pytessel 1.2.4__cp38-cp38-macosx_11_0_arm64.whl

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  1. pytessel/__init__.py +3 -0
  2. pytessel/_version.py +1 -0
  3. pytessel/isosurface.cpp +561 -0
  4. pytessel/isosurface.h +180 -0
  5. pytessel/isosurface_mesh.cpp +144 -0
  6. pytessel/isosurface_mesh.h +104 -0
  7. pytessel/pytessel.cpython-38-darwin.so +0 -0
  8. pytessel/scalar_field.cpp +239 -0
  9. pytessel/scalar_field.h +104 -0
  10. pytessel-1.2.4.dist-info/LICENSE +674 -0
  11. pytessel-1.2.4.dist-info/METADATA +160 -0
  12. pytessel-1.2.4.dist-info/RECORD +14 -0
  13. pytessel-1.2.4.dist-info/WHEEL +5 -0
  14. pytessel-1.2.4.dist-info/top_level.txt +1 -0
pytessel-1.2.4.dist-info/METADATA ADDED
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+ Metadata-Version: 2.1
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+ Name: pytessel
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+ Version: 1.2.4
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+ Summary: Python package for building isosurfaces from 3D scalar fields
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+ Home-page: https://github.com/ifilot/pytessel
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+ Author: Ivo Filot
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+ Author-email: ivo@ivofilot.nl
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Operating System :: POSIX
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+ Requires-Python: >=3.5
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: numpy
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+
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+ # PyTessel
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+
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+ [![CI](https://github.com/ifilot/pytessel/actions/workflows/build_conda.yml/badge.svg)](https://github.com/ifilot/pytessel/actions/workflows/build_Conda.yml)
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+ [![CI](https://github.com/ifilot/pytessel/actions/workflows/build_wheels.yml/badge.svg)](https://github.com/ifilot/pytessel/actions/workflows/build_wheels.yml)
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+ [![Anaconda-Server Badge](https://anaconda.org/ifilot/pytessel/badges/version.svg)](https://anaconda.org/ifilot/pytessel)
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+ [![PyPI](https://img.shields.io/pypi/v/pytessel?color=green)](https://pypi.org/project/pytessel/)
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+ [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
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+
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+ ## Purpose
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+
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+ Python package for building isosurfaces from 3D scalar fields
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+
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+ ## Installation
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+
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+ ### Anaconda
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+
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+ [![Anaconda version](https://anaconda.org/ifilot/pytessel/badges/version.svg)](https://anaconda.org/ifilot/pytessel)
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+ [![Anaconda last release](https://anaconda.org/ifilot/pytessel/badges/latest_release_date.svg)](https://anaconda.org/ifilot/pytessel)
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+ [![Anaconda platforms](https://anaconda.org/ifilot/pytessel/badges/platforms.svg)](https://anaconda.org/ifilot/pytessel)
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+ [![Anaconda downloads](https://anaconda.org/ifilot/pytessel/badges/downloads.svg)](https://anaconda.org/ifilot/pytessel)
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+
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+
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+ ```
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+ conda install -c ifilot pyqint
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+ ```
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+
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+ ### PyPi
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+
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+ [![PyPI](https://img.shields.io/pypi/v/pytessel?color=green)](https://pypi.org/project/pytessel/)
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+ [![PyPI - Downloads](https://img.shields.io/pypi/dm/pypi)](https://pypi.org/project/pytessel/)
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+ ![PyPI - Python Version](https://img.shields.io/pypi/pyversions/pytessel)
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+
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+ ```
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+ pip install pytessel
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+ ```
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+
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+ ## Getting started
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+
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+ In the script below, the isosurface of a threedimensional Gaussian function is
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+ constructed. The isosurface is written to `test.ply` and can, for example,
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+ be opened using `ctmviewer` (Linux) or `3D viewer` (Windows).
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+
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+ ```python
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+ from pytessel import PyTessel
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+ import numpy as np
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+
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+ def main():
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+ pytessel = PyTessel()
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+
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+ # generate some data
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+ x = np.linspace(0, 10, 50)
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+ # the grid is organized with z the slowest moving index and x the fastest moving index
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+ grid = np.flipud(np.vstack(np.meshgrid(x, x, x, indexing='ij')).reshape(3,-1)).T
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+
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+ R = [5,5,5]
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+ scalarfield = np.reshape(np.array([gaussian(r,R) for r in grid]), (len(x),len(x),len(x)))
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+ unitcell = np.diag(np.ones(3) * 10.0)
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+
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+ vertices, normals, indices = pytessel.marching_cubes(scalarfield.flatten(), scalarfield.shape, unitcell.flatten(), 0.1)
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+
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+ pytessel.write_ply('test.ply', vertices, normals, indices)
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+
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+ def gaussian(r, R):
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+ return np.exp(-(r-R).dot((r-R)))
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+
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+ if __name__ == '__main__':
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+ main()
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+ ```
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+
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+ ## Isosurface quality
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+
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+ In the script below, 6 different images are created of an icosahedral "metaball" using a grid
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+ of `10x10x10`,`20x20x20`,`25x25x25`,`50x50x50`,`100x100x100`, and `200x200x200` points. The
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+ resulting `.ply` files are rendered using [Blender](https://www.blender.org/).
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+
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+ ```python
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+ from pytessel import PyTessel
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+ import numpy as np
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+
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+ def main():
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+ """
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+ Build 6 .ply files of increasing quality
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+ """
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+ pytessel = PyTessel()
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+
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+ for nrpoints in [10,20,25,50,100,200]:
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+ sz = 3
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+
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+ x = np.linspace(-sz, sz, nrpoints)
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+ y = np.linspace(-sz, sz, nrpoints)
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+ z = np.linspace(-sz, sz, nrpoints)
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+
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+ xx, yy, zz, field = icosahedron_field(x,y,z)
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+
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+ unitcell = np.diag(np.ones(3) * sz * 2)
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+ pytessel = PyTessel()
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+ isovalue = 3.75
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+ vertices, normals, indices = pytessel.marching_cubes(field.flatten(), field.shape, unitcell.flatten(), isovalue)
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+
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+ pytessel.write_ply('icosahedron_%03i.ply' % nrpoints, vertices, normals, indices)
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+
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+ def icosahedron_field(x,y,z):
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+ """
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+ Produce a scalar field for the icosahedral metaballs
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+ """
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+ phi = (1 + np.sqrt(5)) / 2
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+ vertices = [
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+ [0,1,phi],
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+ [0,-1,-phi],
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+ [0,1,-phi],
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+ [0,-1,phi],
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+ [1,phi,0],
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+ [-1,-phi,0],
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+ [1,-phi,0],
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+ [-1,phi,0],
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+ [phi,0,1],
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+ [-phi,0,-1],
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+ [phi,0,-1],
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+ [-phi,0,1]
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+ ]
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+
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+ xx,yy,zz = np.meshgrid(x,y,z)
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+ field = np.zeros_like(xx)
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+ for v in vertices:
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+ field += f(xx,yy,zz,v[0], v[1],v[2])
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+
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+ return xx,yy,zz,field
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+
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+ def f(x,y,z,X0,Y0,Z0):
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+ """
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+ Single metaball function
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+ """
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+ return 1 / ((x - X0)**2 + (y - Y0)**2 + (z - Z0)**2)
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+
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+ if __name__ == '__main__':
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+ main()
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+ ```
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+
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+ ![Icosahedral metaballs](https://raw.githubusercontent.com/ifilot/pytessel/master/img/metaballs_3x2.png)
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+
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+ ## Local compilation (Linux)
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+
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+ ```bash
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+ python3 setup.py build_ext --inplace bdist
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+ ```
pytessel-1.2.4.dist-info/RECORD ADDED
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+ pytessel/_version.py,sha256=XBKH8E1LmDxv06U39yqMBbXZapOERFgICEDYZs_kRso,22
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+ pytessel/isosurface_mesh.cpp,sha256=zoahovBodabqx2zfHkW5xIGBvU84n15tUlsy0yyexp8,6387
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+ pytessel/pytessel.cpython-38-darwin.so,sha256=3TzS7TVhGLF0TT6KKUbgyC0UaLW_QSLBQ62iSqjFj9k,176656
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+ pytessel/__init__.py,sha256=vro51HMaT-ePmW0CgIsDkOgTzutYGB2UgmyV7elT09A,66
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+ pytessel/isosurface_mesh.h,sha256=5n0TJDDlQBcJu9SOxTmW21_g8YEP5Jq9GVrVwMh7IH0,3458
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+ pytessel/isosurface.h,sha256=dpenMn9T2KuiYw112HuEdIkuh7fqp12FaVJE-00vMsY,5570
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+ pytessel/scalar_field.cpp,sha256=Ey1LxTnU_Ul40eIZvZZWgTnhJ8P-dP3aK16nEiOEOsk,8818
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+ pytessel/isosurface.cpp,sha256=Q4a3lqrgnWGfwyZEdUnC6uSCQ46izSO-8SMWrcGTqWg,20664
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+ pytessel/scalar_field.h,sha256=sfGoX7VtbA6V99dMqLDpYq79xCFFJAKXL1UXd5QBxWs,3593
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+ pytessel-1.2.4.dist-info/RECORD,,
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+ pytessel-1.2.4.dist-info/LICENSE,sha256=4cCtcomD2KVzNeUs8QZPGv_R1FQXPYzr0-2LSnK0hwQ,35121
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+ pytessel-1.2.4.dist-info/WHEEL,sha256=9FabR3Kab7Nb3lO5nBQWtZc544XJ0hYCmiQC2RH2bHM,107
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+ pytessel-1.2.4.dist-info/top_level.txt,sha256=QDauMEeJ6MuBmtCTV4HZAr1XodXsUesXTlcImp5LE54,9
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+ pytessel-1.2.4.dist-info/METADATA,sha256=Td_69V4krFF8epMbV-l6PAiTlxyaLvvi-_ev5Iy3iaU,5009
pytessel-1.2.4.dist-info/WHEEL ADDED
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+ Wheel-Version: 1.0
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+ Generator: setuptools (75.3.2)
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+ Root-Is-Purelib: false
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+ Tag: cp38-cp38-macosx_11_0_arm64
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+
pytessel-1.2.4.dist-info/top_level.txt ADDED
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+ pytessel