python-microscopy 26.7.9__cp313-cp313-macosx_26_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1269) hide show
  1. PYME/Acquire/ActionManager.py +450 -0
  2. PYME/Acquire/ExecTools.py +235 -0
  3. PYME/Acquire/Hardware/AAOptoelectronics/MDS.py +175 -0
  4. PYME/Acquire/Hardware/AAOptoelectronics/__init__.py +0 -0
  5. PYME/Acquire/Hardware/ARCoptix/__init__.py +0 -0
  6. PYME/Acquire/Hardware/ARCoptix/lcdriver.py +149 -0
  7. PYME/Acquire/Hardware/ARCoptix/lcserver32.py +123 -0
  8. PYME/Acquire/Hardware/AndorIXon/AndorCam.py +1095 -0
  9. PYME/Acquire/Hardware/AndorIXon/AndorControlFrame.py +312 -0
  10. PYME/Acquire/Hardware/AndorIXon/AndorIXon.py +737 -0
  11. PYME/Acquire/Hardware/AndorIXon/__init__.py +27 -0
  12. PYME/Acquire/Hardware/AndorNeo/AndorNeo.py +644 -0
  13. PYME/Acquire/Hardware/AndorNeo/AndorNeoControlFrame.py +161 -0
  14. PYME/Acquire/Hardware/AndorNeo/AndorZyla.py +761 -0
  15. PYME/Acquire/Hardware/AndorNeo/SDK3.py +307 -0
  16. PYME/Acquire/Hardware/AndorNeo/SDK3Cam.py +171 -0
  17. PYME/Acquire/Hardware/AndorNeo/ZylaControlPanel.py +105 -0
  18. PYME/Acquire/Hardware/AndorNeo/__init__.py +22 -0
  19. PYME/Acquire/Hardware/AndorNeo/parseAtdebug.py +46 -0
  20. PYME/Acquire/Hardware/AndorNeo/plotTimings.py +73 -0
  21. PYME/Acquire/Hardware/AndorNeo/testNeo.py +62 -0
  22. PYME/Acquire/Hardware/Camera.py +1249 -0
  23. PYME/Acquire/Hardware/CameraSkeleton.py +642 -0
  24. PYME/Acquire/Hardware/Coherent/OBIS.py +147 -0
  25. PYME/Acquire/Hardware/Coherent/Sapphire.py +162 -0
  26. PYME/Acquire/Hardware/Coherent/__init__.py +0 -0
  27. PYME/Acquire/Hardware/DMDGui.py +198 -0
  28. PYME/Acquire/Hardware/DigiData/DigiData.py +95 -0
  29. PYME/Acquire/Hardware/DigiData/DigiDataClient.py +30 -0
  30. PYME/Acquire/Hardware/DigiData/RemoteDigiData.py +51 -0
  31. PYME/Acquire/Hardware/DigiData/__init__.py +24 -0
  32. PYME/Acquire/Hardware/DigiData/axDD132x.py +348 -0
  33. PYME/Acquire/Hardware/EMCCDTheory.py +41 -0
  34. PYME/Acquire/Hardware/ExciterWheel.py +167 -0
  35. PYME/Acquire/Hardware/FilterWheel.py +184 -0
  36. PYME/Acquire/Hardware/FocCorr.py +106 -0
  37. PYME/Acquire/Hardware/FocCorrR.py +196 -0
  38. PYME/Acquire/Hardware/FrFilter.py +51 -0
  39. PYME/Acquire/Hardware/GCS/GCS_DLL.py +370 -0
  40. PYME/Acquire/Hardware/GCS/__init__.py +0 -0
  41. PYME/Acquire/Hardware/GCS/gcs.py +210 -0
  42. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuDCAM.py +662 -0
  43. PYME/Acquire/Hardware/HamamatsuDCAM/HamamatsuORCA.py +602 -0
  44. PYME/Acquire/Hardware/HamamatsuDCAM/Hamamatsu_control_panel.py +54 -0
  45. PYME/Acquire/Hardware/HamamatsuDCAM/__init__.py +23 -0
  46. PYME/Acquire/Hardware/LaserControlFrame.py +160 -0
  47. PYME/Acquire/Hardware/MPBCommunications/MPBCW.py +132 -0
  48. PYME/Acquire/Hardware/MPBCommunications/__init__.py +0 -0
  49. PYME/Acquire/Hardware/Mercury/Mercury.py +269 -0
  50. PYME/Acquire/Hardware/Mercury/PI_Mercury_GCS_DLL.py +857 -0
  51. PYME/Acquire/Hardware/Mercury/__init__.py +22 -0
  52. PYME/Acquire/Hardware/Mercury/mercuryStepper.py +203 -0
  53. PYME/Acquire/Hardware/Mercury/mercuryStepperGCS.py +281 -0
  54. PYME/Acquire/Hardware/NikonTE2000.py +68 -0
  55. PYME/Acquire/Hardware/NikonTi.py +214 -0
  56. PYME/Acquire/Hardware/NikonTiGUI.py +81 -0
  57. PYME/Acquire/Hardware/OrielCornerstone.py +125 -0
  58. PYME/Acquire/Hardware/PM100USB.py +51 -0
  59. PYME/Acquire/Hardware/Piezos/__init__.py +22 -0
  60. PYME/Acquire/Hardware/Piezos/base_piezo.py +108 -0
  61. PYME/Acquire/Hardware/Piezos/offsetPiezo.py +162 -0
  62. PYME/Acquire/Hardware/Piezos/offsetPiezoREST.py +308 -0
  63. PYME/Acquire/Hardware/Piezos/piezo_c867.py +486 -0
  64. PYME/Acquire/Hardware/Piezos/piezo_e255.py +68 -0
  65. PYME/Acquire/Hardware/Piezos/piezo_e662.py +61 -0
  66. PYME/Acquire/Hardware/Piezos/piezo_e709.py +434 -0
  67. PYME/Acquire/Hardware/Piezos/piezo_e816.py +452 -0
  68. PYME/Acquire/Hardware/Piezos/piezo_e816_corr.py +70 -0
  69. PYME/Acquire/Hardware/Piezos/piezo_e816_dll.py +518 -0
  70. PYME/Acquire/Hardware/Piezos/piezo_e816b.py +70 -0
  71. PYME/Acquire/Hardware/Piezos/piezo_pipython_gcs.py +560 -0
  72. PYME/Acquire/Hardware/Piezos/piezo_test.py +55 -0
  73. PYME/Acquire/Hardware/Simulator/EmpiricalHist.py +273 -0
  74. PYME/Acquire/Hardware/Simulator/__init__.py +22 -0
  75. PYME/Acquire/Hardware/Simulator/dSimControl.py +961 -0
  76. PYME/Acquire/Hardware/Simulator/fakeCam.py +651 -0
  77. PYME/Acquire/Hardware/Simulator/fakePiezo.py +95 -0
  78. PYME/Acquire/Hardware/Simulator/fluor.py +336 -0
  79. PYME/Acquire/Hardware/Simulator/illuminate.cpython-313-darwin.so +0 -0
  80. PYME/Acquire/Hardware/Simulator/illuminate.pyx +93 -0
  81. PYME/Acquire/Hardware/Simulator/lasersliders.py +90 -0
  82. PYME/Acquire/Hardware/Simulator/rend_im.py +446 -0
  83. PYME/Acquire/Hardware/Simulator/setup.py +69 -0
  84. PYME/Acquire/Hardware/Simulator/simcontrol.py +348 -0
  85. PYME/Acquire/Hardware/Simulator/simui_wx.py +794 -0
  86. PYME/Acquire/Hardware/Tango/__init__.py +0 -0
  87. PYME/Acquire/Hardware/Tango/marzhauser_tango.py +583 -0
  88. PYME/Acquire/Hardware/TiLightCrafter.py +388 -0
  89. PYME/Acquire/Hardware/__init__.py +22 -0
  90. PYME/Acquire/Hardware/aotf.py +271 -0
  91. PYME/Acquire/Hardware/arclampshutterpanel.py +71 -0
  92. PYME/Acquire/Hardware/cameraSoftwareBuffer.py +215 -0
  93. PYME/Acquire/Hardware/camera_noise.py +270 -0
  94. PYME/Acquire/Hardware/ccdAdjPanel.py +188 -0
  95. PYME/Acquire/Hardware/ccdCalibrator.py +161 -0
  96. PYME/Acquire/Hardware/cobaltLaser.py +108 -0
  97. PYME/Acquire/Hardware/cobaltLaser561.py +94 -0
  98. PYME/Acquire/Hardware/comports.py +26 -0
  99. PYME/Acquire/Hardware/driftTrackGUI.py +488 -0
  100. PYME/Acquire/Hardware/driftTracking.py +595 -0
  101. PYME/Acquire/Hardware/fakeShutters.py +52 -0
  102. PYME/Acquire/Hardware/focusKeys.py +204 -0
  103. PYME/Acquire/Hardware/focus_locks/__init__.py +0 -0
  104. PYME/Acquire/Hardware/focus_locks/reflection_focus_lock.py +684 -0
  105. PYME/Acquire/Hardware/frZStage.py +117 -0
  106. PYME/Acquire/Hardware/fw102.py +38 -0
  107. PYME/Acquire/Hardware/ids_peak_cam.py +561 -0
  108. PYME/Acquire/Hardware/ioslave.py +305 -0
  109. PYME/Acquire/Hardware/lasers.py +292 -0
  110. PYME/Acquire/Hardware/matchboxLaser.py +58 -0
  111. PYME/Acquire/Hardware/microscope_adapter.py +104 -0
  112. PYME/Acquire/Hardware/mpd_picosecond_delayer.py +395 -0
  113. PYME/Acquire/Hardware/multiview.py +287 -0
  114. PYME/Acquire/Hardware/olympusix81.py +59 -0
  115. PYME/Acquire/Hardware/pco/__init__.py +0 -0
  116. PYME/Acquire/Hardware/pco/pco_cam.py +348 -0
  117. PYME/Acquire/Hardware/pco/pco_edge_42_lt.py +34 -0
  118. PYME/Acquire/Hardware/pco/pco_sdk.py +1645 -0
  119. PYME/Acquire/Hardware/pco/pco_sdk_cam.py +518 -0
  120. PYME/Acquire/Hardware/pco/pco_sdk_cam_control_panel.py +54 -0
  121. PYME/Acquire/Hardware/phoxxLaser.py +199 -0
  122. PYME/Acquire/Hardware/phoxxLaserOLD.py +242 -0
  123. PYME/Acquire/Hardware/priorLumen.py +102 -0
  124. PYME/Acquire/Hardware/priorarclampshutter.py +52 -0
  125. PYME/Acquire/Hardware/setup.py +50 -0
  126. PYME/Acquire/Hardware/spacenav.py +148 -0
  127. PYME/Acquire/Hardware/splitter.py +394 -0
  128. PYME/Acquire/Hardware/thorlabsPiezo.py +98 -0
  129. PYME/Acquire/Hardware/thorlabs_cam.py +136 -0
  130. PYME/Acquire/Hardware/thorlabs_elliptec.py +109 -0
  131. PYME/Acquire/Hardware/thorlabs_elliptec_serial.py +166 -0
  132. PYME/Acquire/Hardware/thorlabs_mff_flipper.py +396 -0
  133. PYME/Acquire/Hardware/toptica_ibeam.py +51 -0
  134. PYME/Acquire/Hardware/uc480/AndorControlFrame.py +308 -0
  135. PYME/Acquire/Hardware/uc480/__init__.py +27 -0
  136. PYME/Acquire/Hardware/uc480/uCam480.py +695 -0
  137. PYME/Acquire/Hardware/uc480/uc480.py +189 -0
  138. PYME/Acquire/Hardware/uc480/uc480Deprecated.py +87 -0
  139. PYME/Acquire/Hardware/uc480/uc480_h.py +767 -0
  140. PYME/Acquire/Hardware/uc480/uc480_h_gen.py +62 -0
  141. PYME/Acquire/Hardware/uc480/ucCamControlFrame.py +83 -0
  142. PYME/Acquire/Hardware/ueye.py +702 -0
  143. PYME/Acquire/PYMEAcquire.py +186 -0
  144. PYME/Acquire/Protocols/DMDMFM.py +74 -0
  145. PYME/Acquire/Protocols/__init__.py +22 -0
  146. PYME/Acquire/Protocols/darkCalibrate.py +56 -0
  147. PYME/Acquire/Protocols/dual671_470.py +45 -0
  148. PYME/Acquire/Protocols/dual671_488.py +46 -0
  149. PYME/Acquire/Protocols/gainCal.py +53 -0
  150. PYME/Acquire/Protocols/htsms-cal-psf.py +32 -0
  151. PYME/Acquire/Protocols/htsms-cal-registration.py +52 -0
  152. PYME/Acquire/Protocols/htsms-flow.py +29 -0
  153. PYME/Acquire/Protocols/htsms-staggered.py +31 -0
  154. PYME/Acquire/Protocols/htsms-tile.py +68 -0
  155. PYME/Acquire/Protocols/htsms-two-color.py +29 -0
  156. PYME/Acquire/Protocols/htsms-widefield.py +32 -0
  157. PYME/Acquire/Protocols/paint671.py +61 -0
  158. PYME/Acquire/Protocols/photoconversion.py +52 -0
  159. PYME/Acquire/Protocols/photoconversion2.py +55 -0
  160. PYME/Acquire/Protocols/prebleach488.py +70 -0
  161. PYME/Acquire/Protocols/prebleach490.py +69 -0
  162. PYME/Acquire/Protocols/prebleach561.py +72 -0
  163. PYME/Acquire/Protocols/prebleach561NeomEos2.py +70 -0
  164. PYME/Acquire/Protocols/prebleach561NeomEos2ND1.py +70 -0
  165. PYME/Acquire/Protocols/prebleach642.py +70 -0
  166. PYME/Acquire/Protocols/prebleach671.py +69 -0
  167. PYME/Acquire/Protocols/prebleach671ND1.py +58 -0
  168. PYME/Acquire/Protocols/prebleach671ND2.py +57 -0
  169. PYME/Acquire/Protocols/prebleach671Neo.py +69 -0
  170. PYME/Acquire/Protocols/recover671.py +62 -0
  171. PYME/Acquire/Protocols/sequence642_488.py +85 -0
  172. PYME/Acquire/Protocols/sequence642_561.py +87 -0
  173. PYME/Acquire/Protocols/shiftfield.py +198 -0
  174. PYME/Acquire/Protocols/simul488.py +59 -0
  175. PYME/Acquire/Protocols/simul642.py +63 -0
  176. PYME/Acquire/Protocols/simul642HTSMS.py +63 -0
  177. PYME/Acquire/Protocols/simulPA.py +37 -0
  178. PYME/Acquire/Protocols/simulSIM.py +76 -0
  179. PYME/Acquire/Protocols/simulStep.py +62 -0
  180. PYME/Acquire/Protocols/spdscan.py +178 -0
  181. PYME/Acquire/Protocols/standard470.py +45 -0
  182. PYME/Acquire/Protocols/standard488.py +47 -0
  183. PYME/Acquire/Protocols/standard671.py +48 -0
  184. PYME/Acquire/Protocols/standard671_no532.py +47 -0
  185. PYME/Acquire/Protocols/standardArclamp.py +46 -0
  186. PYME/Acquire/Protocols/strip_tile.py +204 -0
  187. PYME/Acquire/Protocols/tile.py +204 -0
  188. PYME/Acquire/Protocols/tile3D.py +192 -0
  189. PYME/Acquire/Protocols/tile671.py +190 -0
  190. PYME/Acquire/Protocols/tile_triggered.py +189 -0
  191. PYME/Acquire/Scripts/init.py +232 -0
  192. PYME/Acquire/Scripts/init_N1_Ti_Exeter_ZIx.py +374 -0
  193. PYME/Acquire/Scripts/init_N2_Ti_Zyla_lasers.py +290 -0
  194. PYME/Acquire/Scripts/init_Neo.py +266 -0
  195. PYME/Acquire/Scripts/init_NeoSim.py +159 -0
  196. PYME/Acquire/Scripts/init_TIRF.py +232 -0
  197. PYME/Acquire/Scripts/init_TIRF_Neo.py +242 -0
  198. PYME/Acquire/Scripts/init_TIRF_NeoO.py +241 -0
  199. PYME/Acquire/Scripts/init_TIRF_onecam.py +233 -0
  200. PYME/Acquire/Scripts/init_Ti.py +257 -0
  201. PYME/Acquire/Scripts/init_UOA_n.py +256 -0
  202. PYME/Acquire/Scripts/init_UOA_n2.py +246 -0
  203. PYME/Acquire/Scripts/init_Y1.py +249 -0
  204. PYME/Acquire/Scripts/init_Zyla.py +260 -0
  205. PYME/Acquire/Scripts/init_drift_tracking.py +80 -0
  206. PYME/Acquire/Scripts/init_emccd_basic.py +277 -0
  207. PYME/Acquire/Scripts/init_htsms.py +277 -0
  208. PYME/Acquire/Scripts/init_htsms_focus_lock.py +132 -0
  209. PYME/Acquire/Scripts/init_micrpi.py +45 -0
  210. PYME/Acquire/Scripts/init_orca.py +70 -0
  211. PYME/Acquire/Scripts/init_pco.py +49 -0
  212. PYME/Acquire/Scripts/init_rev.py +74 -0
  213. PYME/Acquire/Scripts/init_sim100.py +169 -0
  214. PYME/Acquire/Scripts/init_sim103.py +169 -0
  215. PYME/Acquire/Scripts/init_sim2.py +211 -0
  216. PYME/Acquire/Scripts/init_sim50.py +169 -0
  217. PYME/Acquire/Scripts/init_sim75.py +169 -0
  218. PYME/Acquire/Scripts/init_sim_drift_tracking.py +166 -0
  219. PYME/Acquire/Scripts/init_sim_htsms.py +224 -0
  220. PYME/Acquire/Scripts/init_sim_htsms_n.py +233 -0
  221. PYME/Acquire/Scripts/init_sim_main.py +229 -0
  222. PYME/Acquire/Scripts/init_sim_min.py +197 -0
  223. PYME/Acquire/Scripts/init_sim_rem.py +176 -0
  224. PYME/Acquire/Scripts/init_smi1.py +110 -0
  225. PYME/Acquire/Scripts/init_spectro.py +78 -0
  226. PYME/Acquire/Scripts/init_spim.py +116 -0
  227. PYME/Acquire/Scripts/init_thorcam.py +62 -0
  228. PYME/Acquire/Scripts/init_twophoton.py +112 -0
  229. PYME/Acquire/Scripts/init_uc480.py +262 -0
  230. PYME/Acquire/Scripts/init_ueye.py +261 -0
  231. PYME/Acquire/SpoolController.py +967 -0
  232. PYME/Acquire/Utils/MultiPointScanner.py +80 -0
  233. PYME/Acquire/Utils/__init__.py +13 -0
  234. PYME/Acquire/Utils/failsafe.py +157 -0
  235. PYME/Acquire/Utils/fastTiler.py +153 -0
  236. PYME/Acquire/Utils/pointScanner.py +496 -0
  237. PYME/Acquire/Utils/sarcSpacing.py +86 -0
  238. PYME/Acquire/Utils/strip_tiler.py +93 -0
  239. PYME/Acquire/Utils/tiler.py +464 -0
  240. PYME/Acquire/Utils/vibrationAnalysis.py +65 -0
  241. PYME/Acquire/__init__.py +44 -0
  242. PYME/Acquire/acquire_app.py +14 -0
  243. PYME/Acquire/acquire_client.py +90 -0
  244. PYME/Acquire/acquire_server.py +316 -0
  245. PYME/Acquire/acquirebase.py +139 -0
  246. PYME/Acquire/acquiremainframe.py +716 -0
  247. PYME/Acquire/acquirewx.py +61 -0
  248. PYME/Acquire/acquisition_base.py +148 -0
  249. PYME/Acquire/actions.py +209 -0
  250. PYME/Acquire/autofocus.py +54 -0
  251. PYME/Acquire/eventLog.py +95 -0
  252. PYME/Acquire/event_loop.py +119 -0
  253. PYME/Acquire/frameWrangler.py +530 -0
  254. PYME/Acquire/htsms/__init__.py +8 -0
  255. PYME/Acquire/htsms/rule_ui.py +970 -0
  256. PYME/Acquire/htsms/rule_ui_v2.py +573 -0
  257. PYME/Acquire/htsms/tweeter.py +222 -0
  258. PYME/Acquire/microscope.py +1050 -0
  259. PYME/Acquire/positionTracker.py +181 -0
  260. PYME/Acquire/protocol.py +299 -0
  261. PYME/Acquire/protocol_acquisition.py +404 -0
  262. PYME/Acquire/sampleInformation.py +591 -0
  263. PYME/Acquire/sampleInformationDjangoDirect.py +446 -0
  264. PYME/Acquire/setup.py +52 -0
  265. PYME/Acquire/stackSettings.py +295 -0
  266. PYME/Acquire/stage_leveling.py +285 -0
  267. PYME/Acquire/ui/AnalysisSettingsUI.py +184 -0
  268. PYME/Acquire/ui/HDFSpoolFrame.py +584 -0
  269. PYME/Acquire/ui/__init__.py +0 -0
  270. PYME/Acquire/ui/actionUI.py +892 -0
  271. PYME/Acquire/ui/focus_lock_gui.py +149 -0
  272. PYME/Acquire/ui/intensity_trace.py +143 -0
  273. PYME/Acquire/ui/intsliders.py +223 -0
  274. PYME/Acquire/ui/lasersliders.py +329 -0
  275. PYME/Acquire/ui/mpd_picosecond_delay_panel.py +69 -0
  276. PYME/Acquire/ui/multiview_select.py +77 -0
  277. PYME/Acquire/ui/positionUI.py +519 -0
  278. PYME/Acquire/ui/preflight.py +58 -0
  279. PYME/Acquire/ui/scanner_panel.py +41 -0
  280. PYME/Acquire/ui/selectCameraPanel.py +46 -0
  281. PYME/Acquire/ui/seqdialog.py +501 -0
  282. PYME/Acquire/ui/splashScreen.py +175 -0
  283. PYME/Acquire/ui/spool_panel.py +830 -0
  284. PYME/Acquire/ui/tile_panel.py +556 -0
  285. PYME/Acquire/ui/tilesettingsui.py +91 -0
  286. PYME/Acquire/ui/voxelSizeDialog.py +149 -0
  287. PYME/Acquire/webui/__init__.py +36 -0
  288. PYME/Acquire/webui/ipy.py +361 -0
  289. PYME/Acquire/webui/static/css/pyme-bootstrap.css +9908 -0
  290. PYME/Acquire/webui/static/css/pymeacquire.css +85 -0
  291. PYME/Acquire/webui/static/js/pymeacquire.js +375 -0
  292. PYME/Acquire/webui/static/js/pzf.js +95 -0
  293. PYME/Acquire/webui/templates/PYMEAcquire.html +232 -0
  294. PYME/Acquire/webui/templates/login.html +84 -0
  295. PYME/Acquire/webui/templates/xtermpage.html +106 -0
  296. PYME/Acquire/xyztc.py +418 -0
  297. PYME/Acquire/zScanner.py +287 -0
  298. PYME/Analysis/BleachProfile/__init__.py +26 -0
  299. PYME/Analysis/BleachProfile/deMod.py +91 -0
  300. PYME/Analysis/BleachProfile/fitRecover.py +90 -0
  301. PYME/Analysis/BleachProfile/intensProf.py +519 -0
  302. PYME/Analysis/BleachProfile/kinModels.py +507 -0
  303. PYME/Analysis/BleachProfile/rawIntensity.py +227 -0
  304. PYME/Analysis/BleachProfile/rollins.py +555 -0
  305. PYME/Analysis/Colocalisation/__init__.py +27 -0
  306. PYME/Analysis/Colocalisation/colocScaleDep.py +126 -0
  307. PYME/Analysis/Colocalisation/correlationCoeffs.py +198 -0
  308. PYME/Analysis/Colocalisation/distColoc.py +110 -0
  309. PYME/Analysis/Colocalisation/edtColoc.py +191 -0
  310. PYME/Analysis/MetaData.py +278 -0
  311. PYME/Analysis/PSFEst/__init__.py +27 -0
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  982. PYME/localization/ofind_nofilt.py +128 -0
  983. PYME/localization/ofind_pri.py +478 -0
  984. PYME/localization/ofind_split.py +399 -0
  985. PYME/localization/ofind_xcorr.py +351 -0
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  987. PYME/localization/remFitBuf.py +657 -0
  988. PYME/localization/setup.py +56 -0
  989. PYME/localization/splitting.py +240 -0
  990. PYME/localization/twist.py +60 -0
  991. PYME/misc/TiSettings.py +36 -0
  992. PYME/misc/TiffImagePlugin.py +838 -0
  993. PYME/misc/VolProj.py +144 -0
  994. PYME/misc/__init__.py +25 -0
  995. PYME/misc/aligned_array.py +10 -0
  996. PYME/misc/aniso.py +29 -0
  997. PYME/misc/big_sur_fix.py +20 -0
  998. PYME/misc/check_for_updates.py +146 -0
  999. PYME/misc/colormaps.py +199 -0
  1000. PYME/misc/colorsys.py +201 -0
  1001. PYME/misc/computerName.py +33 -0
  1002. PYME/misc/coverslipGeometries.py +60 -0
  1003. PYME/misc/cython_numpy_monkey.py +40 -0
  1004. PYME/misc/depGraph.py +406 -0
  1005. PYME/misc/dirSize.py +31 -0
  1006. PYME/misc/diskCleanup.py +64 -0
  1007. PYME/misc/djangoRecarray.py +57 -0
  1008. PYME/misc/django_widgets.py +27 -0
  1009. PYME/misc/editgrid.py +101 -0
  1010. PYME/misc/eventSpy.py +122 -0
  1011. PYME/misc/exceptions.py +30 -0
  1012. PYME/misc/facsPlot.py +89 -0
  1013. PYME/misc/fbpIcons.py +90 -0
  1014. PYME/misc/fftw_compat.py +28 -0
  1015. PYME/misc/findCycles.py +91 -0
  1016. PYME/misc/fortran_interrupt_defeat.py +43 -0
  1017. PYME/misc/glassModel.py +64 -0
  1018. PYME/misc/hash32.py +41 -0
  1019. PYME/misc/hillcurve.py +88 -0
  1020. PYME/misc/hybrid_ns.py +84 -0
  1021. PYME/misc/kdFit.py +72 -0
  1022. PYME/misc/locate.py +10 -0
  1023. PYME/misc/memUsage.py +65 -0
  1024. PYME/misc/memmap.py +52 -0
  1025. PYME/misc/mock_ctypes.py +28 -0
  1026. PYME/misc/mock_traits.py +59 -0
  1027. PYME/misc/mock_traitsui.py +29 -0
  1028. PYME/misc/pyme_zeroconf.py +287 -0
  1029. PYME/misc/pyro_tracebacks.py +32 -0
  1030. PYME/misc/read_agf.py +605 -0
  1031. PYME/misc/sffake.py +16 -0
  1032. PYME/misc/snells.py +71 -0
  1033. PYME/misc/sqlite_ns.py +132 -0
  1034. PYME/misc/sqlitendarray.py +56 -0
  1035. PYME/misc/taskDef.py +44 -0
  1036. PYME/misc/tempDB.py +56 -0
  1037. PYME/misc/wxThread.py +33 -0
  1038. PYME/misc/zemax.py +259 -0
  1039. PYME/misc/zernike.py +151 -0
  1040. PYME/pyme_warnings.py +70 -0
  1041. PYME/recipes/Recipes/STEDDeconvolution.yaml +14 -0
  1042. PYME/recipes/Recipes/STEDMinistacks.yaml +15 -0
  1043. PYME/recipes/Recipes/STED_COP3.yaml +25 -0
  1044. PYME/recipes/Recipes/blobMeas.yaml +19 -0
  1045. PYME/recipes/Recipes/blobMeas2.yaml +37 -0
  1046. PYME/recipes/Recipes/blobMeasSR.yaml +66 -0
  1047. PYME/recipes/Recipes/coloc.yaml +43 -0
  1048. PYME/recipes/Recipes/coloc_roi_masked.yaml +46 -0
  1049. PYME/recipes/Recipes/multiblob.yaml +38 -0
  1050. PYME/recipes/Recipes/pre_particleTracking.yaml +30 -0
  1051. PYME/recipes/Recipes/segmentAndMeasureLoci.yaml +41 -0
  1052. PYME/recipes/__init__.py +6 -0
  1053. PYME/recipes/acquisition.py +158 -0
  1054. PYME/recipes/bakeshop.py +32 -0
  1055. PYME/recipes/bakeshop_app.py +16 -0
  1056. PYME/recipes/base.py +1389 -0
  1057. PYME/recipes/batchProcess.py +147 -0
  1058. PYME/recipes/filters.py +394 -0
  1059. PYME/recipes/fudges.py +41 -0
  1060. PYME/recipes/graphing.py +108 -0
  1061. PYME/recipes/html_recipe_editor.py +90 -0
  1062. PYME/recipes/localisations.py +1386 -0
  1063. PYME/recipes/machine_learning.py +286 -0
  1064. PYME/recipes/measurement.py +1063 -0
  1065. PYME/recipes/modules.py +50 -0
  1066. PYME/recipes/multiview.py +435 -0
  1067. PYME/recipes/output.py +667 -0
  1068. PYME/recipes/pointcloud.py +510 -0
  1069. PYME/recipes/processing.py +2954 -0
  1070. PYME/recipes/pyramid.py +206 -0
  1071. PYME/recipes/recipe.py +965 -0
  1072. PYME/recipes/recipeGui.py +1029 -0
  1073. PYME/recipes/recipeLayout.py +499 -0
  1074. PYME/recipes/runRecipe.py +140 -0
  1075. PYME/recipes/setup.py +37 -0
  1076. PYME/recipes/simulation.py +91 -0
  1077. PYME/recipes/skfilters.py +143 -0
  1078. PYME/recipes/surface_fitting.py +776 -0
  1079. PYME/recipes/tablefilters.py +275 -0
  1080. PYME/recipes/tracking.py +343 -0
  1081. PYME/recipes/traits.py +157 -0
  1082. PYME/recipes/vertical_recipe_display.py +373 -0
  1083. PYME/resources/__init__.py +23 -0
  1084. PYME/resources/config_template/distributor.yaml +14 -0
  1085. PYME/resources/config_template/nodeserver.yaml +15 -0
  1086. PYME/resources/icons/LUT.png +0 -0
  1087. PYME/resources/icons/YSM_Shield.png +0 -0
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  1092. PYME/resources/icons/logo_fmhs.png +0 -0
  1093. PYME/resources/icons/media-playback-pause.png +0 -0
  1094. PYME/resources/icons/media-playback-start.png +0 -0
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  1097. PYME/resources/icons/mesh.png +0 -0
  1098. PYME/resources/icons/mesh.svg +28 -0
  1099. PYME/resources/icons/pmacquire.icns +0 -0
  1100. PYME/resources/icons/pmacquire.ico +0 -0
  1101. PYME/resources/icons/pmanal.icns +0 -0
  1102. PYME/resources/icons/pmanal.ico +0 -0
  1103. PYME/resources/icons/pmvis.icns +0 -0
  1104. PYME/resources/icons/pmvis.ico +0 -0
  1105. PYME/resources/icons/points.png +0 -0
  1106. PYME/resources/icons/points.svg +16 -0
  1107. PYME/resources/icons/pymeLogo.png +0 -0
  1108. PYME/resources/icons/rect_select.png +0 -0
  1109. PYME/resources/icons/squiggle_select.png +0 -0
  1110. PYME/resources/icons/text3800.icns +0 -0
  1111. PYME/resources/icons/text3800.ico +0 -0
  1112. PYME/resources/icons/text3800.png +0 -0
  1113. PYME/resources/icons/text3800.tif +0 -0
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  1115. PYME/resources/icons/text5377.ico +0 -0
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  1117. PYME/resources/icons/tracks.png +0 -0
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  1124. PYME/resources/test_datasets/t_im.tif +0 -0
  1125. PYME/resources/test_datasets/test_csv.csv +4282 -0
  1126. PYME/resources/test_datasets/test_hdf.hdf +0 -0
  1127. PYME/resources/web/rule_inline.html +21 -0
  1128. PYME/resources/web/ruleserver.html +75 -0
  1129. PYME/resources/web/static/bootstrap.min.js +7 -0
  1130. PYME/resources/web/static/cluster.css +137 -0
  1131. PYME/resources/web/static/css/bootstrap-theme.css +587 -0
  1132. PYME/resources/web/static/css/bootstrap-theme.min.css +6 -0
  1133. PYME/resources/web/static/css/bootstrap.css +6757 -0
  1134. PYME/resources/web/static/css/bootstrap.min.css +6 -0
  1135. PYME/resources/web/static/css/flat_design_colors_full.css +306 -0
  1136. PYME/resources/web/static/css/recipe_editor.css +106 -0
  1137. PYME/resources/web/static/dashboard.css +106 -0
  1138. PYME/resources/web/static/fileselector.js +77 -0
  1139. PYME/resources/web/static/fonts/glyphicons-halflings-regular.eot +0 -0
  1140. PYME/resources/web/static/fonts/glyphicons-halflings-regular.svg +288 -0
  1141. PYME/resources/web/static/fonts/glyphicons-halflings-regular.ttf +0 -0
  1142. PYME/resources/web/static/fonts/glyphicons-halflings-regular.woff +0 -0
  1143. PYME/resources/web/static/fonts/glyphicons-halflings-regular.woff2 +0 -0
  1144. PYME/resources/web/static/images/osd_flat/LICENSE.txt +116 -0
  1145. PYME/resources/web/static/images/osd_flat/README.md +9 -0
  1146. PYME/resources/web/static/images/osd_flat/fullpage_grouphover.png +0 -0
  1147. PYME/resources/web/static/images/osd_flat/fullpage_hover.png +0 -0
  1148. PYME/resources/web/static/images/osd_flat/fullpage_pressed.png +0 -0
  1149. PYME/resources/web/static/images/osd_flat/fullpage_rest.png +0 -0
  1150. PYME/resources/web/static/images/osd_flat/home_grouphover.png +0 -0
  1151. PYME/resources/web/static/images/osd_flat/home_hover.png +0 -0
  1152. PYME/resources/web/static/images/osd_flat/home_pressed.png +0 -0
  1153. PYME/resources/web/static/images/osd_flat/home_rest.png +0 -0
  1154. PYME/resources/web/static/images/osd_flat/next_grouphover.png +0 -0
  1155. PYME/resources/web/static/images/osd_flat/next_hover.png +0 -0
  1156. PYME/resources/web/static/images/osd_flat/next_pressed.png +0 -0
  1157. PYME/resources/web/static/images/osd_flat/next_rest.png +0 -0
  1158. PYME/resources/web/static/images/osd_flat/previous_grouphover.png +0 -0
  1159. PYME/resources/web/static/images/osd_flat/previous_hover.png +0 -0
  1160. PYME/resources/web/static/images/osd_flat/previous_pressed.png +0 -0
  1161. PYME/resources/web/static/images/osd_flat/previous_rest.png +0 -0
  1162. PYME/resources/web/static/images/osd_flat/rotateleft_grouphover.png +0 -0
  1163. PYME/resources/web/static/images/osd_flat/rotateleft_hover.png +0 -0
  1164. PYME/resources/web/static/images/osd_flat/rotateleft_pressed.png +0 -0
  1165. PYME/resources/web/static/images/osd_flat/rotateleft_rest.png +0 -0
  1166. PYME/resources/web/static/images/osd_flat/rotateright_grouphover.png +0 -0
  1167. PYME/resources/web/static/images/osd_flat/rotateright_hover.png +0 -0
  1168. PYME/resources/web/static/images/osd_flat/rotateright_pressed.png +0 -0
  1169. PYME/resources/web/static/images/osd_flat/rotateright_rest.png +0 -0
  1170. PYME/resources/web/static/images/osd_flat/zoomin_grouphover.png +0 -0
  1171. PYME/resources/web/static/images/osd_flat/zoomin_hover.png +0 -0
  1172. PYME/resources/web/static/images/osd_flat/zoomin_pressed.png +0 -0
  1173. PYME/resources/web/static/images/osd_flat/zoomin_rest.png +0 -0
  1174. PYME/resources/web/static/images/osd_flat/zoomout_grouphover.png +0 -0
  1175. PYME/resources/web/static/images/osd_flat/zoomout_hover.png +0 -0
  1176. PYME/resources/web/static/images/osd_flat/zoomout_pressed.png +0 -0
  1177. PYME/resources/web/static/images/osd_flat/zoomout_rest.png +0 -0
  1178. PYME/resources/web/static/jigna-vue-bare.js +1395 -0
  1179. PYME/resources/web/static/jquery.min.js +2 -0
  1180. PYME/resources/web/static/jstree.min.js +6 -0
  1181. PYME/resources/web/static/openSeadragonGL.js +102 -0
  1182. PYME/resources/web/static/openseadragon-svg-overlay.js +103 -0
  1183. PYME/resources/web/static/openseadragon-viewerinputhook.min.js +6 -0
  1184. PYME/resources/web/static/openseadragon.min.js +9 -0
  1185. PYME/resources/web/static/recipe_editor.js +119 -0
  1186. PYME/resources/web/static/shaders/fragment/lut.glsl +20 -0
  1187. PYME/resources/web/static/shaders/fragment/none.glsl +17 -0
  1188. PYME/resources/web/static/shaders/fragment/outline.glsl +43 -0
  1189. PYME/resources/web/static/shaders/fragment/rect.glsl +7 -0
  1190. PYME/resources/web/static/shaders/fragment/sobel3.glsl +71 -0
  1191. PYME/resources/web/static/shaders/fragment/white.glsl +4 -0
  1192. PYME/resources/web/static/shaders/vertex/rect.glsl +22 -0
  1193. PYME/resources/web/static/shaders/vertex/square.glsl +9 -0
  1194. PYME/resources/web/static/utils.js +3 -0
  1195. PYME/resources/web/static/viaWebGL.js +217 -0
  1196. PYME/setup.py +109 -0
  1197. PYME/setup_exe.py +57 -0
  1198. PYME/simulation/__init__.py +0 -0
  1199. PYME/simulation/locify.py +319 -0
  1200. PYME/simulation/pointsets.py +279 -0
  1201. PYME/simulation/wormlike.py +99 -0
  1202. PYME/simulation/wormlike2.py +198 -0
  1203. PYME/simulation/wormlike3.py +197 -0
  1204. PYME/simulation/wormlike_curled.py +104 -0
  1205. PYME/tileviewer/__init__.py +0 -0
  1206. PYME/tileviewer/templates/roi_list.html +12 -0
  1207. PYME/tileviewer/templates/tileviewer.html +247 -0
  1208. PYME/tileviewer/tileviewer.py +207 -0
  1209. PYME/ui/AUIFrame.py +279 -0
  1210. PYME/ui/MetadataTree.py +469 -0
  1211. PYME/ui/__init__.py +4 -0
  1212. PYME/ui/about_dlg.py +29 -0
  1213. PYME/ui/autoFoldPanel.py +643 -0
  1214. PYME/ui/cascading_layout.py +45 -0
  1215. PYME/ui/crop_dialog.py +145 -0
  1216. PYME/ui/custom_traits_editors.py +504 -0
  1217. PYME/ui/editFilterDialog.py +80 -0
  1218. PYME/ui/editList.py +40 -0
  1219. PYME/ui/fastGraph.py +240 -0
  1220. PYME/ui/filterPane.py +344 -0
  1221. PYME/ui/histLimits.py +543 -0
  1222. PYME/ui/layerFoldPanel.py +232 -0
  1223. PYME/ui/manualFoldPanel.py +870 -0
  1224. PYME/ui/mytimer.py +116 -0
  1225. PYME/ui/patch_traitsui.py +151 -0
  1226. PYME/ui/progress.py +160 -0
  1227. PYME/ui/recArrayView.py +145 -0
  1228. PYME/ui/selection.py +71 -0
  1229. PYME/ui/shell.py +37 -0
  1230. PYME/ui/traitsui_constants.py +91 -0
  1231. PYME/ui/wx_compat.py +43 -0
  1232. PYME/update_version.py +159 -0
  1233. PYME/util/__init__.py +3 -0
  1234. PYME/util/authenticate.py +164 -0
  1235. PYME/util/execfile.py +21 -0
  1236. PYME/util/fProfile/__init__.py +1 -0
  1237. PYME/util/fProfile/convertProfile.py +117 -0
  1238. PYME/util/fProfile/fProfile.py +162 -0
  1239. PYME/util/fProfile/html/404.html +60 -0
  1240. PYME/util/fProfile/html/css/main.css +258 -0
  1241. PYME/util/fProfile/html/css/normalize.css +427 -0
  1242. PYME/util/fProfile/html/css/normalize.min.css +1 -0
  1243. PYME/util/fProfile/html/index.html +64 -0
  1244. PYME/util/fProfile/html/js/main.js +492 -0
  1245. PYME/util/fProfile/html/js/plugins.js +24 -0
  1246. PYME/util/fProfile/html/js/vendor/crossfilter.min.js +1 -0
  1247. PYME/util/fProfile/html/js/vendor/jquery-1.11.2.min.js +4 -0
  1248. PYME/util/fProfile/html/js/vendor/modernizr-2.8.3.min.js +4 -0
  1249. PYME/util/fProfile/html/js/vendor/tinycolor-min.js +4 -0
  1250. PYME/util/fProfile/viewProfile.py +30 -0
  1251. PYME/util/install_dependencies.py +95 -0
  1252. PYME/util/log_verbosity.py +11 -0
  1253. PYME/util/mProfile/__init__.py +1 -0
  1254. PYME/util/mProfile/colorize_db_t.py +297 -0
  1255. PYME/util/mProfile/mProfile.py +164 -0
  1256. PYME/util/mProfile/p.py +101 -0
  1257. PYME/util/mProfile/tProfile.py +165 -0
  1258. PYME/util/packageutils.py +34 -0
  1259. PYME/util/pymelauncher.py +47 -0
  1260. PYME/util/shmarray/__init__.py +0 -0
  1261. PYME/util/shmarray/shmTest.py +74 -0
  1262. PYME/util/shmarray/shmarray.py +165 -0
  1263. PYME/util/uilaunch.py +39 -0
  1264. PYME/util/webframework.py +365 -0
  1265. PYME/version.py +62 -0
  1266. python_microscopy-26.7.9.dist-info/METADATA +68 -0
  1267. python_microscopy-26.7.9.dist-info/RECORD +1269 -0
  1268. python_microscopy-26.7.9.dist-info/WHEEL +4 -0
  1269. python_microscopy-26.7.9.dist-info/entry_points.txt +18 -0
PYME/cluster/webdav.py ADDED
@@ -0,0 +1,1102 @@
1
+ # _*_ coding:utf-8 _*_
2
+
3
+ # Tiny WebDav Server for Pythonista - IOS. (Base on pandav WebDav server )
4
+ #
5
+ # (C)2013/11 By: Lai ChuJiang
6
+ #
7
+ # this code can run not just Pythonista on IOS ,also run on OSX python.
8
+ # Support Client: Windows / OSX / other Webdav client for IOS,etc : goodreader / iWorks for ios
9
+ #
10
+ # 20170907 Change Log:
11
+ # 1. Fix Coda WebDav access problem.(because Coda WebDav all xml item add xmlns="DAV:".)
12
+ #
13
+ # 2013/11 Change Log:
14
+ # 1. Combind all files to one file,so can using for Pythonista easy.
15
+ # 2. Add MKCOL(Create dir); MOVE(rename file); DELETE(delete file or dir); COPY (Copy file)
16
+ # 3. Change some decode, Now it's can support Chinese.
17
+ # 4. Pythonista(For IOS) not dircache module ,so change code,don't using this module.
18
+ # 5. change DAV version from 1 to 2, so the OSX finder can write.
19
+ # 6. for DAV version 2 support , add LOCK / UNLOCK fake support. (not real lock file)
20
+ # *** !!!! So Don't using > 1 client sametime write or delete same file. maybe lost files.
21
+ # 7. Change the do_PROPFIND module, now it's simply & right for OSX
22
+ # 8. Change the do_GET module, now support RANGE
23
+ # 9. Change the do_PUB module, add Content-Length=0 support (create empty file) ,so the OSX Finder support.
24
+ # *if not add empty file,the Finder copy files and then delete all this.
25
+ #10. Add WebDav Basic Auth function,now you can set user & passwd
26
+ # **using wdusers.conf file (just user:passwd), if not this file ,the Auth disable.
27
+ #11. Fix the broken pipe error message
28
+ #
29
+ # WebDav RFC: http://www.ics.uci.edu/~ejw/authoring/protocol/rfc2518.html
30
+ # http://restpatterns.org/HTTP_Methods
31
+ #
32
+ # Base : pandav v0.2
33
+ # Copyright (c) 2005.-2006. Ivan Voras <ivoras@gmail.com>
34
+ # Released under the Artistic License
35
+ #
36
+
37
+ #modified by D. Baddeley to use PYME Cluster IO as a backend, 2018
38
+
39
+ from http.server import HTTPServer, BaseHTTPRequestHandler
40
+ from socketserver import ThreadingMixIn
41
+ from io import StringIO
42
+ import sys,urllib,re
43
+ from urllib.parse import urlparse
44
+ from time import time, timezone, strftime, localtime, gmtime
45
+ import os, shutil, uuid, mimetypes, base64
46
+ from hashlib import md5
47
+ import socket
48
+ import ssl
49
+
50
+ import logging
51
+ logging.basicConfig(level=logging.DEBUG)
52
+ logger = logging.getLogger(__name__)
53
+
54
+ from PYME.IO import clusterIO
55
+ from PYME.IO import clusterListing
56
+
57
+ from io import BytesIO
58
+
59
+ def makedirs_safe(dir):
60
+ """
61
+ A safe wrapper for makedirs, which won't throw an error if the directory already exists. This replicates the functionality
62
+ of the exists_ok flag in the python 3 version of os.makedirs, but should work with both pytion 2 and python 3.
63
+
64
+ Parameters
65
+ ----------
66
+ dir : str, directory to be created
67
+
68
+ Returns
69
+ -------
70
+
71
+ """
72
+ import errno
73
+ try:
74
+ os.makedirs(dir)
75
+ except OSError as e:
76
+ if e.errno != errno.EEXIST:
77
+ raise
78
+
79
+ # 获取本机IP地址
80
+ def get_localip():
81
+ try:
82
+ gAdd = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
83
+ gAdd.connect(('www.bing.com', 80))
84
+ return gAdd.getsockname()[0]
85
+ except:
86
+ return '127.0.0.1'
87
+
88
+ class Member:
89
+ M_MEMBER = 1
90
+ M_COLLECTION = 2
91
+ def getProperties(self):
92
+ return {}
93
+
94
+ class Collection(Member):
95
+ def __init__(self, name):
96
+ self.name = name
97
+ def getMembers(self):
98
+ return []
99
+
100
+ class FileMember(Member):
101
+ def __init__(self, name, parent):
102
+ self.name = name
103
+ self.parent = parent
104
+ self.name = name
105
+ self.fsname = parent.fsname + name # e.g. '/var/www/mysite/some.txt'
106
+ self.virname = parent.virname + name # e.g. '/mysite/some.txt'
107
+ self.type = Member.M_MEMBER
108
+
109
+ def __str__(self):
110
+ return "%s -> %s" % (self.virname, self.fsname)
111
+
112
+ def getProperties(self):
113
+ """Return dictionary with WebDAV properties. Values shold be
114
+ formatted according to the WebDAV specs."""
115
+ st = clusterIO.stat(self.fsname)
116
+ p = {}
117
+ p['creationdate'] = unixdate2iso8601(st.st_ctime)
118
+ p['getlastmodified'] = unixdate2httpdate(st.st_mtime)
119
+ p['displayname'] = self.name
120
+ p['getetag'] = md5.new(self.fsname).hexdigest()
121
+ if self.type == Member.M_MEMBER:
122
+ p['getcontentlength'] = st.st_size
123
+ p['getcontenttype'], z = mimetypes.guess_type(self.name)
124
+ p['getcontentlanguage'] = None
125
+ else: # Member.M_COLLECTION
126
+ p['resourcetype'] = '<D:collection/>'
127
+ if self.name[0] == ".":
128
+ p['ishidden'] = 1
129
+ if True:# not os.access(self.fsname, os.W_OK):
130
+ p['isreadonly'] = 1
131
+ if self.name == '/':
132
+ p['isroot'] = 1
133
+ return p
134
+
135
+ def sendData(self, wfile,bpoint=0,epoint=0):
136
+ """Send the file to the client. Literally."""
137
+ data = clusterIO.get_file(self.fsname)
138
+ f_size = len(data)
139
+ #st = clusterIO.stat(self.fsname)
140
+ #with open(self.fsname, 'rb') as f:
141
+ f = BytesIO(data) #TODO - does this make sense?
142
+ writ = 0
143
+ # for send Range xxx-xxx
144
+ if bpoint>0 and bpoint<f_size:
145
+ f.seek(bpoint)
146
+
147
+ if epoint>bpoint:
148
+ if epoint<=f_size:
149
+ rsize = epoint - bpoint + 1
150
+ else:
151
+ rsize = f_size - bpoint
152
+ else:
153
+ rsize = f_size
154
+
155
+
156
+ while writ < rsize:
157
+ if (rsize - writ) < 65536:
158
+ buf = f.read(rsize)
159
+ else:
160
+ buf = f.read(65536)
161
+ if not buf:
162
+ break
163
+ writ += len(buf)
164
+ wfile.write(buf)
165
+
166
+ class DummyFileMember(FileMember):
167
+ def getProperties(self):
168
+ p = {}
169
+ p['creationdate'] = unixdate2iso8601(time())
170
+ p['getlastmodified'] = unixdate2httpdate(time())
171
+ p['displayname'] = self.name
172
+ p['getetag'] = md5.new(self.fsname).hexdigest()
173
+ if self.type == Member.M_MEMBER:
174
+ p['getcontentlength'] = 0
175
+ p['getcontenttype'], z = mimetypes.guess_type(self.name)
176
+ p['getcontentlanguage'] = None
177
+ else: # Member.M_COLLECTION
178
+ p['resourcetype'] = '<D:collection/>'
179
+ if self.name[0] == ".":
180
+ p['ishidden'] = 1
181
+ if True:# not os.access(self.fsname, os.W_OK):
182
+ p['isreadonly'] = 1
183
+ if self.name == '/':
184
+ p['isroot'] = 1
185
+ return p
186
+
187
+
188
+ class DirCollection(FileMember, Collection):
189
+ COLLECTION_MIME_TYPE = 'httpd/unix-directory' # application/x-collection ?
190
+ def __init__(self, fsdir, virdir, parent=None):
191
+ if not clusterIO.exists(fsdir):
192
+ raise RuntimeError("Local directory (fsdir) not found: " + fsdir)
193
+ self.fsname = fsdir
194
+ self.name = virdir
195
+ if self.fsname[-1] != os.sep:
196
+ if self.fsname[-1] == '/': # fixup win/dos/mac separators
197
+ self.fsname = self.fsname[:-1] + os.sep
198
+ else:
199
+ self.fsname += os.sep
200
+ self.virname = virdir
201
+ if self.virname[-1] != '/':
202
+ self.virname += '/'
203
+ self.parent = parent
204
+ self.type = Member.M_COLLECTION
205
+
206
+ def getProperties(self):
207
+ p = FileMember.getProperties(self) # inherit file properties
208
+ p['iscollection'] = 1
209
+ p['getcontenttype'] = DirCollection.COLLECTION_MIME_TYPE
210
+ p['getcontentlength'] = 0
211
+ return p
212
+
213
+ def getMembers(self):
214
+ """Get immediate members of this collection."""
215
+ l = clusterIO.listdirectory(self.fsname) # obtain a copy of dirlist
216
+ #tcount=0
217
+ #for tmpi in l:
218
+ # if os.path.isfile(self.fsname+tmpi) == False:
219
+ # l[tcount]=l[tcount]+'/'
220
+ # tcount += 1
221
+
222
+
223
+ r = []
224
+ for fn, f_info in l.items():
225
+ if f_info.type == clusterListing.FILETYPE_NORMAL:
226
+ m = FileMember(fn, self) # Member is a file
227
+ else:
228
+ m = DirCollection(self.fsname + fn, self.virname + fn, self) # Member is a collection
229
+ r.append(m)
230
+
231
+ for d_ in _temporary_directories:
232
+ real_dirs = l.keys()
233
+ if d_ in real_dirs or (d_ + '/') in real_dirs:
234
+ _temporary_directories.remove(d_)
235
+
236
+ if d_.startswith(self.fsname):
237
+ d__ = d_[len(self.fsname):]
238
+ if len(d__.lstrip('/').rstrip('/').split('/')) == 1:
239
+ #temporary directory is at this level
240
+ r.append(TempDirCollection(d_, self.virname + d__))
241
+
242
+ for f_ in _dummy_files:
243
+ if f_.startswith(self.fsname):
244
+ f__ = f_[len(self.fsname):]
245
+ if len(f__.lstrip('/').rstrip('/').split('/')) == 1:
246
+ #temporary directory is at this level
247
+ r.append(DummyFileMember(f__.lstrip('/'), self))
248
+
249
+ #print _temporary_directories
250
+ #print [str(r_) for r_ in r]
251
+
252
+ return r
253
+
254
+ # Return WebDav Root Dir info
255
+ def rootdir(self):
256
+ return self.fsname
257
+
258
+ def findMember(self, name):
259
+ """Search for a particular member."""
260
+ #l = os.listdir(self.fsname) # obtain a copy of dirlist
261
+ l = clusterIO.listdirectory(self.fsname)
262
+ # tcount=0
263
+ # for tmpi in l:
264
+ # if os.path.isfile(self.fsname+tmpi) == False:
265
+ # l[tcount]=l[tcount]+'/'
266
+ # tcount += 1
267
+
268
+
269
+ # if name in l:
270
+ # if name[-1] != '/':
271
+ # return FileMember(name, self)
272
+ # else:
273
+ # return DirCollection(self.fsname + name, self.virname + name, self)
274
+
275
+ try:
276
+ info = l[name]
277
+ if info.type == clusterListing.FILETYPE_NORMAL:
278
+ return FileMember(name, self)
279
+ else:
280
+ return DirCollection(self.fsname + name, self.virname + name, self)
281
+ except KeyError:
282
+ pass
283
+
284
+ fname = (self.fsname.rstrip('/') + '/' + name.lstrip('/'))
285
+ if fname in _dummy_files:
286
+ return DummyFileMember(name, self)
287
+
288
+ name += '/'
289
+ #print (self.fsname + name), _temporary_directories
290
+ if name in l.keys():
291
+ return DirCollection(self.fsname + name, self.virname + name, self)
292
+ elif (self.fsname + name).rstrip('/') in _temporary_directories:
293
+ return TempDirCollection(self.fsname + name, self.virname + name, self)
294
+
295
+ def sendData(self, wfile):
296
+ """Send "file" to the client. Since this is a directory, build some arbitrary HTML."""
297
+ memb = self.getMembers()
298
+ data = '<html><head><title>%s</title></head><body>' % self.virname
299
+ data += '<table><tr><th>Name</th><th>Size</th><th>Timestamp</th></tr>'
300
+ for m in memb:
301
+ p = m.getProperties()
302
+ if 'getcontentlength' in p:
303
+ p['size'] = int(p['getcontentlength'])
304
+ p['timestamp'] = p['getlastmodified']
305
+ else:
306
+ p['size'] = 0
307
+ p['timestamp'] = '-DIR-'
308
+ data += '<tr><td>%s</td><td>%d</td><td>%s</td></tr>' % (p['displayname'], p['size'], p['timestamp'])
309
+ data += '</table></body></html>'
310
+ wfile.write(data)
311
+
312
+ def recvMember(self, rfile, name, size, req):
313
+ """Receive (save) a member file"""
314
+
315
+ fname = os.path.join(self.fsname, urllib.unquote(name))
316
+
317
+ if size==0:
318
+ _dummy_files.append(fname)
319
+ return
320
+ else:
321
+ try:
322
+ _dummy_files.remove(fname)
323
+ except ValueError:
324
+ pass
325
+
326
+ #f = file(fname, 'wb')
327
+ f = BytesIO()
328
+ # if size=-1 it's Transfer-Encoding: Chunked mode, like OSX finder using this mode put data
329
+ # so the file size need get here.
330
+ if size == -2:
331
+ l = int(rfile.readline(), 16)
332
+ ltotal = 0
333
+ while l > 0:
334
+ buf = rfile.read(l)
335
+ f.write(buf) #yield buf
336
+ rfile.readline()
337
+ ltotal += l
338
+ l = int(rfile.readline(), 16)
339
+ elif size > 0: # if size=0 ,just save a empty file.
340
+ writ = 0
341
+ bs = 65536
342
+ while True:
343
+ if size != -1 and (bs > size-writ):
344
+ bs = size-writ
345
+ buf = rfile.read(bs)
346
+ if len(buf) == 0:
347
+ break
348
+ f.write(buf)
349
+ writ += len(buf)
350
+ if size != -1 and writ >= size:
351
+ break
352
+
353
+ logger.debug('ClusterIO put: %s' % fname)
354
+ clusterIO.put_file(fname, f.getvalue())
355
+
356
+ f.close()
357
+
358
+ class TempDirCollection(DirCollection):
359
+ """Temporary directories do not exist on disk. They are held in
360
+ memory on the server to provide a mechanism for creating new
361
+ directories with the create + rename/move mechanism used by most OSs"""
362
+
363
+ def __init__(self, fsdir, virdir, parent=None):
364
+ self.fsname = fsdir
365
+ self.name = virdir
366
+ if self.fsname[-1] != os.sep:
367
+ if self.fsname[-1] == '/': # fixup win/dos/mac separators
368
+ self.fsname = self.fsname[:-1] + os.sep
369
+ else:
370
+ self.fsname += os.sep
371
+ self.virname = virdir
372
+ if self.virname[-1] != '/':
373
+ self.virname += '/'
374
+ self.parent = parent
375
+ self.type = Member.M_COLLECTION
376
+ self.ctime = time()
377
+
378
+ def getProperties(self):
379
+ """Return dictionary with WebDAV properties. Values shold be
380
+ formatted according to the WebDAV specs."""
381
+ #st = os.stat(self.fsname)
382
+ p = {}
383
+ p['creationdate'] = unixdate2iso8601(self.ctime)
384
+ p['getlastmodified'] = unixdate2httpdate(self.ctime)
385
+ p['displayname'] = self.name
386
+ p['getetag'] = md5.new(self.fsname).hexdigest()
387
+
388
+ # Member.M_COLLECTION
389
+ p['resourcetype'] = '<D:collection/>'
390
+ p['iscollection'] = 1
391
+ p['getcontenttype'] = DirCollection.COLLECTION_MIME_TYPE
392
+
393
+ if self.name[0] == ".":
394
+ p['ishidden'] = 1
395
+ if True:# not os.access(self.fsname, os.W_OK):
396
+ p['isreadonly'] = 1
397
+ if self.name == '/':
398
+ p['isroot'] = 1
399
+ return p
400
+
401
+ def getMembers(self):
402
+ r = []
403
+
404
+ for d_ in _temporary_directories:
405
+ if d_.startswith(self.fsname):
406
+ d__ = d_[len(self.fsname):]
407
+ if len(d__.lstrip('/').rstrip('/').split('/')) == 1:
408
+ #temporary directory is at this level
409
+ r.append(TempDirCollection(d_, self.virname + d__))
410
+
411
+ return r
412
+
413
+
414
+ def findMember(self, name):
415
+ if (self.fsname + name).rstrip('/') in _temporary_directories:
416
+ return TempDirCollection(self.fsname + name, self.virname + name, self)
417
+
418
+ def recvMember(self, rfile, name, size, req):
419
+ #actually create the directory
420
+ #makedirs_safe(self.fsname)
421
+ #_temporary_directories.remove(self.fsname.rstrip('/'))
422
+
423
+ DirCollection.recvMember(self, rfile, name, size, req)
424
+
425
+ def unixdate2iso8601(d):
426
+ tz = timezone / 3600 # can it be fractional?
427
+ tz = '%+03d' % tz
428
+ return strftime('%Y-%m-%dT%H:%M:%S', localtime(d)) + tz + ':00'
429
+
430
+ def unixdate2httpdate(d):
431
+ return strftime('%a, %d %b %Y %H:%M:%S GMT', gmtime(d))
432
+
433
+ class Tag:
434
+ def __init__(self, name, attrs, data='', parser=None):
435
+ self.d = {}
436
+ self.name = name
437
+ self.attrs = attrs
438
+ if type(self.attrs) == type(''):
439
+ self.attrs = splitattrs(self.attrs)
440
+ for a in self.attrs:
441
+ if a.startswith('xmlns'):
442
+ nsname = a[6:]
443
+ parser.namespaces[nsname] = self.attrs[a]
444
+ self.rawname = self.name
445
+
446
+ p = name.find(':')
447
+ if p > 0:
448
+ nsname = name[0:p]
449
+ if nsname in parser.namespaces:
450
+ self.ns = parser.namespaces[nsname]
451
+ self.name = self.rawname[p+1:]
452
+ else:
453
+ self.ns = ''
454
+ self.data = data
455
+
456
+ # Emulate dictionary d
457
+ def __len__(self):
458
+ return len(self.d)
459
+
460
+ def __getitem__(self, key):
461
+ return self.d[key]
462
+
463
+ def __setitem__(self, key, value):
464
+ self.d[key] = value
465
+
466
+ def __delitem__(self, key):
467
+ del self.d[key]
468
+
469
+ def __iter__(self):
470
+ return self.d.iterkeys()
471
+
472
+ def __contains__(self, key):
473
+ return key in self.d
474
+
475
+ def __str__(self):
476
+ """Returns unicode semi human-readable representation of the structure"""
477
+ if self.attrs:
478
+ s = u'<%s %s> %s ' % (self.name, self.attrs, self.data)
479
+ else:
480
+ s = u'<%s> %s ' % (self.name, self.data)
481
+
482
+ for k in self.d:
483
+ if type(self.d[k]) == type(self):
484
+ s += u'|%s: %s|' % (k, str(self.d[k]))
485
+ else:
486
+ s += u'|' + u','.join([str(x) for x in self.d[k]]) + u'|'
487
+ return s
488
+
489
+ def addChild(self, tag):
490
+ """Adds a child to self. tag must be instance of Tag"""
491
+ if tag.name in self.d:
492
+ if type(self.d[tag.name]) == type(self): # If there are multiple sibiling tags with same name, form a list :)
493
+ self.d[tag.name] = [self.d[tag.name]]
494
+ self.d[tag.name].append(tag)
495
+ else:
496
+ self.d[tag.name] = tag
497
+ return tag
498
+
499
+ class XMLDict_Parser:
500
+ def __init__(self, xml):
501
+ self.xml = xml
502
+ self.p = 0
503
+ self.encoding = sys.getdefaultencoding()
504
+ self.namespaces = {}
505
+
506
+ def getnexttag(self):
507
+ ptag = self.xml.find('<', self.p)
508
+ if ptag < 0:
509
+ return None, None, self.xml[self.p:].strip()
510
+ data = self.xml[self.p:ptag].strip()
511
+ self.p = ptag
512
+ self.tagbegin = ptag
513
+ p2 = self.xml.find('>', self.p+1)
514
+ if p2 < 0:
515
+ raise "Malformed XML - unclosed tag?"
516
+ tag = self.xml[ptag+1:p2]
517
+ self.p = p2+1
518
+ self.tagend = p2+1
519
+ ps = tag.find(' ')
520
+ ### Change By LCJ @ 2017/9/7 from [ if ps > 0: ] ###
521
+ ### for IOS Coda Webdav support ###
522
+ if ps > 0 and tag[-1] != '/':
523
+ tag, attrs = tag.split(' ', 1)
524
+ else:
525
+ attrs = ''
526
+ return tag, attrs, data
527
+
528
+ def builddict(self):
529
+ """Builds a nested-dictionary-like structure from the xml. This method
530
+ picks up tags on the main level and calls processTag() for nested tags."""
531
+ d = Tag('<root>', '')
532
+ while True:
533
+ tag, attrs, data = self.getnexttag()
534
+ if data != '': # data is actually that between the last tag and this one
535
+ sys.stderr.write("Warning: inline data between tags?!\n")
536
+ if not tag:
537
+ break
538
+ if tag[-1] == '/': # an 'empty' tag (e.g. <empty/>)
539
+ d.addChild(Tag(tag[:-1], attrs, parser=self))
540
+ continue
541
+ elif tag[0] == '?': # special tag
542
+ t = d.addChild(Tag(tag, attrs, parser=self))
543
+ if tag == '?xml' and 'encoding' in t.attrs:
544
+ self.encoding = t.attrs['encoding']
545
+ else:
546
+ try:
547
+ self.processTag(d.addChild(Tag(tag, attrs, parser=self)))
548
+ except:
549
+ sys.stderr.write("Error processing tag %s\n" % tag)
550
+ d.encoding = self.encoding
551
+ return d
552
+
553
+ def processTag(self, dtag):
554
+ """Process single tag's data"""
555
+ until = '/'+dtag.rawname
556
+ while True:
557
+ tag, attrs, data = self.getnexttag()
558
+ if data:
559
+ dtag.data += data
560
+ if tag == None:
561
+ sys.stderr.write("Unterminated tag '"+dtag.rawname+"'?\n")
562
+ break
563
+ if tag == until:
564
+ break
565
+ if tag[-1] == '/':
566
+ dtag.addChild(Tag(tag[:-1], attrs, parser=self))
567
+ continue
568
+ self.processTag(dtag.addChild(Tag(tag, attrs, parser=self)))
569
+
570
+ def splitattrs(att):
571
+ """Extracts name="value" pairs from string; returns them as dictionary"""
572
+ d = {}
573
+ for m in re.findall('([a-zA-Z_][a-zA-Z_:0-9]*?)="(.+?)"', att):
574
+ d[m[0]] = m[1]
575
+ return d
576
+
577
+ def builddict(xml):
578
+ """Wrapper function for straightforward parsing"""
579
+ p = XMLDict_Parser(xml)
580
+ return p.builddict()
581
+
582
+ #hold new directories in memory (not on disk) so they can be renamed
583
+ _temporary_directories = []
584
+ #similarly, for OSX 0-sized files
585
+ _dummy_files = []
586
+
587
+
588
+ class DAVRequestHandler(BaseHTTPRequestHandler):
589
+ server_version = "Pythonista_dav"
590
+ all_props = ['name', 'parentname', 'href', 'ishidden', 'isreadonly', 'getcontenttype',
591
+ 'contentclass', 'getcontentlanguage', 'creationdate', 'lastaccessed', 'getlastmodified',
592
+ 'getcontentlength', 'iscollection', 'isstructureddocument', 'defaultdocument',
593
+ 'displayname', 'isroot', 'resourcetype']
594
+ basic_props = ['name', 'getcontenttype', 'getcontentlength', 'creationdate', 'iscollection']
595
+ auth_file = False
596
+ auth_enable = False
597
+ Auserlist = []
598
+
599
+ # User Auth
600
+ # if success ,return False;
601
+ # Get WebDav User/Pass file : wdusers.conf
602
+ # file formate: user:pass\n user:pass\n
603
+ def WebAuth(self):
604
+ if self.server.auth_enable:
605
+ if 'Authorization' in self.headers:
606
+ try:
607
+ AuthInfo = self.headers['Authorization'][6:]
608
+ except:
609
+ AuthInfo = ''
610
+ if AuthInfo in self.server.userpwd:
611
+ return False # Auth success
612
+ self.send_response(401,'Authorization Required')
613
+ self.send_header('WWW-Authenticate', 'Basic realm="WebDav Auth"')
614
+ self.send_header('Content-type', 'text/html')
615
+ self.end_headers()
616
+ return True
617
+ else:
618
+ return False
619
+
620
+ def do_OPTIONS(self):
621
+ if self.WebAuth():
622
+ return
623
+ self.send_response(200, DAVRequestHandler.server_version)
624
+ #self.send_header('Allow', 'GET, HEAD, POST, PUT, DELETE, OPTIONS, PROPFIND, PROPPATCH, MKCOL, LOCK, UNLOCK, MOVE, COPY')
625
+ self.send_header('Allow',
626
+ 'GET, HEAD, POST, PUT, OPTIONS, PROPFIND, PROPPATCH, MKCOL')#, LOCK, UNLOCK')
627
+ self.send_header('Content-length', '0')
628
+ self.send_header('X-Server-Copyright', DAVRequestHandler.server_version)
629
+ self.send_header('DAV', '1, 2') #OSX Finder need Ver 2, if Ver 1 -- read only
630
+ self.send_header('MS-Author-Via', 'DAV')
631
+ self.end_headers()
632
+
633
+ def do_DELETE(self):
634
+ if self.WebAuth():
635
+ return
636
+
637
+ logger.debug('Attempting to delete %s' % self.path)
638
+
639
+ self.send_error(403, 'Forbidden')
640
+ self.send_header('Content-length', '0')
641
+ self.end_headers()
642
+ return
643
+
644
+ # path = urllib.unquote(self.path)
645
+ # if path == '':
646
+ # self.send_error(404, 'Object not found')
647
+ # self.send_header('Content-length', '0')
648
+ # self.end_headers()
649
+ # return
650
+ # path = self.server.root.rootdir() + path
651
+ # if os.path.isfile(path):
652
+ # os.remove(path) #delete file
653
+ # elif os.path.isdir(path):
654
+ # shutil.rmtree(path) #delete dir
655
+ # else:
656
+ # self.send_response(404,'Not Found')
657
+ # self.send_header('Content-length', '0')
658
+ # self.end_headers()
659
+ # return
660
+ # self.send_response(204, 'No Content')
661
+ # self.send_header('Content-length', '0')
662
+ # self.end_headers()
663
+
664
+ def do_MKCOL(self):
665
+ if self.WebAuth():
666
+ return
667
+ path = urllib.unquote(self.path)
668
+
669
+ logger.debug('MKCOL: %s' % path)
670
+
671
+ if path != '':
672
+ path = self.server.root.rootdir().rstrip('/') + '/' + path.lstrip('/')
673
+ if os.path.exists(path) == False:
674
+ #os.mkdir(path)
675
+ _temporary_directories.append(path)
676
+ self.send_response(201, "Created")
677
+ self.send_header('Content-length', '0')
678
+ self.end_headers()
679
+ return
680
+
681
+ self.send_response(403, "OK")
682
+ self.send_header('Content-length', '0')
683
+ self.end_headers()
684
+
685
+ def do_MOVE(self):
686
+ if self.WebAuth():
687
+ return
688
+ oldfile = self.server.root.rootdir().rstrip('/') + '/' + urllib.unquote(self.path).lstrip('/').rstrip('/')
689
+ newfile = self.server.root.rootdir().rstrip('/') + '/' + urlparse.urlparse(urllib.unquote(self.headers['Destination'])).path.lstrip('/').rstrip('/')
690
+
691
+ print('MOVE: %s -> %s' % (oldfile, newfile))
692
+ #print _temporary_directories
693
+
694
+ if oldfile in _temporary_directories:
695
+ _temporary_directories.remove(oldfile)
696
+ _temporary_directories.append(newfile)
697
+
698
+ #if (os.path.isfile(oldfile)==True and os.path.isfile(newfile)==False):
699
+ # shutil.move(oldfile,newfile)
700
+ #if (os.path.isdir(oldfile)==True and os.path.isdir(newfile)==False):
701
+ # os.rename(oldfile,newfile)
702
+ self.send_response(201, "Created")
703
+ self.send_header('Content-length', '0')
704
+ self.end_headers()
705
+ return
706
+ else:
707
+ self.send_error(403, 'Forbidden')
708
+ self.send_header('Content-length', '0')
709
+ self.end_headers()
710
+ return
711
+
712
+
713
+ def do_COPY(self):
714
+ if self.WebAuth():
715
+ return
716
+
717
+ logger.debug('Attempting to copy %s' % self.path)
718
+
719
+ self.send_error(403, 'Forbidden')
720
+ self.send_header('Content-length', '0')
721
+ self.end_headers()
722
+ return
723
+ # oldfile = self.server.root.rootdir() + urllib.unquote(self.path)
724
+ # newfile = self.server.root.rootdir() + urlparse.urlparse(urllib.unquote(self.headers['Destination'])).path
725
+ # if (os.path.isfile(oldfile)==True): # and os.path.isfile(newfile)==False): copy can rewrite.
726
+ # shutil.copyfile(oldfile,newfile)
727
+ # self.send_response(201, "Created")
728
+ # self.send_header('Content-length', '0')
729
+ # self.end_headers()
730
+
731
+ def do_LOCK(self):
732
+ if 'Content-length' in self.headers:
733
+ req = self.rfile.read(int(self.headers['Content-length']))
734
+ else:
735
+ req = self.rfile.read()
736
+ d = builddict(req)
737
+ #logger.debug('do_LOCK: path = ' + self.path)
738
+ #logger.debug('do_LOCK: headers = ' + str(self.headers))
739
+ #logger.debug('do_LOCK: req = ' + req)
740
+ #logger.debug('do_LOCK: d = ' + str(d))
741
+
742
+ if req == '':
743
+ #refreshing lock (windows)
744
+ locktoken = self.headers['If']
745
+ logger.debug(locktoken)
746
+ lockid = locktoken[18:-2]
747
+ logger.debug(lockid)
748
+
749
+ clientid = 'foo'
750
+ else:
751
+ try:
752
+ clientid = str(d['lockinfo']['owner']['href'])[7:] # temp: need Change other method!!!
753
+ except KeyError:
754
+ pass
755
+ clientid = 'foo'
756
+ lockid = str(uuid.uuid1())
757
+
758
+ retstr = '<?xml version="1.0" encoding="utf-8" ?>\n<D:prop xmlns:D="DAV:">\n<D:lockdiscovery>\n<D:activelock>\n<D:locktype><D:write/></D:locktype>\n<D:lockscope><D:exclusive/></D:lockscope>\n<D:depth>Infinity</D:depth>\n<D:owner>\n<D:href>'+clientid+'</D:href>\n</D:owner>\n<D:timeout>3600</D:timeout>\n<D:locktoken><D:href>opaquelocktoken:'+lockid+'</D:href></D:locktoken>\n</D:activelock>\n</D:lockdiscovery>\n</D:prop>\n'
759
+ self.send_response(200,'OK')
760
+ self.send_header("Content-type",'text/xml')
761
+ self.send_header("charset",'"utf-8"')
762
+ self.send_header("Lock-Token",'<opaquelocktoken:'+lockid+'>')
763
+ self.send_header('Content-Length',len(retstr))
764
+ self.end_headers()
765
+ self.wfile.write(retstr)
766
+ self.wfile.flush()
767
+
768
+ def do_UNLOCK(self):
769
+ # frome self.headers get Lock-Token:
770
+ logger.debug('do_UNLOCK')
771
+ self.send_response(204, 'No Content') # unlock using 204 for sucess.
772
+ self.send_header('Content-length', '0')
773
+ self.end_headers()
774
+
775
+ def do_PROPFIND(self):
776
+ if self.WebAuth():
777
+ return
778
+ depth = 'infinity'
779
+ if 'Depth' in self.headers:
780
+ depth = self.headers['Depth'].lower()
781
+ if 'Content-length' in self.headers:
782
+ req = self.rfile.read(int(self.headers['Content-length']))
783
+ else:
784
+ req = self.rfile.read()
785
+ d = builddict(req) # change all http.request to dict stru
786
+ wished_all = False
787
+ if len(d) == 0:
788
+ wished_props = DAVRequestHandler.basic_props
789
+ else:
790
+ if 'allprop' in d['propfind']:
791
+ wished_props = DAVRequestHandler.all_props
792
+ wished_all = True
793
+ else:
794
+ wished_props = []
795
+ for prop in d['propfind']['prop']:
796
+ ### 2017/9/7 Edit By LCJ , Old is [ wished_props.append(prop) ]
797
+ ### for IOS Coda Webdav support ###
798
+ wished_props.append(prop.split(' ')[0])
799
+ path, elem = self.path_elem()
800
+ if not elem:
801
+ if len(path) >= 1: # it's a non-existing file
802
+ self.send_response(404, 'Not Found')
803
+ self.send_header('Content-length', '0')
804
+ self.end_headers()
805
+ return
806
+ else:
807
+ elem = self.server.root # fixup root lookups?
808
+ if depth != '0' and not elem: #or elem.type != Member.M_COLLECTION:
809
+ self.send_response(406, 'This is not allowed')
810
+ self.send_header('Content-length', '0')
811
+ self.end_headers()
812
+ return
813
+ self.send_response(207, 'Multi-Status') #Multi-Status
814
+ self.send_header('Content-Type', 'text/xml')
815
+ self.send_header("charset",'"utf-8"')
816
+ # !!! if need debug output xml info,please set last var from False to True.
817
+ w = BufWriter(self.wfile, True)
818
+ w.write('<?xml version="1.0" encoding="utf-8" ?>\n')
819
+ w.write('<D:multistatus xmlns:D="DAV:" xmlns:Z="urn:schemas-microsoft-com:">\n')
820
+
821
+ def write_props_member(w, m):
822
+ w.write('<D:response>\n<D:href>%s</D:href>\n<D:propstat>\n<D:prop>\n' % urllib.quote(m.virname)) #add urllib.quote for chinese
823
+ props = m.getProperties() # get the file or dir props
824
+ # For OSX Finder : getlastmodified,getcontentlength,resourceType
825
+ if ('quota-available-bytes' in wished_props) or ('quota-used-bytes'in wished_props) or ('quota' in wished_props) or ('quotaused'in wished_props):
826
+ sDisk = os.statvfs('/') #TODO - FIXME
827
+ props['quota-used-bytes'] = (sDisk.f_blocks - sDisk.f_bavail) * sDisk.f_frsize
828
+ props['quotaused'] = (sDisk.f_blocks - sDisk.f_bavail) * sDisk.f_frsize
829
+ props['quota-available-bytes'] = sDisk.f_bavail * sDisk.f_frsize
830
+ props['quota'] = sDisk.f_bavail * sDisk.f_frsize
831
+
832
+ #print props
833
+ for wp in wished_props:
834
+ if props.has_key(wp) == False:
835
+ w.write(' <D:%s/>\n' % wp)
836
+ else:
837
+ w.write(' <D:%s>%s</D:%s>\n' % (wp, str(props[wp]), wp))
838
+ w.write('</D:prop>\n<D:status>HTTP/1.1 200 OK</D:status>\n</D:propstat>\n</D:response>\n')
839
+
840
+ #print props
841
+
842
+ write_props_member(w, elem)
843
+ if depth == '1':
844
+ for m in elem.getMembers():
845
+ write_props_member(w,m)
846
+ w.write('</D:multistatus>')
847
+ self.send_header('Content-Length', str(w.getSize()))
848
+ self.end_headers()
849
+ w.flush()
850
+
851
+ def do_PROPPATCH(self):
852
+ if self.WebAuth():
853
+ return
854
+
855
+ if 'Content-length' in self.headers:
856
+ req = self.rfile.read(int(self.headers['Content-length']))
857
+ else:
858
+ req = self.rfile.read()
859
+
860
+ logger.debug('Attempting to proppatch %s' % self.path)
861
+ logger.debug('do_PROPPATCH: req = ' + req)
862
+
863
+ self.send_error(403, 'Forbidden')
864
+ self.send_header('Content-length', '0')
865
+ self.end_headers()
866
+ return
867
+
868
+ # path = urllib.unquote(self.path)
869
+ # if path == '':
870
+ # self.send_error(404, 'Object not found')
871
+ # self.send_header('Content-length', '0')
872
+ # self.end_headers()
873
+ # return
874
+ # path = self.server.root.rootdir() + path
875
+ # if os.path.isfile(path):
876
+ # os.remove(path) #delete file
877
+ # elif os.path.isdir(path):
878
+ # shutil.rmtree(path) #delete dir
879
+ # else:
880
+ # self.send_response(404,'Not Found')
881
+ # self.send_header('Content-length', '0')
882
+ # self.end_headers()
883
+ # return
884
+ # self.send_response(204, 'No Content')
885
+ # self.send_header('Content-length', '0')
886
+ # self.end_headers()
887
+
888
+ def do_GET(self, onlyhead=False):
889
+ if self.WebAuth():
890
+ return
891
+ path, elem = self.path_elem()
892
+ if not elem:
893
+ self.send_error(404, 'Object not found')
894
+ return
895
+ try:
896
+ props = elem.getProperties()
897
+ except:
898
+ self.send_response(500, "Error retrieving properties")
899
+ self.end_headers()
900
+ return
901
+ # when the client had Range: bytes=3156-3681
902
+ bpoint = 0
903
+ epoint = 0
904
+ fullen = props['getcontentlength']
905
+ logger.debug('do_GET: fullen = ' + str(fullen))
906
+ if 'Range' in self.headers:
907
+ stmp = self.headers['Range'][6:]
908
+ stmp = stmp.split('-')
909
+ try:
910
+ bpoint = int(stmp[0])
911
+ except:
912
+ bpoint = 0
913
+ try:
914
+ epoint = int(stmp[1])
915
+ except:
916
+ epoint = fullen - 1
917
+ if (epoint<=bpoint):
918
+ bpoint = 0
919
+ epoint = fullen - 1
920
+ fullen = epoint - bpoint + 1
921
+ if epoint>0:
922
+ self.send_response(206, 'Partial Content')
923
+ self.send_header("Content-Range", " Bytes %s-%s/%s" % (bpoint, epoint, fullen))
924
+ else:
925
+ self.send_response(200, 'OK')
926
+ if elem.type == Member.M_MEMBER:
927
+ self.send_header("Content-type", props['getcontenttype'])
928
+ self.send_header("Last-modified", props['getlastmodified'])
929
+ self.send_header("Content-length", fullen)
930
+ else:
931
+ try:
932
+ ctype = props['getcontenttype']
933
+ except:
934
+ ctype = DirCollection.COLLECTION_MIME_TYPE
935
+ self.send_header("Content-type", ctype)
936
+ self.end_headers()
937
+ if not onlyhead:
938
+ if fullen >0 : # all 0 size file don't need this
939
+ elem.sendData(self.wfile,bpoint,epoint)
940
+
941
+ def do_HEAD(self):
942
+ self.do_GET(True) # HEAD should behave like GET, only without contents
943
+
944
+ def do_PUT(self):
945
+ if self.WebAuth():
946
+ return
947
+ try:
948
+ if 'Content-length' in self.headers:
949
+ size = int(self.headers['Content-length'])
950
+ elif 'Transfer-Encoding' in self.headers:
951
+ if self.headers['Transfer-Encoding'].lower()=='chunked':
952
+ size = -2
953
+ else:
954
+ size = -1
955
+ path, elem = self.path_elem_prev()
956
+ ename = path[-1]
957
+ except:
958
+ logger.exception('Error parsing request on: %s' % self.path)
959
+ self.send_response(400, 'Cannot parse request')
960
+ self.send_header('Content-length', '0')
961
+ self.end_headers()
962
+ return
963
+ # for OSX finder, it's first send a 0 byte file,and you need response a 201 code,and then osx send real file.
964
+ # OSX finder don't using content-length.
965
+ if ename == '.DS_Store':
966
+ logger.debug('Trying to save .DS_Store')
967
+ self.send_response(403, 'Forbidden')
968
+ self.send_header('Content-length', '0')
969
+ self.end_headers()
970
+ elif ename.startswith('._'):
971
+ #block OSX resource forks
972
+ logger.debug('Trying to save resource fork')
973
+ self.send_response(403, 'Forbidden')
974
+ self.send_header('Content-length', '0')
975
+ self.end_headers()
976
+ else:
977
+ try:
978
+ #if not size == 0:
979
+ elem.recvMember(self.rfile, ename, size, self)
980
+ except:
981
+ logger.exception('Error saving file: %s' % self.path)
982
+ self.send_response(500, 'Cannot save file')
983
+ self.send_header('Content-length', '0')
984
+ self.end_headers()
985
+ return
986
+ if size == 0:
987
+ logger.debug('File created %s' % path)
988
+ self.send_response(201, 'Created')
989
+ else:
990
+ logger.debug('File saved %s' % path)
991
+ self.send_response(200, 'OK')
992
+ self.send_header('Content-length', '0')
993
+ self.end_headers()
994
+
995
+ def split_path(self, path):
996
+ """Splits path string in form '/dir1/dir2/file' into parts"""
997
+ p = path.split('/')[1:]
998
+ while p and p[-1] in ('','/'):
999
+ p = p[:-1]
1000
+ if len(p) > 0:
1001
+ p[-1] += '/'
1002
+ return p
1003
+
1004
+ def path_elem(self):
1005
+ """Returns split path (see split_path()) and Member object of the last element"""
1006
+ path = self.split_path(urllib.unquote(self.path))
1007
+ elem = self.server.root
1008
+ for e in path:
1009
+ elem = elem.findMember(e)
1010
+ if elem == None:
1011
+ break
1012
+ return (path, elem)
1013
+
1014
+ def path_elem_prev(self):
1015
+ """Returns split path (see split_path()) and Member object of the next-to-last element"""
1016
+ path = self.split_path(urllib.unquote(self.path))
1017
+ elem = self.server.root
1018
+ for e in path[:-1]:
1019
+ elem = elem.findMember(e)
1020
+ if elem == None:
1021
+ break
1022
+ return (path, elem)
1023
+
1024
+ # disable log info output to screen
1025
+ def log_message(self,format,*args):
1026
+ if True:
1027
+ logger.info("%s - - [%s] %s\n" %
1028
+ (self.client_address[0],
1029
+ self.log_date_time_string(),
1030
+ format % args))
1031
+
1032
+ class BufWriter:
1033
+ def __init__(self, w, debug=True):
1034
+ self.w = w
1035
+ self.buf = StringIO(u'')
1036
+ self.debug = debug
1037
+
1038
+ def write(self, s):
1039
+ if self.debug:
1040
+ sys.stderr.write(s)
1041
+ self.buf.write(s)
1042
+ #self.buf.write(unicode(s,'utf-8')) # add unicode(s,'utf-8') for chinese code.
1043
+
1044
+ def flush(self):
1045
+ self.w.write(self.buf.getvalue().encode('utf-8'))
1046
+ self.w.flush()
1047
+
1048
+ def getSize(self):
1049
+ return len(self.buf.getvalue().encode('utf-8'))
1050
+
1051
+ class DAVServer(ThreadingMixIn, HTTPServer):
1052
+ def __init__(self, addr, handler, root, userpwd):
1053
+ HTTPServer.__init__(self, addr, handler)
1054
+ self.root = root
1055
+ self.userpwd = userpwd # WebDav Auth user:passwd
1056
+ if len(userpwd)>0:
1057
+ self.auth_enable = True
1058
+ else:
1059
+ self.auth_enable = False
1060
+
1061
+ # disable the broken pipe error message
1062
+ def finish_request(self,request,client_address):
1063
+ try:
1064
+ HTTPServer.finish_request(self, request, client_address)
1065
+ except socket.error as e:
1066
+ pass
1067
+
1068
+
1069
+
1070
+ def main():
1071
+ # WebDav TCP Port
1072
+ srvport = 9090
1073
+ # Get local IP address
1074
+ import socket
1075
+ myaddr = get_localip()
1076
+ print('PYMECluster WebDav Server run at '+myaddr+':'+str(srvport)+'...')
1077
+ server_address = ('', srvport)
1078
+ # WebDav Auth User/Password file
1079
+ # if not this file ,the auth function disable.
1080
+ # file format: user:passwd\n user:passwd\n
1081
+ # or you can change your auth mode and file save format
1082
+ userpwd = []
1083
+ try:
1084
+ with open('wdusers.conf', 'r') as f:
1085
+ for uinfo in f.readlines():
1086
+ uinfo = uinfo.replace('\n','')
1087
+ if len(uinfo)>2:
1088
+ userpwd.append(base64.b64encode(uinfo))
1089
+ except:
1090
+ userpwd.append(base64.b64encode('test:test'))
1091
+ pass
1092
+ # first is Server root dir, Second is virtual dir
1093
+ # **** Change first ./ to your dir , etc :/mnt/flash/public
1094
+ root = DirCollection('/', '/')
1095
+ httpd = DAVServer(server_address, DAVRequestHandler, root, userpwd)
1096
+
1097
+ #httpd.socket = ssl.wrap_socket (httpd.socket, certfile='./server.pem', server_side=True)
1098
+
1099
+ httpd.serve_forever() # todo: add some control over starting and stopping the server
1100
+
1101
+ if __name__ == '__main__':
1102
+ main()