pypharm 1.5.2__py3-none-any.whl → 1.6.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- PyPharm/__init__.py +3 -3
- PyPharm/algorithms/country_optimization.py +469 -469
- PyPharm/algorithms/country_optimization_v2.py +330 -330
- PyPharm/algorithms/country_optimization_v3.py +428 -428
- PyPharm/algorithms/genetic_optimization.py +130 -130
- PyPharm/algorithms/gold_digger_optimization.py +126 -126
- PyPharm/constants.py +80 -80
- PyPharm/models/__init__.py +3 -2
- PyPharm/models/compartment_models.py +985 -639
- PyPharm/models/pbpk.py +683 -672
- {pypharm-1.5.2.dist-info → pypharm-1.6.1.dist-info}/METADATA +7 -11
- pypharm-1.6.1.dist-info/RECORD +15 -0
- {pypharm-1.5.2.dist-info → pypharm-1.6.1.dist-info}/WHEEL +1 -1
- PyPharm/country_optimization.py +0 -470
- PyPharm/country_optimization_v2.py +0 -330
- PyPharm/country_optimization_v3.py +0 -426
- PyPharm/genetic_optimization.py +0 -130
- PyPharm/gold_digger_optimization.py +0 -127
- PyPharm/models.py +0 -638
- pypharm-1.5.2.dist-info/RECORD +0 -21
- {pypharm-1.5.2.dist-info → pypharm-1.6.1.dist-info}/top_level.txt +0 -0
PyPharm/constants.py
CHANGED
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@@ -1,81 +1,81 @@
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MODEL_CONST = {
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'human':{
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'adipose': {'V':143, 'Q': 60 * 3.7},
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'bone': {'V':124, 'Q': 60 * 3.6} ,
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'brain': {'V':20.7, 'Q': 60 * 10} ,
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'gut': {'V':23.6, 'Q': 60 * 13} ,
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'heart': {'V':3.8, 'Q': 60 * 2.14},
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'kidney': {'V':4.4, 'Q': 60 * 15.7} ,
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'liver': {'V':24.1, 'Q': 60 * 21} ,
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'lung': {'V':16.7, 'Q': 60 * 71} ,
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'muscle': {'V':429, 'Q': 60 * 10.7} ,
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'pancreas': {'V':1.2, 'Q': 60 * 1.9} ,
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'skin': {'V':111, 'Q': 60 * 4.3} ,
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'spleen': {'V':2.7, 'Q': 60 * 1.1},
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'stomach': {'V':2.2, 'Q': 60 * 0.56},
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'teaster': {'V':0.51, 'Q': 60 * 0.04},
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'arterial_blood': {'V':25.7} ,
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'venous_blood': {'V':51.4}
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},
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'rat':{
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'adipose': {'V':40, 'Q': 60 * 1.6},
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'bone': {'V':53.2, 'Q': 60 * 10.12},
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'brain': {'V':6.8, 'Q': 60 * 5.32} ,
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'gut': {'V':40, 'Q': 60 * 52} ,
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'heart': {'V':3.2, 'Q': 60 * 15.68},
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'kidney': {'V':9.2, 'Q': 60 * 36.92},
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'liver': {'V':41.2, 'Q': 60 * 80} ,
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'lung': {'V':4, 'Q': 60 * 203.2} ,
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'muscle': {'V':487.6, 'Q': 60 * 30} ,
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'pancreas': {'V':5.2, 'Q': 60 * 4} ,
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'skin': {'V':160, 'Q': 60 * 20} ,
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'spleen': {'V':2.4, 'Q': 60 * 5} ,
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'stomach': {'V':4.4, 'Q': 60 * 8.2} ,
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'teaster': {'V':10, 'Q': 60 * 1.8} ,
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'arterial_blood': {'V':22.4} ,
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# 'arterial_blood': {'V':22.4, 'Q': 60 * 10.8} ,
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'venous_blood': {'V':45.2}
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},
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'mouse': {
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'adipose': {'V': 1000 * 1e-3 / 0.02, 'Q': 60 * 4e-5 * 1000 / 0.02},
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'bone': {'V': 1000 * 1.58e-3 / 0.02, 'Q': 60 * 2.53e-4 * 1000 / 0.02},
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'brain': {'V': 1000 * 1.7e-4 / 0.02, 'Q': 60 * 1.3e-4 * 1000 / 0.02},
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'gut': {'V': 1000 * 6.27e-4 / 0.02, 'Q': 60 * 5e-4 * 1000 / 0.02},
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'heart': {'V': 1000 * 9.5e-5 / 0.02, 'Q': 60 * 2.8e-4 * 1000 / 0.02},
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'kidney': {'V': 1000 * 3.4e-4 / 0.02, 'Q': 60 * 1.3e-3 * 1000 / 0.02},
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'liver': {'V': 1000 * 1e-3/ 0.02, 'Q' : 60 * 3.5e-4 * 1000 / 0.02},
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'lung': {'V': 1000 * 1e-4 / 0.02, 'Q': 60 * 5.47e-3 * 1000 / 0.02},
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'muscle': {'V': 1000 * 0.01e-1 / 0.02, 'Q': 60 * 9.1e-4 * 1000 / 0.02},
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'pancreas': {'V': 1000 * 1.3e-4 / 0.02, 'Q': 60 * 5.2e-5 * 1000 / 0.02},
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'skin': {'V': 1000 * 2.9e-3 / 0.02, 'Q': 60 * 4.1e-4 * 1000 / 0.02},
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'spleen': {'V': 1000 * 1e-4 / 0.02, 'Q': 60 * 9e-5 * 1000 / 0.02},
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'stomach': {'V': 1000 * 1.1e-4 / 0.02, 'Q': 60 * 1.1e-4 * 1000 / 0.02},
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'teaster': {'V': 1, 'Q': 1},
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'arterial_blood': {'V': 1000 * 2.28e-4 / 0.02},
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# 'arterial_blood': {'V':22.4, 'Q': 60 * 10.8} ,
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'venous_blood': {'V': 1000 * 5.25e-4 / 0.02}
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}
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}
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class ORGAN_NAMES:
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LUNG = 'lung'
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HEART = 'heart'
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BRAIN = 'brain'
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MUSCLE = 'muscle'
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ADIPOSE = 'adipose'
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SKIN = 'skin'
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BONE = 'bone'
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KIDNEY = 'kidney'
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LIVER = 'liver'
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GUT = 'gut'
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SPLEEN = 'spleen'
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STOMACH = 'stomach'
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PANCREAS = 'pancreas'
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VENOUS = 'venous_blood'
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ARTERIAL = 'arterial_blood'
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class ANIMALS:
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HUMAN = 'human'
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RAT = 'rat'
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MODEL_CONST = {
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'human':{
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'adipose': {'V':143, 'Q': 60 * 3.7},
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'bone': {'V':124, 'Q': 60 * 3.6} ,
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'brain': {'V':20.7, 'Q': 60 * 10} ,
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'gut': {'V':23.6, 'Q': 60 * 13} ,
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'heart': {'V':3.8, 'Q': 60 * 2.14},
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'kidney': {'V':4.4, 'Q': 60 * 15.7} ,
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'liver': {'V':24.1, 'Q': 60 * 21} ,
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10
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'lung': {'V':16.7, 'Q': 60 * 71} ,
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'muscle': {'V':429, 'Q': 60 * 10.7} ,
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'pancreas': {'V':1.2, 'Q': 60 * 1.9} ,
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'skin': {'V':111, 'Q': 60 * 4.3} ,
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'spleen': {'V':2.7, 'Q': 60 * 1.1},
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'stomach': {'V':2.2, 'Q': 60 * 0.56},
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'teaster': {'V':0.51, 'Q': 60 * 0.04},
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'arterial_blood': {'V':25.7} ,
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'venous_blood': {'V':51.4}
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},
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'rat':{
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'adipose': {'V':40, 'Q': 60 * 1.6},
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'bone': {'V':53.2, 'Q': 60 * 10.12},
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'brain': {'V':6.8, 'Q': 60 * 5.32} ,
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'gut': {'V':40, 'Q': 60 * 52} ,
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25
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'heart': {'V':3.2, 'Q': 60 * 15.68},
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'kidney': {'V':9.2, 'Q': 60 * 36.92},
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'liver': {'V':41.2, 'Q': 60 * 80} ,
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'lung': {'V':4, 'Q': 60 * 203.2} ,
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'muscle': {'V':487.6, 'Q': 60 * 30} ,
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'pancreas': {'V':5.2, 'Q': 60 * 4} ,
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'skin': {'V':160, 'Q': 60 * 20} ,
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'spleen': {'V':2.4, 'Q': 60 * 5} ,
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'stomach': {'V':4.4, 'Q': 60 * 8.2} ,
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'teaster': {'V':10, 'Q': 60 * 1.8} ,
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'arterial_blood': {'V':22.4} ,
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# 'arterial_blood': {'V':22.4, 'Q': 60 * 10.8} ,
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'venous_blood': {'V':45.2}
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},
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'mouse': {
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'adipose': {'V': 1000 * 1e-3 / 0.02, 'Q': 60 * 4e-5 * 1000 / 0.02},
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'bone': {'V': 1000 * 1.58e-3 / 0.02, 'Q': 60 * 2.53e-4 * 1000 / 0.02},
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'brain': {'V': 1000 * 1.7e-4 / 0.02, 'Q': 60 * 1.3e-4 * 1000 / 0.02},
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'gut': {'V': 1000 * 6.27e-4 / 0.02, 'Q': 60 * 5e-4 * 1000 / 0.02},
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'heart': {'V': 1000 * 9.5e-5 / 0.02, 'Q': 60 * 2.8e-4 * 1000 / 0.02},
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'kidney': {'V': 1000 * 3.4e-4 / 0.02, 'Q': 60 * 1.3e-3 * 1000 / 0.02},
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'liver': {'V': 1000 * 1e-3/ 0.02, 'Q' : 60 * 3.5e-4 * 1000 / 0.02},
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'lung': {'V': 1000 * 1e-4 / 0.02, 'Q': 60 * 5.47e-3 * 1000 / 0.02},
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'muscle': {'V': 1000 * 0.01e-1 / 0.02, 'Q': 60 * 9.1e-4 * 1000 / 0.02},
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'pancreas': {'V': 1000 * 1.3e-4 / 0.02, 'Q': 60 * 5.2e-5 * 1000 / 0.02},
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'skin': {'V': 1000 * 2.9e-3 / 0.02, 'Q': 60 * 4.1e-4 * 1000 / 0.02},
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'spleen': {'V': 1000 * 1e-4 / 0.02, 'Q': 60 * 9e-5 * 1000 / 0.02},
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'stomach': {'V': 1000 * 1.1e-4 / 0.02, 'Q': 60 * 1.1e-4 * 1000 / 0.02},
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'teaster': {'V': 1, 'Q': 1},
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'arterial_blood': {'V': 1000 * 2.28e-4 / 0.02},
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# 'arterial_blood': {'V':22.4, 'Q': 60 * 10.8} ,
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'venous_blood': {'V': 1000 * 5.25e-4 / 0.02}
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}
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}
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class ORGAN_NAMES:
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LUNG = 'lung'
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HEART = 'heart'
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BRAIN = 'brain'
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MUSCLE = 'muscle'
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ADIPOSE = 'adipose'
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SKIN = 'skin'
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BONE = 'bone'
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KIDNEY = 'kidney'
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LIVER = 'liver'
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GUT = 'gut'
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SPLEEN = 'spleen'
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STOMACH = 'stomach'
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PANCREAS = 'pancreas'
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VENOUS = 'venous_blood'
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ARTERIAL = 'arterial_blood'
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class ANIMALS:
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HUMAN = 'human'
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RAT = 'rat'
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MOUSE = 'mouse'
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PyPharm/models/__init__.py
CHANGED
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from .compartment_models import BaseCompartmentModel, MagicCompartmentModel,
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from .compartment_models import (BaseCompartmentModel, MagicCompartmentModel,
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ReleaseCompartmentModel, TwoSubstancesCompartmentModel)
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from .pbpk import PBPKmod
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