pytme 0.2.1__cp311-cp311-macosx_14_0_arm64.whl → 0.2.2__cp311-cp311-macosx_14_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (49) hide show
  1. {pytme-0.2.1.data → pytme-0.2.2.data}/scripts/match_template.py +147 -93
  2. {pytme-0.2.1.data → pytme-0.2.2.data}/scripts/postprocess.py +67 -26
  3. {pytme-0.2.1.data → pytme-0.2.2.data}/scripts/preprocessor_gui.py +175 -85
  4. pytme-0.2.2.dist-info/METADATA +91 -0
  5. pytme-0.2.2.dist-info/RECORD +74 -0
  6. {pytme-0.2.1.dist-info → pytme-0.2.2.dist-info}/WHEEL +1 -1
  7. scripts/extract_candidates.py +20 -13
  8. scripts/match_template.py +147 -93
  9. scripts/match_template_filters.py +154 -95
  10. scripts/postprocess.py +67 -26
  11. scripts/preprocessor_gui.py +175 -85
  12. scripts/refine_matches.py +265 -61
  13. tme/__init__.py +0 -1
  14. tme/__version__.py +1 -1
  15. tme/analyzer.py +451 -809
  16. tme/backends/__init__.py +40 -11
  17. tme/backends/_jax_utils.py +185 -0
  18. tme/backends/cupy_backend.py +111 -223
  19. tme/backends/jax_backend.py +214 -150
  20. tme/backends/matching_backend.py +445 -384
  21. tme/backends/mlx_backend.py +32 -59
  22. tme/backends/npfftw_backend.py +239 -507
  23. tme/backends/pytorch_backend.py +21 -145
  24. tme/density.py +233 -363
  25. tme/extensions.cpython-311-darwin.so +0 -0
  26. tme/matching_data.py +322 -285
  27. tme/matching_exhaustive.py +172 -1493
  28. tme/matching_optimization.py +143 -106
  29. tme/matching_scores.py +884 -0
  30. tme/matching_utils.py +280 -386
  31. tme/memory.py +377 -0
  32. tme/orientations.py +52 -12
  33. tme/parser.py +3 -4
  34. tme/preprocessing/_utils.py +61 -32
  35. tme/preprocessing/compose.py +7 -3
  36. tme/preprocessing/frequency_filters.py +49 -39
  37. tme/preprocessing/tilt_series.py +34 -40
  38. tme/preprocessor.py +560 -526
  39. tme/structure.py +491 -188
  40. tme/types.py +5 -3
  41. pytme-0.2.1.dist-info/METADATA +0 -73
  42. pytme-0.2.1.dist-info/RECORD +0 -73
  43. tme/helpers.py +0 -881
  44. tme/matching_constrained.py +0 -195
  45. {pytme-0.2.1.data → pytme-0.2.2.data}/scripts/estimate_ram_usage.py +0 -0
  46. {pytme-0.2.1.data → pytme-0.2.2.data}/scripts/preprocess.py +0 -0
  47. {pytme-0.2.1.dist-info → pytme-0.2.2.dist-info}/LICENSE +0 -0
  48. {pytme-0.2.1.dist-info → pytme-0.2.2.dist-info}/entry_points.txt +0 -0
  49. {pytme-0.2.1.dist-info → pytme-0.2.2.dist-info}/top_level.txt +0 -0
tme/extensions.cpython-311-darwin.so CHANGED
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