pysodafair 0.1.62__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (77) hide show
  1. pysoda/__init__.py +0 -0
  2. pysoda/constants.py +3 -0
  3. pysoda/core/__init__.py +10 -0
  4. pysoda/core/dataset_generation/__init__.py +11 -0
  5. pysoda/core/dataset_generation/manifestSession/__init__.py +1 -0
  6. pysoda/core/dataset_generation/manifestSession/manifest_session.py +146 -0
  7. pysoda/core/dataset_generation/upload.py +3951 -0
  8. pysoda/core/dataset_importing/__init__.py +1 -0
  9. pysoda/core/dataset_importing/import_dataset.py +662 -0
  10. pysoda/core/metadata/__init__.py +20 -0
  11. pysoda/core/metadata/code_description.py +109 -0
  12. pysoda/core/metadata/constants.py +32 -0
  13. pysoda/core/metadata/dataset_description.py +188 -0
  14. pysoda/core/metadata/excel_utils.py +41 -0
  15. pysoda/core/metadata/helpers.py +250 -0
  16. pysoda/core/metadata/manifest.py +112 -0
  17. pysoda/core/metadata/manifest_package/__init__.py +2 -0
  18. pysoda/core/metadata/manifest_package/manifest.py +0 -0
  19. pysoda/core/metadata/manifest_package/manifest_import.py +29 -0
  20. pysoda/core/metadata/manifest_package/manifest_writer.py +666 -0
  21. pysoda/core/metadata/performances.py +46 -0
  22. pysoda/core/metadata/resources.py +53 -0
  23. pysoda/core/metadata/samples.py +184 -0
  24. pysoda/core/metadata/sites.py +51 -0
  25. pysoda/core/metadata/subjects.py +172 -0
  26. pysoda/core/metadata/submission.py +91 -0
  27. pysoda/core/metadata/text_metadata.py +47 -0
  28. pysoda/core/metadata_templates/CHANGES +1 -0
  29. pysoda/core/metadata_templates/LICENSE +1 -0
  30. pysoda/core/metadata_templates/README.md +4 -0
  31. pysoda/core/metadata_templates/__init__.py +0 -0
  32. pysoda/core/metadata_templates/code_description.xlsx +0 -0
  33. pysoda/core/metadata_templates/code_parameters.xlsx +0 -0
  34. pysoda/core/metadata_templates/dataset_description.xlsx +0 -0
  35. pysoda/core/metadata_templates/manifest.xlsx +0 -0
  36. pysoda/core/metadata_templates/performances.xlsx +0 -0
  37. pysoda/core/metadata_templates/resources.xlsx +0 -0
  38. pysoda/core/metadata_templates/samples.xlsx +0 -0
  39. pysoda/core/metadata_templates/sites.xlsx +0 -0
  40. pysoda/core/metadata_templates/subjects.xlsx +0 -0
  41. pysoda/core/metadata_templates/subjects_pools_samples_structure.xlsx +0 -0
  42. pysoda/core/metadata_templates/subjects_pools_samples_structure_example.xlsx +0 -0
  43. pysoda/core/metadata_templates/submission.xlsx +0 -0
  44. pysoda/core/permissions/__init__.py +1 -0
  45. pysoda/core/permissions/permissions.py +31 -0
  46. pysoda/core/pysoda/__init__.py +2 -0
  47. pysoda/core/pysoda/soda.py +34 -0
  48. pysoda/core/pysoda/soda_object.py +55 -0
  49. pysoda/core/upload_manifests/__init__.py +1 -0
  50. pysoda/core/upload_manifests/upload_manifests.py +37 -0
  51. pysoda/schema/__init__.py +0 -0
  52. pysoda/schema/code_description.json +629 -0
  53. pysoda/schema/dataset_description.json +295 -0
  54. pysoda/schema/manifest.json +60 -0
  55. pysoda/schema/performances.json +44 -0
  56. pysoda/schema/resources.json +39 -0
  57. pysoda/schema/samples.json +97 -0
  58. pysoda/schema/sites.json +38 -0
  59. pysoda/schema/soda_schema.json +664 -0
  60. pysoda/schema/subjects.json +131 -0
  61. pysoda/schema/submission_schema.json +28 -0
  62. pysoda/utils/__init__.py +9 -0
  63. pysoda/utils/authentication.py +381 -0
  64. pysoda/utils/config.py +68 -0
  65. pysoda/utils/exceptions.py +156 -0
  66. pysoda/utils/logger.py +6 -0
  67. pysoda/utils/metadata_utils.py +74 -0
  68. pysoda/utils/pennsieveAgentUtils.py +11 -0
  69. pysoda/utils/pennsieveUtils.py +118 -0
  70. pysoda/utils/profile.py +28 -0
  71. pysoda/utils/schema_validation.py +133 -0
  72. pysoda/utils/time_utils.py +5 -0
  73. pysoda/utils/upload_utils.py +108 -0
  74. pysodafair-0.1.62.dist-info/METADATA +190 -0
  75. pysodafair-0.1.62.dist-info/RECORD +77 -0
  76. pysodafair-0.1.62.dist-info/WHEEL +4 -0
  77. pysodafair-0.1.62.dist-info/licenses/LICENSE +21 -0
pysoda/schema/code_description.json ADDED
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560
+ "output_parameter_description",
561
+ "output_units"
562
+ ]
563
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564
+ },
565
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567
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568
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570
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571
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572
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573
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574
+ "type": "string"
575
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576
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577
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578
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579
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580
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581
+ },
582
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583
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584
+ },
585
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586
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587
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588
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589
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590
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591
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610
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611
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612
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614
+ "inputs",
615
+ "number_of_outputs",
616
+ "outputs"
617
+ ]
618
+ }
619
+ },
620
+ "required": [
621
+ "input_output_information",
622
+ "basic_information",
623
+ "ten_simple_rules",
624
+ "RRID_term",
625
+ "RRID_identifier",
626
+ "ontology_term",
627
+ "ontology_identifier"
628
+ ]
629
+ }