pyopenms 2.3.0__zip → 2.3.0.1__zip

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- version='2.3.0'
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+ version='2.3.0.1'
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+ Metadata-Version: 1.1
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+ Name: pyopenms
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+ Version: 2.3.0.1
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+ Summary: Python wrapper for C++ LCMS library OpenMS
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+ Home-page: http://open-ms.de
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+ Author: Uwe Schmitt
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+ Author-email: uschmitt@mineway.de
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+ License: http://opensource.org/licenses/BSD-3-Clause
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+ Description-Content-Type: UNKNOWN
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+ Description: This package contains Python bindings for a large part of the OpenMS library
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+ for mass spectrometry based proteomics. It thus provides providing facile
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+ access to a feature-rich, open-source algorithm library for mass-spectrometry
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+ based proteomics analysis. These Python bindings allow raw access to the
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+ data-structures and algorithms implemented in OpenMS, specifically those for
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+ file access (mzXML, mzML, TraML, mzIdentML among others), basic signal
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+ processing (smoothing, filtering, de-isotoping and peak-picking) and complex
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+ data analysis (including label-free, SILAC, iTRAQ and SWATH analysis tools).
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+
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+ Please see https://github.com/OpenMS/OpenMS/wiki/pyOpenMS for more information.
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+
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+
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+ Platform: any
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+ Classifier: Development Status :: 4 - Beta
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: BSD License
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+ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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+ Classifier: Topic :: Scientific/Engineering :: Chemistry
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- Metadata-Version: 1.1
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- Name: pyopenms
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- Version: 2.3.0
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- Summary: Python wrapper for C++ LCMS library OpenMS
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- Home-page: http://open-ms.de
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- Author: Uwe Schmitt
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- Author-email: uschmitt@mineway.de
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- License: http://opensource.org/licenses/BSD-3-Clause
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- Description-Content-Type: UNKNOWN
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- Description:
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- .. contents:: **Table of Contents**
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-
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- ------------
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- Introduction
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- ------------
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-
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- This package contains Python bindings for a large part of the OpenMS library
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- (http://www.openms.org) for mass spectrometry based proteomics. It thus
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- provides providing facile access to a feature-rich, open-source algorithm
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- library for mass-spectrometry based proteomics analysis. These Python bindings
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- allow raw access to the data-structures and algorithms implemented in OpenMS,
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- specifically those for file access (mzXML, mzML, TraML, mzIdentML among
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- others), basic signal processing (smoothing, filtering, de-isotoping and
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- peak-picking) and complex data analysis (including label-free, SILAC, iTRAQ and
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- SWATH analysis tools).
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-
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- The pyOpenMS package runs - like OpenMS - on Windows, Linux and OSX.
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-
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- -----------
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- Publication
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- -----------
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-
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- The pyOpenMS bindings are described in the following publication:
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-
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- Rost HL, Schmitt U, Aebersold R and Malmstrom L.
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- pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library.
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- Proteomics. 2014 Jan;14(1):74-7. doi: 10.1002/pmic.201300246.
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-
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- Please also check `the pyOpenMS homepage`_ for updates and links.
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-
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- ------------
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- Installation
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- ------------
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-
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- We provide binary packages for Python 3.4, 3.5 and 3.6 on Windows (64 bit) and
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- Linux (64 bit) as well as Python 2.7 for Linux, which makes the installation
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- very straightforward with pip. For other platforms, please refer to the
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- compilation instructions.
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-
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- Binary installation
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- ===================
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-
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- The current binaries require numpy **1.7.x**. As we distribute the package as
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- binary wheels, you should use *pip* for installation::
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-
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- $ pip install pyopenms
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-
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- Source installation
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- ===================
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-
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- Please use the `the pyOpenMS homepage`_ for instructions on how to build pyOpenMS yourself.
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-
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- ---------------------
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- Questions and Support
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- ---------------------
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-
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- For questions and feature requests, please use `the OpenMS github page`_ which
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- contains a bug tracker, a wiki and describes multiple ways to contact the
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- developers.
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-
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- ------------
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- Testing
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- ------------
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-
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- pyOpenMS provides unittests, they are found under ./pyOpenMS/tests/ and can be
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- executed using nosetests::
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-
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- $ python run_nose.py
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-
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- ------------
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- License
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- ------------
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-
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- pyOpenMS is published under the 3-clause BSD licence, see ./pyOpenMS/License.txt
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-
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- -------------
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- Documentation
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- -------------
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-
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- pyOpenMS follows the `OpenMS documentation`_ very closely. Additionally, there is also a `pyOpenMS
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- Manual <http://proteomics.ethz.ch/pyOpenMS_Manual.pdf>`_ available. The online
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- manual contains a complete record of every wrapped class and function while the
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- documentation of the corresponding class or function can be inferred from the
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- OpenMS online documentation.
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-
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-
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-
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- .. _the pyOpenMS homepage: https://github.com/OpenMS/OpenMS/wiki/pyOpenMS
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- .. _the OpenMS documentation: http://ftp.mi.fu-berlin.de/pub/OpenMS/release-documentation/html/index.html
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- .. _the OpenMS github page: https://github.com/OpenMS/OpenMS/
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-
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-
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- Platform: any
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- Classifier: Development Status :: 4 - Beta
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- Classifier: Intended Audience :: Science/Research
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- Classifier: License :: OSI Approved :: BSD License
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- Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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- Classifier: Topic :: Scientific/Engineering :: Chemistry