pytme 0.3b0.post1__cp311-cp311-macosx_15_0_arm64.whl → 0.3.1.dev20250731__cp311-cp311-macosx_15_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. pytme-0.3.1.dev20250731.data/scripts/estimate_ram_usage.py +97 -0
  2. {pytme-0.3b0.post1.data → pytme-0.3.1.dev20250731.data}/scripts/match_template.py +30 -41
  3. {pytme-0.3b0.post1.data → pytme-0.3.1.dev20250731.data}/scripts/postprocess.py +35 -21
  4. {pytme-0.3b0.post1.data → pytme-0.3.1.dev20250731.data}/scripts/preprocessor_gui.py +96 -24
  5. pytme-0.3.1.dev20250731.data/scripts/pytme_runner.py +1223 -0
  6. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/METADATA +5 -7
  7. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/RECORD +59 -49
  8. scripts/estimate_ram_usage.py +97 -0
  9. scripts/extract_candidates.py +118 -99
  10. scripts/match_template.py +30 -41
  11. scripts/match_template_devel.py +1339 -0
  12. scripts/postprocess.py +35 -21
  13. scripts/preprocessor_gui.py +96 -24
  14. scripts/pytme_runner.py +644 -190
  15. scripts/refine_matches.py +158 -390
  16. tests/data/.DS_Store +0 -0
  17. tests/data/Blurring/.DS_Store +0 -0
  18. tests/data/Maps/.DS_Store +0 -0
  19. tests/data/Raw/.DS_Store +0 -0
  20. tests/data/Structures/.DS_Store +0 -0
  21. tests/preprocessing/test_utils.py +18 -0
  22. tests/test_analyzer.py +2 -3
  23. tests/test_backends.py +3 -9
  24. tests/test_density.py +0 -1
  25. tests/test_extensions.py +0 -1
  26. tests/test_matching_utils.py +10 -60
  27. tests/test_orientations.py +0 -12
  28. tests/test_rotations.py +1 -1
  29. tme/__version__.py +1 -1
  30. tme/analyzer/_utils.py +4 -4
  31. tme/analyzer/aggregation.py +35 -15
  32. tme/analyzer/peaks.py +11 -10
  33. tme/backends/_jax_utils.py +64 -18
  34. tme/backends/_numpyfftw_utils.py +270 -0
  35. tme/backends/cupy_backend.py +16 -55
  36. tme/backends/jax_backend.py +79 -40
  37. tme/backends/matching_backend.py +17 -51
  38. tme/backends/mlx_backend.py +1 -27
  39. tme/backends/npfftw_backend.py +71 -65
  40. tme/backends/pytorch_backend.py +1 -26
  41. tme/density.py +58 -5
  42. tme/extensions.cpython-311-darwin.so +0 -0
  43. tme/filters/ctf.py +22 -21
  44. tme/filters/wedge.py +10 -7
  45. tme/mask.py +341 -0
  46. tme/matching_data.py +31 -19
  47. tme/matching_exhaustive.py +37 -47
  48. tme/matching_optimization.py +2 -1
  49. tme/matching_scores.py +229 -411
  50. tme/matching_utils.py +73 -422
  51. tme/memory.py +1 -1
  52. tme/orientations.py +24 -13
  53. tme/rotations.py +1 -1
  54. pytme-0.3b0.post1.data/scripts/pytme_runner.py +0 -769
  55. {pytme-0.3b0.post1.data → pytme-0.3.1.dev20250731.data}/scripts/estimate_memory_usage.py +0 -0
  56. {pytme-0.3b0.post1.data → pytme-0.3.1.dev20250731.data}/scripts/preprocess.py +0 -0
  57. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/WHEEL +0 -0
  58. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/entry_points.txt +0 -0
  59. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/licenses/LICENSE +0 -0
  60. {pytme-0.3b0.post1.dist-info → pytme-0.3.1.dev20250731.dist-info}/top_level.txt +0 -0