pytessel 1.2.4__cp311-cp311-macosx_11_0_arm64.whl
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- pytessel/__init__.py +3 -0
- pytessel/_version.py +1 -0
- pytessel/isosurface.cpp +561 -0
- pytessel/isosurface.h +180 -0
- pytessel/isosurface_mesh.cpp +144 -0
- pytessel/isosurface_mesh.h +104 -0
- pytessel/pytessel.cpython-311-darwin.so +0 -0
- pytessel/scalar_field.cpp +239 -0
- pytessel/scalar_field.h +104 -0
- pytessel-1.2.4.dist-info/LICENSE +674 -0
- pytessel-1.2.4.dist-info/METADATA +169 -0
- pytessel-1.2.4.dist-info/RECORD +14 -0
- pytessel-1.2.4.dist-info/WHEEL +5 -0
- pytessel-1.2.4.dist-info/top_level.txt +1 -0
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Metadata-Version: 2.2
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Name: pytessel
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Version: 1.2.4
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Summary: Python package for building isosurfaces from 3D scalar fields
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Home-page: https://github.com/ifilot/pytessel
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Author: Ivo Filot
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Author-email: ivo@ivofilot.nl
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Classifier: Programming Language :: Python :: 3
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: POSIX
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Requires-Python: >=3.5
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: numpy
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Dynamic: author
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Dynamic: author-email
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Dynamic: classifier
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Dynamic: description
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Dynamic: description-content-type
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Dynamic: home-page
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Dynamic: requires-dist
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Dynamic: requires-python
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Dynamic: summary
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# PyTessel
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[](https://github.com/ifilot/pytessel/actions/workflows/build_Conda.yml)
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[](https://github.com/ifilot/pytessel/actions/workflows/build_wheels.yml)
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[](https://anaconda.org/ifilot/pytessel)
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[](https://pypi.org/project/pytessel/)
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[](https://www.gnu.org/licenses/gpl-3.0)
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## Purpose
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Python package for building isosurfaces from 3D scalar fields
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## Installation
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### Anaconda
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[](https://anaconda.org/ifilot/pytessel)
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[](https://anaconda.org/ifilot/pytessel)
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[](https://anaconda.org/ifilot/pytessel)
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[](https://anaconda.org/ifilot/pytessel)
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```
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conda install -c ifilot pyqint
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```
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### PyPi
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[](https://pypi.org/project/pytessel/)
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[](https://pypi.org/project/pytessel/)
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```
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pip install pytessel
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```
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## Getting started
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In the script below, the isosurface of a threedimensional Gaussian function is
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constructed. The isosurface is written to `test.ply` and can, for example,
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be opened using `ctmviewer` (Linux) or `3D viewer` (Windows).
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```python
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from pytessel import PyTessel
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import numpy as np
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def main():
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pytessel = PyTessel()
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# generate some data
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x = np.linspace(0, 10, 50)
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# the grid is organized with z the slowest moving index and x the fastest moving index
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grid = np.flipud(np.vstack(np.meshgrid(x, x, x, indexing='ij')).reshape(3,-1)).T
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R = [5,5,5]
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scalarfield = np.reshape(np.array([gaussian(r,R) for r in grid]), (len(x),len(x),len(x)))
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unitcell = np.diag(np.ones(3) * 10.0)
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vertices, normals, indices = pytessel.marching_cubes(scalarfield.flatten(), scalarfield.shape, unitcell.flatten(), 0.1)
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pytessel.write_ply('test.ply', vertices, normals, indices)
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def gaussian(r, R):
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return np.exp(-(r-R).dot((r-R)))
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if __name__ == '__main__':
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main()
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```
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## Isosurface quality
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In the script below, 6 different images are created of an icosahedral "metaball" using a grid
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of `10x10x10`,`20x20x20`,`25x25x25`,`50x50x50`,`100x100x100`, and `200x200x200` points. The
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resulting `.ply` files are rendered using [Blender](https://www.blender.org/).
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```python
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from pytessel import PyTessel
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import numpy as np
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def main():
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"""
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Build 6 .ply files of increasing quality
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"""
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pytessel = PyTessel()
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for nrpoints in [10,20,25,50,100,200]:
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sz = 3
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x = np.linspace(-sz, sz, nrpoints)
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y = np.linspace(-sz, sz, nrpoints)
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z = np.linspace(-sz, sz, nrpoints)
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xx, yy, zz, field = icosahedron_field(x,y,z)
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unitcell = np.diag(np.ones(3) * sz * 2)
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pytessel = PyTessel()
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isovalue = 3.75
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vertices, normals, indices = pytessel.marching_cubes(field.flatten(), field.shape, unitcell.flatten(), isovalue)
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pytessel.write_ply('icosahedron_%03i.ply' % nrpoints, vertices, normals, indices)
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def icosahedron_field(x,y,z):
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"""
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Produce a scalar field for the icosahedral metaballs
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"""
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phi = (1 + np.sqrt(5)) / 2
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vertices = [
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[0,1,phi],
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[0,-1,-phi],
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[0,1,-phi],
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[0,-1,phi],
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[1,phi,0],
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[-1,-phi,0],
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[1,-phi,0],
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[-1,phi,0],
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[phi,0,1],
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[-phi,0,-1],
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[phi,0,-1],
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[-phi,0,1]
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]
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xx,yy,zz = np.meshgrid(x,y,z)
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field = np.zeros_like(xx)
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for v in vertices:
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field += f(xx,yy,zz,v[0], v[1],v[2])
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return xx,yy,zz,field
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def f(x,y,z,X0,Y0,Z0):
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"""
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Single metaball function
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"""
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return 1 / ((x - X0)**2 + (y - Y0)**2 + (z - Z0)**2)
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if __name__ == '__main__':
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main()
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```
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## Local compilation (Linux)
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```bash
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python3 setup.py build_ext --inplace bdist
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```
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pytessel/_version.py,sha256=XBKH8E1LmDxv06U39yqMBbXZapOERFgICEDYZs_kRso,22
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pytessel/isosurface_mesh.cpp,sha256=zoahovBodabqx2zfHkW5xIGBvU84n15tUlsy0yyexp8,6387
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pytessel/__init__.py,sha256=vro51HMaT-ePmW0CgIsDkOgTzutYGB2UgmyV7elT09A,66
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pytessel/pytessel.cpython-311-darwin.so,sha256=OJJd9rYw1-WOVgNN5ZaTfB70P2ebqxECe0XtxnU-1_Y,177136
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pytessel/isosurface_mesh.h,sha256=5n0TJDDlQBcJu9SOxTmW21_g8YEP5Jq9GVrVwMh7IH0,3458
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pytessel/isosurface.h,sha256=dpenMn9T2KuiYw112HuEdIkuh7fqp12FaVJE-00vMsY,5570
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pytessel/scalar_field.cpp,sha256=Ey1LxTnU_Ul40eIZvZZWgTnhJ8P-dP3aK16nEiOEOsk,8818
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pytessel/isosurface.cpp,sha256=Q4a3lqrgnWGfwyZEdUnC6uSCQ46izSO-8SMWrcGTqWg,20664
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pytessel/scalar_field.h,sha256=sfGoX7VtbA6V99dMqLDpYq79xCFFJAKXL1UXd5QBxWs,3593
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pytessel-1.2.4.dist-info/RECORD,,
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pytessel-1.2.4.dist-info/LICENSE,sha256=4cCtcomD2KVzNeUs8QZPGv_R1FQXPYzr0-2LSnK0hwQ,35121
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pytessel-1.2.4.dist-info/WHEEL,sha256=XnRbs9isaZGW7UFs-rmrxXgojUM9oS1_E-0jMiKye-g,109
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pytessel-1.2.4.dist-info/top_level.txt,sha256=QDauMEeJ6MuBmtCTV4HZAr1XodXsUesXTlcImp5LE54,9
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pytessel-1.2.4.dist-info/METADATA,sha256=WZOztzFkTradGU6FaYkKdxLLCmr3QgoykiMfMxQN06Y,5206
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pytessel
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