pyopenms 2.3.0.2__zip → 2.3.0.3__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/version.py +1 -1
- media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/version.pyc +0 -0
- media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms-2.3.0.3-py2.7.egg-info/PKG-INFO +31 -0
- media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms-2.3.0.2-py2.7.egg-info/PKG-INFO +0 -106
- /media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/{pyopenms-2.3.0.2-py2.7.egg-info → pyopenms-2.3.0.3-py2.7.egg-info}/SOURCES.txt +0 -0
- /media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/{pyopenms-2.3.0.2-py2.7.egg-info → pyopenms-2.3.0.3-py2.7.egg-info}/dependency_links.txt +0 -0
- /media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/{pyopenms-2.3.0.2-py2.7.egg-info → pyopenms-2.3.0.3-py2.7.egg-info}/not-zip-safe +0 -0
- /media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/{pyopenms-2.3.0.2-py2.7.egg-info → pyopenms-2.3.0.3-py2.7.egg-info}/top_level.txt +0 -0
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version='2.3.0.
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version='2.3.0.3'
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media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms-2.3.0.3-py2.7.egg-info/PKG-INFO
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Metadata-Version: 1.1
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Name: pyopenms
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Version: 2.3.0.3
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Summary: Python wrapper for C++ LCMS library OpenMS
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Home-page: http://open-ms.de
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Author: Uwe Schmitt
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Author-email: uschmitt@mineway.de
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License: http://opensource.org/licenses/BSD-3-Clause
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Description-Content-Type: UNKNOWN
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Description: This package contains Python bindings for a large part of the OpenMS library
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for mass spectrometry based proteomics. It thus provides providing facile
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access to a feature-rich, open-source algorithm library for mass-spectrometry
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based proteomics analysis. These Python bindings allow raw access to the
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data-structures and algorithms implemented in OpenMS, specifically those for
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file access (mzXML, mzML, TraML, mzIdentML among others), basic signal
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processing (smoothing, filtering, de-isotoping and peak-picking) and complex
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data analysis (including label-free, SILAC, iTRAQ and SWATH analysis tools).
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You can install pyopenms using::
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pip install pyopenms
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Please see https://github.com/OpenMS/OpenMS/wiki/pyOpenMS for more information.
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Platform: any
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Classifier: Development Status :: 4 - Beta
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: BSD License
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Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Classifier: Topic :: Scientific/Engineering :: Chemistry
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media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms-2.3.0.2-py2.7.egg-info/PKG-INFO
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Metadata-Version: 1.1
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Name: pyopenms
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Version: 2.3.0.2
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Summary: Python wrapper for C++ LCMS library OpenMS
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Home-page: http://open-ms.de
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Author: Uwe Schmitt
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Author-email: uschmitt@mineway.de
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License: http://opensource.org/licenses/BSD-3-Clause
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Description-Content-Type: UNKNOWN
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Description:
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------------
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Introduction
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------------
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This package contains Python bindings for a large part of the OpenMS library
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(http://www.openms.org) for mass spectrometry based proteomics. It thus
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provides providing facile access to a feature-rich, open-source algorithm
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library for mass-spectrometry based proteomics analysis. These Python bindings
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allow raw access to the data-structures and algorithms implemented in OpenMS,
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specifically those for file access (mzXML, mzML, TraML, mzIdentML among
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others), basic signal processing (smoothing, filtering, de-isotoping and
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peak-picking) and complex data analysis (including label-free, SILAC, iTRAQ and
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SWATH analysis tools).
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The pyOpenMS package runs - like OpenMS - on Windows, Linux and OSX.
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-----------
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Publication
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-----------
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The pyOpenMS bindings are described in the following publication:
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Rost HL, Schmitt U, Aebersold R and Malmstrom L.
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pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library.
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Proteomics. 2014 Jan;14(1):74-7. doi: 10.1002/pmic.201300246.
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Please also check `the pyOpenMS homepage`_ for updates and links.
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------------
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Installation
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------------
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We provide binary packages for Python 3.4, 3.5 and 3.6 on Windows (64 bit) and
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Linux (64 bit) as well as Python 2.7 for Linux, which makes the installation
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very straightforward with pip. For other platforms, please refer to the
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compilation instructions.
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Binary installation
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===================
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The current binaries require numpy **1.7.x**. As we distribute the package as
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binary wheels, you should use *pip* for installation::
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$ pip install pyopenms
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Source installation
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===================
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Please use the `the pyOpenMS homepage`_ for instructions on how to build pyOpenMS yourself.
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---------------------
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Questions and Support
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---------------------
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For questions and feature requests, please use `the OpenMS github page`_ which
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contains a bug tracker, a wiki and describes multiple ways to contact the
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developers.
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------------
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Testing
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------------
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pyOpenMS provides unittests, they are found under ./pyOpenMS/tests/ and can be
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executed using nosetests::
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$ python run_nose.py
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------------
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License
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pyOpenMS is published under the 3-clause BSD licence, see ./pyOpenMS/License.txt
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-------------
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Documentation
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pyOpenMS follows the `OpenMS documentation`_ very closely. Additionally, there is also a `pyOpenMS
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Manual <http://proteomics.ethz.ch/pyOpenMS_Manual.pdf>`_ available. The online
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manual contains a complete record of every wrapped class and function while the
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documentation of the corresponding class or function can be inferred from the
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OpenMS online documentation.
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.. _the pyOpenMS homepage: https://github.com/OpenMS/OpenMS/wiki/pyOpenMS
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.. _the OpenMS documentation: http://ftp.mi.fu-berlin.de/pub/OpenMS/release-documentation/html/index.html
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.. _the OpenMS github page: https://github.com/OpenMS/OpenMS/
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Platform: any
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Classifier: Development Status :: 4 - Beta
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: BSD License
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Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Classifier: Topic :: Scientific/Engineering :: Chemistry
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