License: MIT
-# Copyright (C) 2025 The Computer Aided Validation Team
-# ================================================================================
-
-# import vtk #NOTE: has to be here to fix latex bug in pyvista/vtk
-# See: https://github.com/pyvista/pyvista/discussions/2928
-#NOTE: causes output to console to be suppressed unfortunately
-import pyvista as pv
-
-import mooseherder as mh
-
-from pyvale.sensorarraypoint import SensorArrayPoint
-from pyvale.fieldconverter import simdata_to_pyvista
-from pyvale.visualopts import (VisOptsSimSensors,VisOptsImageSave)
-from pyvale.visualtools import (create_pv_plotter,
-                                     get_colour_lims,
-                                     save_image)
-
-
-#TODO: Docstrings
-
-def add_sim_field(pv_plot: pv.Plotter,
-                  sensor_array: SensorArrayPoint,
-                  component: str,
-                  time_step: int,
-                  vis_opts: VisOptsSimSensors,
-                  ) -> tuple[pv.Plotter,pv.UnstructuredGrid]:
-
-    sim_vis = sensor_array.field.get_visualiser()
-    sim_data = sensor_array.field.get_sim_data()
-    sim_vis[component] = sim_data.node_vars[component][:,time_step]
-    comp_ind = sensor_array.field.get_component_index(component)
-
-    scalar_bar_args = {"title":sensor_array.descriptor.create_label(comp_ind),
-                        "vertical":vis_opts.colour_bar_vertical,
-                        "title_font_size":vis_opts.colour_bar_font_size,
-                        "label_font_size":vis_opts.colour_bar_font_size}
-
-    pv_plot.add_mesh(sim_vis,
-                     scalars=component,
-                     label="sim-data",
-                     show_edges=vis_opts.show_edges,
-                     show_scalar_bar=vis_opts.colour_bar_show,
-                     scalar_bar_args=scalar_bar_args,
-                     lighting=False,
-                     clim=vis_opts.colour_bar_lims)
-
-    if vis_opts.time_label_show:
-        pv_plot.add_text(f"Time: {sim_data.time[time_step]} " + \
-                            f"{sensor_array.descriptor.time_units}",
-                            position=vis_opts.time_label_position,
-                            font_size=vis_opts.time_label_font_size,
-                            name='time-label')
-
-    return (pv_plot,sim_vis)
-
-
-def add_sensor_points_nom(pv_plot: pv.Plotter,
-                          sensor_array: SensorArrayPoint,
-                          vis_opts: VisOptsSimSensors,
-                          ) -> pv.Plotter:
-
-    vis_sens_nominal = pv.PolyData(sensor_array.sensor_data.positions)
-    vis_sens_nominal["labels"] = sensor_array.descriptor.create_sensor_tags(
-    sensor_array.get_measurement_shape()[0])
-
-    # Add points to show sensor locations
-    pv_plot.add_point_labels(vis_sens_nominal,"labels",
-                            font_size=vis_opts.sens_label_font_size,
-                            shape_color=vis_opts.sens_label_colour,
-                            point_color=vis_opts.sens_colour_nom,
-                            render_points_as_spheres=True,
-                            point_size=vis_opts.sens_point_size,
-                            always_visible=True)
-
-    return pv_plot
-
-
-def add_sensor_points_pert(pv_plot: pv.Plotter,
-                           sensor_array: SensorArrayPoint,
-                           vis_opts: VisOptsSimSensors,
-                           ) -> pv.Plotter:
-
-    sens_data_perturbed = sensor_array.get_sensor_data_perturbed()
-
-    if sens_data_perturbed is not None and vis_opts.show_perturbed_pos:
-        vis_sens_perturbed = pv.PolyData(sens_data_perturbed.positions)
-        vis_sens_perturbed["labels"] = ["",]*sensor_array.get_measurement_shape()[0]
-
-        pv_plot.add_point_labels(vis_sens_perturbed,"labels",
-                                font_size=vis_opts.sens_label_font_size,
-                                shape_color=vis_opts.sens_label_colour,
-                                point_color=vis_opts.sens_colour_pert,
-                                render_points_as_spheres=True,
-                                point_size=vis_opts.sens_point_size,
-                                always_visible=True)
-
-    return pv_plot
-
-
-def plot_sim_mesh(sim_data: mh.SimData,
-                  elem_dims: int,
-                  vis_opts: VisOptsSimSensors | None = None,
-                  ) -> pv.Plotter:
-
-    if vis_opts is None:
-        vis_opts = VisOptsSimSensors()
-
-    (_,sim_vis) = simdata_to_pyvista(sim_data=sim_data,
-                                    components=None,
-                                    elem_dims=elem_dims)
-
-    pv_plot = create_pv_plotter(vis_opts)
-    pv_plot.add_mesh(sim_vis,
-                     label="sim-data",
-                     show_edges=vis_opts.show_edges,
-                     lighting=False)
-    return pv_plot
-
-
-def plot_sim_data(sim_data: mh.SimData,
-                  component: str,
-                  elem_dims: int,
-                  time_step: int = -1,
-                  vis_opts: VisOptsSimSensors | None = None
-                  ) -> pv.Plotter:
-
-    if vis_opts is None:
-        vis_opts = VisOptsSimSensors()
-
-    (_,sim_vis) = simdata_to_pyvista(sim_data,
-                                              (component,),
-                                              elem_dims)
-
-    sim_vis[component] = sim_data.node_vars[component][:,time_step]
-
-    pv_plot = create_pv_plotter(vis_opts)
-    pv_plot.add_mesh(sim_vis,
-                     scalars=component,
-                     label="sim-data",
-                     show_edges=vis_opts.show_edges,
-                     show_scalar_bar=vis_opts.colour_bar_show,
-                     lighting=False,
-                     clim=vis_opts.colour_bar_lims)
-
-    return pv_plot
-
-
-def plot_point_sensors_on_sim(sensor_array: SensorArrayPoint,
-                              component: str,
-                              time_step: int = -1,
-                              vis_opts: VisOptsSimSensors | None = None,
-                              image_save_opts: VisOptsImageSave | None = None,
-                              ) -> pv.Plotter:
-
-    if vis_opts is None:
-        vis_opts = VisOptsSimSensors()
-
-    sim_data = sensor_array.field.get_sim_data()
-    vis_opts.colour_bar_lims = get_colour_lims(
-        sim_data.node_vars[component][:,time_step],
-        vis_opts.colour_bar_lims)
-
-    pv_plot = create_pv_plotter(vis_opts)
-
-    pv_plot = add_sensor_points_pert(pv_plot,sensor_array,vis_opts)
-    pv_plot = add_sensor_points_nom(pv_plot,sensor_array,vis_opts)
-    (pv_plot,_) = add_sim_field(pv_plot,
-                                sensor_array,
-                                component,
-                                time_step,
-                                vis_opts)
-
-    pv_plot.camera_position = vis_opts.camera_position
-
-    if image_save_opts is not None:
-        save_image(pv_plot,image_save_opts)
-
-    return pv_plot
-

pyvale-2025.4.1.dist-info/RECORD

@@ -1,163 +0,0 @@
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