pytme 0.1.9__cp311-cp311-macosx_14_0_arm64.whl → 0.2.0__cp311-cp311-macosx_14_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (42) hide show
  1. pytme-0.2.0.data/scripts/match_template.py +1019 -0
  2. pytme-0.2.0.data/scripts/postprocess.py +570 -0
  3. {pytme-0.1.9.data → pytme-0.2.0.data}/scripts/preprocessor_gui.py +244 -60
  4. {pytme-0.1.9.dist-info → pytme-0.2.0.dist-info}/METADATA +3 -1
  5. pytme-0.2.0.dist-info/RECORD +72 -0
  6. {pytme-0.1.9.dist-info → pytme-0.2.0.dist-info}/WHEEL +1 -1
  7. scripts/extract_candidates.py +218 -0
  8. scripts/match_template.py +459 -218
  9. pytme-0.1.9.data/scripts/match_template.py → scripts/match_template_filters.py +459 -218
  10. scripts/postprocess.py +380 -435
  11. scripts/preprocessor_gui.py +244 -60
  12. scripts/refine_matches.py +218 -0
  13. tme/__init__.py +2 -1
  14. tme/__version__.py +1 -1
  15. tme/analyzer.py +533 -78
  16. tme/backends/cupy_backend.py +80 -15
  17. tme/backends/npfftw_backend.py +35 -6
  18. tme/backends/pytorch_backend.py +15 -7
  19. tme/density.py +173 -78
  20. tme/extensions.cpython-311-darwin.so +0 -0
  21. tme/matching_constrained.py +195 -0
  22. tme/matching_data.py +76 -33
  23. tme/matching_exhaustive.py +354 -225
  24. tme/matching_memory.py +1 -0
  25. tme/matching_optimization.py +753 -649
  26. tme/matching_utils.py +152 -8
  27. tme/orientations.py +561 -0
  28. tme/preprocessing/__init__.py +2 -0
  29. tme/preprocessing/_utils.py +176 -0
  30. tme/preprocessing/composable_filter.py +30 -0
  31. tme/preprocessing/compose.py +52 -0
  32. tme/preprocessing/frequency_filters.py +322 -0
  33. tme/preprocessing/tilt_series.py +967 -0
  34. tme/preprocessor.py +35 -25
  35. tme/structure.py +2 -37
  36. pytme-0.1.9.data/scripts/postprocess.py +0 -625
  37. pytme-0.1.9.dist-info/RECORD +0 -61
  38. {pytme-0.1.9.data → pytme-0.2.0.data}/scripts/estimate_ram_usage.py +0 -0
  39. {pytme-0.1.9.data → pytme-0.2.0.data}/scripts/preprocess.py +0 -0
  40. {pytme-0.1.9.dist-info → pytme-0.2.0.dist-info}/LICENSE +0 -0
  41. {pytme-0.1.9.dist-info → pytme-0.2.0.dist-info}/entry_points.txt +0 -0
  42. {pytme-0.1.9.dist-info → pytme-0.2.0.dist-info}/top_level.txt +0 -0
tme/matching_memory.py CHANGED
@@ -276,6 +276,7 @@ MATCHING_MEMORY_REGISTRY = {
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  "MCC": MCCMemoryUsage,
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  "FLCSphericalMask": FLCSphericalMaskMemoryUsage,
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  "FLC": FLCMemoryUsage,
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+ "FLC2": FLCMemoryUsage,
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  "MaxScoreOverRotations": MaxScoreOverRotationsMemoryUsage,
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  "PeakCallerMaximumFilter": PeakCallerMaximumFilterMemoryUsage,
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  "cupy": CupyBackendMemoryUsage,