pytme 0.2.1__cp311-cp311-macosx_14_0_arm64.whl → 0.2.3__cp311-cp311-macosx_14_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. {pytme-0.2.1.data → pytme-0.2.3.data}/scripts/match_template.py +219 -216
  2. {pytme-0.2.1.data → pytme-0.2.3.data}/scripts/postprocess.py +86 -54
  3. pytme-0.2.3.data/scripts/preprocess.py +132 -0
  4. {pytme-0.2.1.data → pytme-0.2.3.data}/scripts/preprocessor_gui.py +181 -94
  5. pytme-0.2.3.dist-info/METADATA +92 -0
  6. pytme-0.2.3.dist-info/RECORD +75 -0
  7. {pytme-0.2.1.dist-info → pytme-0.2.3.dist-info}/WHEEL +1 -1
  8. pytme-0.2.1.data/scripts/preprocess.py → scripts/eval.py +1 -1
  9. scripts/extract_candidates.py +20 -13
  10. scripts/match_template.py +219 -216
  11. scripts/match_template_filters.py +154 -95
  12. scripts/postprocess.py +86 -54
  13. scripts/preprocess.py +95 -56
  14. scripts/preprocessor_gui.py +181 -94
  15. scripts/refine_matches.py +265 -61
  16. tme/__init__.py +0 -1
  17. tme/__version__.py +1 -1
  18. tme/analyzer.py +458 -813
  19. tme/backends/__init__.py +40 -11
  20. tme/backends/_jax_utils.py +187 -0
  21. tme/backends/cupy_backend.py +109 -226
  22. tme/backends/jax_backend.py +230 -152
  23. tme/backends/matching_backend.py +445 -384
  24. tme/backends/mlx_backend.py +32 -59
  25. tme/backends/npfftw_backend.py +240 -507
  26. tme/backends/pytorch_backend.py +30 -151
  27. tme/density.py +248 -371
  28. tme/extensions.cpython-311-darwin.so +0 -0
  29. tme/matching_data.py +328 -284
  30. tme/matching_exhaustive.py +195 -1499
  31. tme/matching_optimization.py +143 -106
  32. tme/matching_scores.py +887 -0
  33. tme/matching_utils.py +287 -388
  34. tme/memory.py +377 -0
  35. tme/orientations.py +78 -21
  36. tme/parser.py +3 -4
  37. tme/preprocessing/_utils.py +61 -32
  38. tme/preprocessing/composable_filter.py +7 -4
  39. tme/preprocessing/compose.py +7 -3
  40. tme/preprocessing/frequency_filters.py +49 -39
  41. tme/preprocessing/tilt_series.py +44 -72
  42. tme/preprocessor.py +560 -526
  43. tme/structure.py +491 -188
  44. tme/types.py +5 -3
  45. pytme-0.2.1.dist-info/METADATA +0 -73
  46. pytme-0.2.1.dist-info/RECORD +0 -73
  47. tme/helpers.py +0 -881
  48. tme/matching_constrained.py +0 -195
  49. {pytme-0.2.1.data → pytme-0.2.3.data}/scripts/estimate_ram_usage.py +0 -0
  50. {pytme-0.2.1.dist-info → pytme-0.2.3.dist-info}/LICENSE +0 -0
  51. {pytme-0.2.1.dist-info → pytme-0.2.3.dist-info}/entry_points.txt +0 -0
  52. {pytme-0.2.1.dist-info → pytme-0.2.3.dist-info}/top_level.txt +0 -0
tme/extensions.cpython-311-darwin.so CHANGED
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