pyreadstat 1.3.1__cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl

pyreadstat/__init__.py

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+# #############################################################################
+# Copyright 2018 Hoffmann-La Roche
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# #############################################################################
+
+from .pyreadstat import read_sas7bdat, read_xport, read_dta, read_sav, read_por, read_sas7bcat
+from .pyreadstat import write_sav, write_dta, write_xport, write_por
+#from .pyreadstat import set_value_labels, set_catalog_to_sas
+#from .pyreadstat import  set_catalog_to_sas
+from .pyreadstat import read_file_in_chunks, read_file_multiprocessing
+from ._readstat_parser import ReadstatError, metadata_container
+from .pyfunctions import set_value_labels, set_catalog_to_sas
+
+__version__ = "1.3.1"
+

pyreadstat/pyfunctions.py

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+"""
+Functions written in pure python
+"""
+from copy import deepcopy, copy
+import warnings
+
+import narwhals.stable.v2 as nw
+
+# Functions to deal with value labels
+
+def set_value_labels(dataframe, metadata, formats_as_category=True, formats_as_ordered_category=False):
+    """
+    Changes the values in the dataframe according to the value formats in the metadata.
+    It will return a copy of the dataframe. If no appropiate formats were found, the result will be an unchanged copy
+    of the original dataframe.
+
+    Parameters
+    ----------
+        dataframe : pandas dataframe
+            resulting from parsing a file
+        metadata : dictionary
+            resulting from parsing a file
+        formats_as_category : bool, optional
+            defaults to True. If True the variables having formats will be transformed into pandas categories.
+        formats_as_ordered_category : bool, optional
+            defaults to False. If True the variables having formats will be transformed into pandas ordered categories.
+            it has precedence over formats_as_category, meaning if this is True, it will take effect irrespective of
+            the value of formats_as_category.
+
+    Returns
+    -------
+        df_copy : pandas dataframe
+            a copy of the original dataframe with the values changed, if appropiate formats were found, unaltered
+            otherwise
+    """
+
+    df_copy = nw.from_native(dataframe).clone()
+
+    if metadata.value_labels and metadata.variable_to_label:
+        for var_name, label_name in metadata.variable_to_label.items():
+            labels = metadata.value_labels.get(label_name)
+            if labels:
+                labels = deepcopy(labels)
+                if var_name in df_copy.columns:
+                    # unique does not work for polars Object
+                    if not df_copy.implementation.is_pandas() and df_copy[var_name].dtype == nw.Object:
+                        unvals = list(set(df_copy[var_name].to_list()))
+                    else:
+                        unvals = df_copy[var_name].unique()
+                    for uval in unvals:
+                        if uval not in labels:
+                            labels[uval] = uval
+                    # if all values are null, there will be nothing to replace. However we cannot do replace_strict on null dtype, it raises an error
+                    if not df_copy.implementation.is_pandas() and (len(df_copy[var_name])==df_copy[var_name].null_count()):
+                        continue
+                    # replace_strict requires that all the values are in the map. Could not get map_batches or when/then/otherwise to work
+                    elif not df_copy.implementation.is_pandas() and (df_copy[var_name].dtype==nw.Object or not all([type(v)==type(list(labels.values())[0]) for v in labels.values() if v is not None])):
+                        # polars is very difficult to convince to mix strings and numbers, so we have to do it this way
+                        temp = [labels[x] for x in df_copy[var_name]]
+                        newser = nw.new_series(name=var_name, values= temp, dtype=nw.Object, backend=df_copy.implementation) 
+                        df_copy = df_copy.with_columns(newser.alias(var_name))
+                        if formats_as_category or formats_as_ordered_category:
+                            msg = f"You requested formats_as_category=True or formats_as_ordered_category=True, but it was not possible to cast variable '{var_name}' to category"
+                            warnings.warn(msg, RuntimeWarning)
+                            continue
+                    # not sure if we get into this situation ever or what would exactly happen, maybe this is not needed?
+                    elif not df_copy.implementation.is_pandas() and df_copy[var_name].dtype==nw.Unknown:
+                        msg = f"It was not possible to apply value formats to variable '{var_name}' due to unknown/not supported data type"
+                        warnings.warn(msg, RuntimeWarning)
+                        continue
+                    else:
+                        df_copy = df_copy.with_columns(nw.col(var_name).replace_strict(labels))
+                    if formats_as_ordered_category:
+                        categories = list(set(labels.values()))
+                        original_values = list(labels.keys())
+                        original_values.sort()
+                        revdict= dict()
+                        for orival in original_values:
+                            curcat = labels.get(orival)
+                            if not revdict.get(curcat):
+                                revdict[curcat] = orival
+                        categories.sort(key=revdict.get)
+                        df_copy = df_copy.with_columns(nw.col(var_name).cast(nw.Enum(categories)))
+                    elif formats_as_category:
+                        df_copy = df_copy.with_columns(nw.col(var_name).cast(nw.Categorical))
+
+
+    return df_copy.to_native()
+
+def set_catalog_to_sas(sas_dataframe, sas_metadata, catalog_metadata, formats_as_category=True,  
+                       formats_as_ordered_category=False):
+    """
+    Changes the values in the dataframe and sas_metadata according to the formats in the catalog.
+    It will return a copy of the dataframe and metadata. If no appropriate formats were found, the result will
+    be an unchanged copy of the original dataframe.
+
+    Parameters
+    ----------
+        sas_dataframe : pandas dataframe
+            resulting from parsing a sas7bdat file
+        sas_metadata : pyreadstat metadata object
+            resulting from parsing a sas7bdat file
+        catalog_metadata : pyreadstat metadata object
+            resulting from parsing a sas7bcat (catalog) file
+        formats_as_category : bool, optional
+            defaults to True. If True the variables having formats will be transformed into pandas categories.
+        formats_as_ordered_category : bool, optional
+            defaults to False. If True the variables having formats will be transformed into pandas ordered categories.
+            it has precedence over formats_as_category, meaning if this is True, it will take effect irrespective of
+            the value of formats_as_category.
+
+    Returns
+    -------
+        df_copy : pandas dataframe
+            a copy of the original dataframe with the values changed, if appropriate formats were found, unaltered
+            otherwise
+        metadata : dict
+            a copy of the original sas_metadata enriched with catalog information if found, otherwise unaltered
+    """
+
+    if catalog_metadata.value_labels and sas_metadata.variable_to_label:
+        catalog_metadata_copy = deepcopy(catalog_metadata)
+        metadata = deepcopy(sas_metadata)
+        metadata.value_labels = catalog_metadata_copy.value_labels
+        df_copy = set_value_labels(sas_dataframe, metadata, formats_as_category=formats_as_category,
+                                   formats_as_ordered_category=formats_as_ordered_category)
+
+        variable_value_labels = dict()
+        for var_name, var_label in metadata.variable_to_label.items():
+            current_labels = catalog_metadata_copy.value_labels.get(var_label)
+            if current_labels:
+                variable_value_labels[var_name] = current_labels
+        metadata.variable_value_labels = variable_value_labels
+
+    else:
+        #df_copy = sas_dataframe.copy()
+        df_copy = nw.from_native(sas_dataframe).clone().to_native()
+        metadata = deepcopy(sas_metadata)
+
+    return df_copy, metadata
+

pyreadstat/worker.py

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+
+# #############################################################################
+# Copyright 2018 Hoffmann-La Roche
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#   http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# #############################################################################
+
+"""
+Functions to work with multiprocessing
+"""
+
+def worker(inpt):
+    read_function, path, row_offset, row_limit, kwargs = inpt
+    df, meta = read_function(path, row_offset=row_offset, row_limit=row_limit, **kwargs)
+    return df 

pyreadstat-1.3.1.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: pyreadstat
+Version: 1.3.1
+Summary: Reads and Writes SAS, SPSS and Stata files into/from pandas and polars data frames.
+Home-page: https://github.com/Roche/pyreadstat
+Download-URL: https://github.com/Roche/pyreadstat/dist
+Author: Otto Fajardo
+Author-email: pleasecontactviagithub@notvalid.com
+License: Apache-2.0
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Cython
+Classifier: Programming Language :: C
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering
+Classifier: Environment :: Console
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: narwhals>=2.0
+Requires-Dist: numpy
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: download-url
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: requires-dist
+Dynamic: summary
+
+ A Python package to read and write SAS
+(sas7bdat, sas7bcat, xport/xpt), SPSS (sav, zsav, por) and Stata (dta) files into/from pandas and polars data frames. It is a wrapper
+around the C library readstat.<br>
+Please visit out project home page for more information:<br>
+https://github.com/Roche/pyreadstat

pyreadstat-1.3.1.dist-info/RECORD

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+pyreadstat/__init__.py,sha256=v8Bii3pv9gaU6zX6BDQgQHtPLhPxu0RGTJDUtInmPKg,1232
+pyreadstat/_readstat_parser.cpython-314-x86_64-linux-gnu.so,sha256=d7qTAN3c6uFw6s0pwHE_9L3KbGsz8EtIxYFO88M0L34,3089320
+pyreadstat/_readstat_writer.cpython-314-x86_64-linux-gnu.so,sha256=al_wBUYst-qPCGjUM977QMIdkggBHogW56Dg9sJ2Tq0,3607928
+pyreadstat/pyfunctions.py,sha256=JkCsGUT71iLU5onnIhTXzMbzjCjGcAz2HMDB0b3ptIU,7577
+pyreadstat/pyreadstat.cpython-314-x86_64-linux-gnu.so,sha256=uHNYrK0EhU7pVxtod99RdUaTRCfceEJA4Qxg7vSYF54,3221904
+pyreadstat/worker.py,sha256=DHA7KXzZ3KSUSiYrepD7RpABPSLCYDq3-hOcoaFNBaI,972
+pyreadstat-1.3.1.dist-info/METADATA,sha256=SnLBSBGd78hVp0WsWeG787hT5FReEHJmJlqPQjL7ZpQ,1245
+pyreadstat-1.3.1.dist-info/WHEEL,sha256=DMni2HWXXG4oat8Y6bAVuu-xlkB-grHQiqsTu-lLHls,190
+pyreadstat-1.3.1.dist-info/top_level.txt,sha256=7LlluhR4SADp00dJTEVpKMet_Jki7JHA6abJ-wu831E,11
+pyreadstat-1.3.1.dist-info/RECORD,,
+pyreadstat-1.3.1.dist-info/licenses/LICENSE,sha256=Tjohfl1RlkuDoTF5ctnLvkGnr8TU27PEy7PhOHjRz5c,12903

pyreadstat-1.3.1.dist-info/WHEEL

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+Wheel-Version: 1.0
+Generator: setuptools (80.9.0)
+Root-Is-Purelib: false
+Tag: cp314-cp314-manylinux_2_17_x86_64
+Tag: cp314-cp314-manylinux2014_x86_64
+Tag: cp314-cp314-manylinux_2_28_x86_64
+

pyreadstat-1.3.1.dist-info/licenses/LICENSE

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+The pyreadstat package as a whole is distributed under Apache License
+Vesrion 2 (see below).
+
+The pyreadstat package also includes the following open source software
+components:
+
+- ReadStat; https://github.com/WizardMac/ReadStat, distributed under MIT license
+
+
+ReadStat license:
+---------------------------------------------------------------------------
+
+Copyright (c) 2013-2016 Evan Miller (except where otherwise noted)
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.
+
+
+pyreadstat liscence:
+---------------------------------------------------------------------------
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pyreadstat-1.3.1.dist-info/top_level.txt

@@ -0,0 +1 @@
+pyreadstat