pytme 0.2.0b0__cp311-cp311-macosx_14_0_arm64.whl → 0.2.2__cp311-cp311-macosx_14_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. pytme-0.2.2.data/scripts/match_template.py +1187 -0
  2. {pytme-0.2.0b0.data → pytme-0.2.2.data}/scripts/postprocess.py +170 -71
  3. {pytme-0.2.0b0.data → pytme-0.2.2.data}/scripts/preprocessor_gui.py +179 -86
  4. pytme-0.2.2.dist-info/METADATA +91 -0
  5. pytme-0.2.2.dist-info/RECORD +74 -0
  6. {pytme-0.2.0b0.dist-info → pytme-0.2.2.dist-info}/WHEEL +1 -1
  7. scripts/extract_candidates.py +126 -87
  8. scripts/match_template.py +596 -209
  9. scripts/match_template_filters.py +571 -223
  10. scripts/postprocess.py +170 -71
  11. scripts/preprocessor_gui.py +179 -86
  12. scripts/refine_matches.py +567 -159
  13. tme/__init__.py +0 -1
  14. tme/__version__.py +1 -1
  15. tme/analyzer.py +627 -855
  16. tme/backends/__init__.py +41 -11
  17. tme/backends/_jax_utils.py +185 -0
  18. tme/backends/cupy_backend.py +120 -225
  19. tme/backends/jax_backend.py +282 -0
  20. tme/backends/matching_backend.py +464 -388
  21. tme/backends/mlx_backend.py +45 -68
  22. tme/backends/npfftw_backend.py +256 -514
  23. tme/backends/pytorch_backend.py +41 -154
  24. tme/density.py +312 -421
  25. tme/extensions.cpython-311-darwin.so +0 -0
  26. tme/matching_data.py +366 -303
  27. tme/matching_exhaustive.py +279 -1521
  28. tme/matching_optimization.py +234 -129
  29. tme/matching_scores.py +884 -0
  30. tme/matching_utils.py +281 -387
  31. tme/memory.py +377 -0
  32. tme/orientations.py +226 -66
  33. tme/parser.py +3 -4
  34. tme/preprocessing/__init__.py +2 -0
  35. tme/preprocessing/_utils.py +217 -0
  36. tme/preprocessing/composable_filter.py +31 -0
  37. tme/preprocessing/compose.py +55 -0
  38. tme/preprocessing/frequency_filters.py +388 -0
  39. tme/preprocessing/tilt_series.py +1011 -0
  40. tme/preprocessor.py +574 -530
  41. tme/structure.py +495 -189
  42. tme/types.py +5 -3
  43. pytme-0.2.0b0.data/scripts/match_template.py +0 -800
  44. pytme-0.2.0b0.dist-info/METADATA +0 -73
  45. pytme-0.2.0b0.dist-info/RECORD +0 -66
  46. tme/helpers.py +0 -881
  47. tme/matching_constrained.py +0 -195
  48. {pytme-0.2.0b0.data → pytme-0.2.2.data}/scripts/estimate_ram_usage.py +0 -0
  49. {pytme-0.2.0b0.data → pytme-0.2.2.data}/scripts/preprocess.py +0 -0
  50. {pytme-0.2.0b0.dist-info → pytme-0.2.2.dist-info}/LICENSE +0 -0
  51. {pytme-0.2.0b0.dist-info → pytme-0.2.2.dist-info}/entry_points.txt +0 -0
  52. {pytme-0.2.0b0.dist-info → pytme-0.2.2.dist-info}/top_level.txt +0 -0
tme/__init__.py CHANGED
@@ -4,4 +4,3 @@ from .density import Density
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  from .preprocessor import Preprocessor
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  from .structure import Structure
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  from .orientations import Orientations
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- from .matching_optimization import FitRefinement
tme/__version__.py CHANGED
@@ -1 +1 @@
1
- __version__ = "0.2.0b"
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+ __version__ = "0.2.2"