pyogrio 0.8.0__cp39-cp39-manylinux_2_28_aarch64.whl → 0.9.0__cp39-cp39-manylinux_2_28_aarch64.whl

pyogrio/_io.pyx

@@ -2134,6 +2134,10 @@ cdef create_ogr_dataset_layer(
         if crs is not None:
             try:
                 ogr_crs = create_crs(crs)
+                # force geographic CRS to use lon, lat order and ignore axis order specified by CRS, in order
+                # to correctly write KML and GeoJSON coordinates in correct order
+                OSRSetAxisMappingStrategy(ogr_crs, OAMS_TRADITIONAL_GIS_ORDER)
+
 
             except Exception as exc:
                 if dataset_options != NULL:
@@ -2735,4 +2739,4 @@ cdef create_fields_from_arrow_schema(
                 f"Error while creating field from Arrow for field {i} with name "
                 f"'{get_string(child.name)}' and type {get_string(child.format)}"
                 f"{gdal_msg}."
-            )
+            )

pyogrio/_ogr.pxd

@@ -196,7 +196,10 @@ cdef extern from "ogr_srs_api.h":
     const char*             OSRGetAuthorityName(OGRSpatialReferenceH srs, const char *key)
     const char*             OSRGetAuthorityCode(OGRSpatialReferenceH srs, const char *key)
     OGRErr                  OSRImportFromEPSG(OGRSpatialReferenceH srs, int code)
-
+    ctypedef enum OSRAxisMappingStrategy:
+        OAMS_TRADITIONAL_GIS_ORDER
+        
+    void                    OSRSetAxisMappingStrategy(OGRSpatialReferenceH hSRS, OSRAxisMappingStrategy)
     int                     OSRSetFromUserInput(OGRSpatialReferenceH srs, const char *pszDef)
     void                    OSRSetPROJSearchPaths(const char *const *paths)
     OGRSpatialReferenceH    OSRNewSpatialReference(const char *wkt)

pyogrio/_version.py

@@ -8,11 +8,11 @@ import json
 
 version_json = '''
 {
- "date": "2024-05-06T14:34:51-0700",
+ "date": "2024-06-17T12:28:58-0700",
  "dirty": false,
  "error": null,
- "full-revisionid": "46c35a7e98d85923cfefe73dae7285404e72d9a6",
- "version": "0.8.0"
+ "full-revisionid": "568f87062a65e0452c679624cc33fbf1af535454",
+ "version": "0.9.0"
 }
 '''  # END VERSION_JSON
 

pyogrio/gdal_data/vcpkg.spdx.json

@@ -3,13 +3,13 @@
   "spdxVersion": "SPDX-2.2",
   "dataLicense": "CC0-1.0",
   "SPDXID": "SPDXRef-DOCUMENT",
-  "documentNamespace": "https://spdx.org/spdxdocs/gdal-arm64-linux-dynamic-release-3.8.5-c10232ad-fed1-42c9-bbd9-20d0a8dfc748",
+  "documentNamespace": "https://spdx.org/spdxdocs/gdal-arm64-linux-dynamic-release-3.8.5-c2fccc74-cbd3-4beb-ab1e-71bcca83dad4",
   "name": "gdal:arm64-linux-dynamic-release@3.8.5 58e88ba41cbc169497613684e29b8f1436999df48e1390ff96b0f5feacefd0cd",
   "creationInfo": {
     "creators": [
       "Tool: vcpkg-unknownhash"
     ],
-    "created": "2024-05-04T14:32:24Z"
+    "created": "2024-06-17T19:22:39Z"
   },
   "relationships": [
     {
@@ -153,36 +153,36 @@
   ],
   "files": [
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/vcpkg-cmake-wrapper.cmake",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/fix-gdal-target-interfaces.patch",
       "SPDXID": "SPDXRef-file-0",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "c507eaa077072e9877607fd5f70381eebf19900661e2e1fd099d84c4df1b8c24"
+          "checksumValue": "9dbe9d5e0dbc3a21370bb3560aa32811d10cc0b19e4b6833cd7258699d206215"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/vcpkg.json",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/vcpkg-cmake-wrapper.cmake",
       "SPDXID": "SPDXRef-file-1",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "15039815ee85e9996bda2f7cb66eb87de8b544bcafba85f2518ba1b3f28c9fd5"
+          "checksumValue": "c507eaa077072e9877607fd5f70381eebf19900661e2e1fd099d84c4df1b8c24"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/cmake-project-include.cmake",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/portfile.cmake",
       "SPDXID": "SPDXRef-file-2",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "60c0f79155c78ec0ec4ccdc77e00f4613ae4630c6697f51f884bf8f979a48593"
+          "checksumValue": "7e5f1f6c6f1f420b994e149d8a31e1e31e23492a881ce29b3c30307ab28f2f92"
         }
       ],
       "licenseConcluded": "NOASSERTION",
@@ -201,24 +201,24 @@
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     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/fix-gdal-target-interfaces.patch",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/target-is-valid.patch",
       "SPDXID": "SPDXRef-file-4",
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+          "checksumValue": "6a369356c57860f97bd756d3604e7219774e2bfe5c74e5e0178496fad253900f"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/target-is-valid.patch",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/libkml.patch",
       "SPDXID": "SPDXRef-file-5",
       "checksums": [
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           "algorithm": "SHA256",
-          "checksumValue": "6a369356c57860f97bd756d3604e7219774e2bfe5c74e5e0178496fad253900f"
+          "checksumValue": "fe888df8a7c9e468cdd87640c025f48f165d5264af1fa20604bd60859e6f000f"
         }
       ],
       "licenseConcluded": "NOASSERTION",
@@ -237,24 +237,24 @@
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/portfile.cmake",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/cmake-project-include.cmake",
       "SPDXID": "SPDXRef-file-7",
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-          "checksumValue": "7e5f1f6c6f1f420b994e149d8a31e1e31e23492a881ce29b3c30307ab28f2f92"
+          "checksumValue": "60c0f79155c78ec0ec4ccdc77e00f4613ae4630c6697f51f884bf8f979a48593"
         }
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       "licenseConcluded": "NOASSERTION",
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     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/libkml.patch",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/gdal/ea4d3f8cb9ab32d885ac60b974421a604fdbcc87/vcpkg.json",
       "SPDXID": "SPDXRef-file-8",
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           "algorithm": "SHA256",
-          "checksumValue": "fe888df8a7c9e468cdd87640c025f48f165d5264af1fa20604bd60859e6f000f"
+          "checksumValue": "15039815ee85e9996bda2f7cb66eb87de8b544bcafba85f2518ba1b3f28c9fd5"
         }
       ],
       "licenseConcluded": "NOASSERTION",

pyogrio/geopandas.py

@@ -87,6 +87,7 @@ def read_dataframe(
     sql_dialect=None,
     fid_as_index=False,
     use_arrow=None,
+    on_invalid="raise",
     arrow_to_pandas_kwargs=None,
     **kwargs,
 ):
@@ -197,6 +198,15 @@ def read_dataframe(
         installed). When enabled, this provides a further speed-up.
         Defaults to False, but this default can also be globally overridden
         by setting the ``PYOGRIO_USE_ARROW=1`` environment variable.
+    on_invalid : str, optional (default: "raise")
+
+        - **raise**: an exception will be raised if a WKB input geometry is
+          invalid.
+        - **warn**: a warning will be raised and invalid WKB geometries will be
+          returned as ``None``.
+        - **ignore**: invalid WKB geometries will be returned as ``None``
+          without a warning.
+
     arrow_to_pandas_kwargs : dict, optional (default: None)
         When `use_arrow` is True, these kwargs will be passed to the `to_pandas`_
         call for the arrow to pandas conversion.
@@ -234,7 +244,6 @@ def read_dataframe(
 
     import pandas as pd
     import geopandas as gp
-    from geopandas.array import from_wkb
     import shapely  # if geopandas is present, shapely is expected to be present
 
     path_or_buffer = _stringify_path(path_or_buffer)
@@ -292,10 +301,10 @@ def read_dataframe(
             if PANDAS_GE_15 and wkb_values.dtype != object:
                 # for example ArrowDtype will otherwise create numpy array with pd.NA
                 wkb_values = wkb_values.to_numpy(na_value=None)
-            df["geometry"] = from_wkb(wkb_values, crs=meta["crs"])
+            df["geometry"] = shapely.from_wkb(wkb_values, on_invalid=on_invalid)
             if force_2d:
                 df["geometry"] = shapely.force_2d(df["geometry"])
-            return gp.GeoDataFrame(df, geometry="geometry")
+            return gp.GeoDataFrame(df, geometry="geometry", crs=meta["crs"])
         else:
             return df
 
@@ -315,9 +324,9 @@ def read_dataframe(
     if geometry is None or not read_geometry:
         return df
 
-    geometry = from_wkb(geometry, crs=meta["crs"])
+    geometry = shapely.from_wkb(geometry, on_invalid=on_invalid)
 
-    return gp.GeoDataFrame(df, geometry=geometry)
+    return gp.GeoDataFrame(df, geometry=geometry, crs=meta["crs"])
 
 
 # TODO: handle index properly

pyogrio/proj_data/vcpkg.spdx.json

@@ -3,13 +3,13 @@
   "spdxVersion": "SPDX-2.2",
   "dataLicense": "CC0-1.0",
   "SPDXID": "SPDXRef-DOCUMENT",
-  "documentNamespace": "https://spdx.org/spdxdocs/proj-arm64-linux-dynamic-release-9.4.0-edc92951-66a1-436f-8bb7-8e2d8412fdc0",
+  "documentNamespace": "https://spdx.org/spdxdocs/proj-arm64-linux-dynamic-release-9.4.0-a773fd97-43cc-4c8a-9729-d80537cf95e7",
   "name": "proj:arm64-linux-dynamic-release@9.4.0 2390d4ac09577aae072602ffa5778fb45348916244670786c8fb79324999d80b",
   "creationInfo": {
     "creators": [
       "Tool: vcpkg-unknownhash"
     ],
-    "created": "2024-05-04T14:23:19Z"
+    "created": "2024-06-17T19:13:34Z"
   },
   "relationships": [
     {
@@ -135,60 +135,60 @@
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/vcpkg.json",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/portfile.cmake",
       "SPDXID": "SPDXRef-file-1",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "d31d1d3beb5ef0890e4b5db1ee5b72a925a58aa53bfaee688d4b5af1cea2bba4"
+          "checksumValue": "58b4048cfc81891c1e32e41bc00b52ea7ae2821bd577b46ab63d2c962ef8747d"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/usage",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/fix-win-output-name.patch",
       "SPDXID": "SPDXRef-file-2",
       "checksums": [
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           "algorithm": "SHA256",
-          "checksumValue": "26169363c27e71a44cba9d703b22bbd13c191ab5e2d0612b3dd35c735c971fe6"
+          "checksumValue": "706e536cfe9a90c1b071ab5b00932fa96bb35c67fcb0f96c0fc4feb7c0b44011"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/fix-win-output-name.patch",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/usage",
       "SPDXID": "SPDXRef-file-3",
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           "algorithm": "SHA256",
-          "checksumValue": "706e536cfe9a90c1b071ab5b00932fa96bb35c67fcb0f96c0fc4feb7c0b44011"
+          "checksumValue": "26169363c27e71a44cba9d703b22bbd13c191ab5e2d0612b3dd35c735c971fe6"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
     },
     {
-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/portfile.cmake",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/fix-proj4-targets-cmake.patch",
       "SPDXID": "SPDXRef-file-4",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "58b4048cfc81891c1e32e41bc00b52ea7ae2821bd577b46ab63d2c962ef8747d"
+          "checksumValue": "d76e1d419d3367dda3381fd11a637f3465bc838d611fa8ceaca20048c1b3cd6e"
         }
       ],
       "licenseConcluded": "NOASSERTION",
       "copyrightText": "NOASSERTION"
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-      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/fix-proj4-targets-cmake.patch",
+      "fileName": ".//opt/vcpkg/buildtrees/versioning_/versions/proj/62e9ace469641b907291184ebc7e76d96f629881/vcpkg.json",
       "SPDXID": "SPDXRef-file-5",
       "checksums": [
         {
           "algorithm": "SHA256",
-          "checksumValue": "d76e1d419d3367dda3381fd11a637f3465bc838d611fa8ceaca20048c1b3cd6e"
+          "checksumValue": "d31d1d3beb5ef0890e4b5db1ee5b72a925a58aa53bfaee688d4b5af1cea2bba4"
         }
       ],
       "licenseConcluded": "NOASSERTION",

pyogrio/tests/test_geopandas_io.py

@@ -6,7 +6,7 @@ import locale
 import numpy as np
 import pytest
 
-from pyogrio import list_layers, read_info, __gdal_version__
+from pyogrio import list_layers, list_drivers, read_info, __gdal_version__
 from pyogrio.errors import DataLayerError, DataSourceError, FeatureError, GeometryError
 from pyogrio.geopandas import read_dataframe, write_dataframe, PANDAS_GE_20
 from pyogrio.raw import (
@@ -1641,6 +1641,37 @@ def test_write_geometry_z_types_auto(
     assert_geodataframe_equal(gdf, result_gdf)
 
 
+@pytest.mark.parametrize(
+    "on_invalid, message",
+    [
+        (
+            "warn",
+            "Invalid WKB: geometry is returned as None. IllegalArgumentException: "
+            "Invalid number of points in LinearRing found 2 - must be 0 or >=",
+        ),
+        ("raise", "Invalid number of points in LinearRing found 2 - must be 0 or >="),
+        ("ignore", None),
+    ],
+)
+def test_read_invalid_shp(data_dir, use_arrow, on_invalid, message):
+    if on_invalid == "raise":
+        handler = pytest.raises(shapely.errors.GEOSException, match=message)
+    elif on_invalid == "warn":
+        handler = pytest.warns(match=message)
+    elif on_invalid == "ignore":
+        handler = contextlib.nullcontext()
+    else:
+        raise ValueError(f"unknown value for on_invalid: {on_invalid}")
+
+    with handler:
+        df = read_dataframe(
+            data_dir / "poly_not_enough_points.shp.zip",
+            use_arrow=use_arrow,
+            on_invalid=on_invalid,
+        )
+        df.geometry.isnull().all()
+
+
 def test_read_multisurface(data_dir, use_arrow):
     if use_arrow:
         with pytest.raises(shapely.errors.GEOSException):
@@ -2067,3 +2098,77 @@ def test_non_utf8_encoding_shapefile_sql(tmp_path, use_arrow):
     )
     assert actual.columns[0] == mandarin
     assert actual[mandarin].values[0] == mandarin
+
+
+@pytest.mark.requires_arrow_write_api
+def test_write_kml_file_coordinate_order(tmp_path, use_arrow):
+    # confirm KML coordinates are written in lon, lat order even if CRS axis specifies otherwise
+    points = [Point(10, 20), Point(30, 40), Point(50, 60)]
+    gdf = gp.GeoDataFrame(geometry=points, crs="EPSG:4326")
+    output_path = tmp_path / "test.kml"
+    write_dataframe(
+        gdf, output_path, layer="tmp_layer", driver="KML", use_arrow=use_arrow
+    )
+
+    gdf_in = read_dataframe(output_path, use_arrow=use_arrow)
+
+    assert np.array_equal(gdf_in.geometry.values, points)
+
+    if "LIBKML" in list_drivers():
+        # test appending to the existing file only if LIBKML is available
+        # as it appears to fall back on LIBKML driver when appending.
+        points_append = [Point(70, 80), Point(90, 100), Point(110, 120)]
+        gdf_append = gp.GeoDataFrame(geometry=points_append, crs="EPSG:4326")
+
+        write_dataframe(
+            gdf_append,
+            output_path,
+            layer="tmp_layer",
+            driver="KML",
+            use_arrow=use_arrow,
+            append=True,
+        )
+        # force_2d used to only compare xy geometry as z-dimension is undesirably
+        # introduced when the kml file is over-written.
+        gdf_in_appended = read_dataframe(
+            output_path, use_arrow=use_arrow, force_2d=True
+        )
+
+        assert np.array_equal(gdf_in_appended.geometry.values, points + points_append)
+
+
+@pytest.mark.requires_arrow_write_api
+def test_write_geojson_rfc7946_coordinates(tmp_path, use_arrow):
+    points = [Point(10, 20), Point(30, 40), Point(50, 60)]
+    gdf = gp.GeoDataFrame(geometry=points, crs="EPSG:4326")
+    output_path = tmp_path / "test.geojson"
+    write_dataframe(
+        gdf,
+        output_path,
+        layer="tmp_layer",
+        driver="GeoJSON",
+        RFC7946=True,
+        use_arrow=use_arrow,
+    )
+
+    gdf_in = read_dataframe(output_path, use_arrow=use_arrow)
+
+    assert np.array_equal(gdf_in.geometry.values, points)
+
+    # test appending to the existing file
+
+    points_append = [Point(70, 80), Point(90, 100), Point(110, 120)]
+    gdf_append = gp.GeoDataFrame(geometry=points_append, crs="EPSG:4326")
+
+    write_dataframe(
+        gdf_append,
+        output_path,
+        layer="tmp_layer",
+        driver="GeoJSON",
+        RFC7946=True,
+        use_arrow=use_arrow,
+        append=True,
+    )
+
+    gdf_in_appended = read_dataframe(output_path, use_arrow=use_arrow)
+    assert np.array_equal(gdf_in_appended.geometry.values, points + points_append)

pyogrio/tests/test_path.py

@@ -35,6 +35,7 @@ def change_cwd(path):
         ("/home/user/data.gpkg", "/home/user/data.gpkg"),
         (r"C:\User\Documents\data.gpkg", r"C:\User\Documents\data.gpkg"),
         ("file:///home/user/data.gpkg", "/home/user/data.gpkg"),
+        ("/home/folder # with hash/data.gpkg", "/home/folder # with hash/data.gpkg"),
         # cloud URIs
         ("https://testing/data.gpkg", "/vsicurl/https://testing/data.gpkg"),
         ("s3://testing/data.gpkg", "/vsis3/testing/data.gpkg"),

pyogrio/util.py

@@ -115,7 +115,7 @@ def _parse_uri(path: str):
     scheme : str
         URI scheme such as "https" or "zip+s3".
     """
-    parts = urlparse(path)
+    parts = urlparse(path, allow_fragments=False)
 
     # if the scheme is not one of GDAL's supported schemes, return raw path
     if parts.scheme and not all(p in SCHEMES for p in parts.scheme.split("+")):

{pyogrio-0.8.0.dist-info → pyogrio-0.9.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pyogrio
-Version: 0.8.0
+Version: 0.9.0
 Summary: Vectorized spatial vector file format I/O using GDAL/OGR
 Home-page: https://github.com/geopandas/pyogrio
 Author: Brendan C. Ward

{pyogrio-0.8.0.dist-info → pyogrio-0.9.0.dist-info}/RECORD

@@ -1,238 +1,239 @@
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