pyobo 0.12.1__py3-none-any.whl → 0.12.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,873 +0,0 @@
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- {
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- "blocklists": {
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- "full": [
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- ":",
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- "ADL:FTT",
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- "BGEE:curator",
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- "BSPO:PATO_mtg_2009",
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- "Bgee:curator",
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- "BioGRID:curators",
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- "CGP:curators",
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- "CS:0",
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- "CTD:curators",
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- "ClinGen:AminoacidopathyGeneCurationPanel",
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- "Codex:\\:260",
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- "Compound:eye",
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- "DDB:pf",
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- "EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html",
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- "Europe:\\:260",
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- "FBC:Autogenerated",
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- "Follicular:fluid",
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- "GO:curator",
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- "GOC:TermGenie",
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- "GOC:go_curators",
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- "GOC:mtg_cell_cycle",
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- "GOC:mtg_kidney_jan10",
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- "GOC:pamgo_curators",
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- "GROUP:OBI",
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- "Getty:TGN",
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- "HPO:ICE",
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- "HPO:PCS",
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- "Harvard-Oxford:Atlas",
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- "ICD9CM_2005:<new dbxref>",
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- "IEDB:BP",
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- "KEGG",
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- "Lamina:propria",
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- "Lymph:node",
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- "MIM:OMIM",
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- "MeSH:MeSH",
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- "NIFSTD:NeuroNames_abbrevSource",
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- "NIST",
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- "PLATY:A.H.L.Fischer",
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- "POC:curators",
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- "Pituitary:gland",
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- "PomBane:vw",
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- "RGD:www.rgd.mcw.edu",
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- "SGD:curators",
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- "STRUCTURE_Formula",
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- "South:Korea",
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- "TAIR:TED",
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- "TS:0",
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- "Tail:fat",
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- "URL:http\\://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1007&context=onlinedictinvertzoology",
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- "United:Kingdom",
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- "United:States",
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- "XX:-new-dbxref-",
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- "XX:<new dbxref>",
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- "XX:<new dbxref>",
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- "XX:<new xref>",
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- "XX:newdbxref",
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- "XX:www.ensembl.org/info/genome/variation/predicted_data.html#consequences",
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- "ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd",
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- "group:OBI",
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- "http://edamontology.org",
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- "http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf",
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- "http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences",
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- "https://www.researchgate.net/scientific-contributions/Simon-Reeve-2162827703"
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- ],
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- "prefix": [
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- "DDB:",
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- "FBC:",
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- "IUPAC:",
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- "Image:",
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- "MONDORULE:",
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- "NCBITaxon_Union",
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- "OBO_SF2_PECO",
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- "PECO_GIT",
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- "PERSON",
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- "PO_GIT:",
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- "RSC:",
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- "STRUCTURE_ChemicalName_IUPAC",
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- "STRUCTURE_Formula",
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- "SUBMITTER",
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- "TEMP:",
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- "http://wiki.geneontology.org/index.php",
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- "stedman",
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- "synonym:",
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- "urn:lsid\\:globalnames.org\\:index\\:"
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- ],
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- "resource_full": {
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- "ceph": [
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- "Nidamental:gland"
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- ],
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- "envo": [
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- "Genomes:fissure",
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- "INTERNAS:WS2",
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- "METAR:FZRA",
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- "NASA:earthrealm",
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- "USGS:SDTS",
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- "Uranium:mining"
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- ],
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- "fbbt": [
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- "FlyPNS:PNSdescription.html#dh1",
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- "FlyPNS:PNSdescription.html#lbd",
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- "FlyPNS:PNSdescription.html#ltd",
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- "FlyPNS:PNSdescription0.html",
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- "FlyPNS:PNSnomenclature.html"
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- ],
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- "hp": [
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- "HPO:curators",
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- "HPO:probinson",
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- "HPO:sdoelken",
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- "LMU:mgriese",
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- "PhenoTips:CHum",
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- "Sanford:krageth",
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- "UToronto:chum"
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- ],
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- "idomal": [
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- "EM:EM",
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- "KL:KL",
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- "PT:PT"
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- ],
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- "ino": [
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- "LifO:0000005"
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- ],
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- "miro": [
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- "NS:NS",
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- "Walter_Reed:taxonomy"
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- ],
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- "mpath": [
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- "Pathbase: Curation",
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- "Pathbase: Pathology Committee"
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- ],
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- "ms": [
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- "value-type:xsd\\:string"
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- ],
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- "po": [
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- "NIG:Yukiko_Yamazaki",
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- "NYBG:Brandon_Sinn",
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- "NYBG:Dario_Cavaliere",
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- "POC:Maria_Alejandra_Gandolfo"
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- ],
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- "to": [
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- "Gramene:cwt6",
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- "Gramene:pankaj_jaiswal",
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- "scale:6"
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- ],
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- "tto": [
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- "TTOCurator:CavenderAndCoburn1992",
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- "TTOCurator:Conway_etal_2008",
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- "TTOCurator:Vari1995"
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- ],
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- "uberon": [
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- "Dermal:denticle",
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- "Duct:(anatomy)",
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- "Follicular:antrum",
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- "Leydig's:organ",
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- "OBOL:accepted",
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- "OBOL:automatic",
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- "Organ:(anatomy)",
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- "Pinhole:eye",
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- "Serous:membrane",
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- "Vaginal:fornix"
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- ]
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- },
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- "resource_prefix": {
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- "cellosaurus": [
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- "CCLV",
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- "CCTCC:",
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- "CancerTools:",
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- "Cosmic-CLP:",
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- "FCDI",
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- "IARC_TP53:",
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- "IBRC",
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- "ISCR",
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- "IZSLER",
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- "Innoprot:",
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- "KCB:",
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- "LINCS_HMS",
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- "MCCL",
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- "MCCL:MCC:",
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- "NCBI_Iran",
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- "NCI-DTP",
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- "NISES",
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- "PharmacoDB:",
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- "RSCB",
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- "Rockland:",
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- "SKY/M-FISH/CGH"
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- ],
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- "cido": [
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- "https://www.nmpa.gov.cn"
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- ],
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- "cl": [
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- "WikipediaVersioned"
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- ],
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- "duo": [
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- "topic:"
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- ],
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- "efo": [
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- "BilaDO:",
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- "Germplasm:",
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- "OGES:"
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- ],
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- "ehdaa": [
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- "synonym:"
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- ],
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- "envo": [
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- "IUCN-PACS:",
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- "SPIRE:",
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- "TODO^^^",
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- "http://www.britannica.com"
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- ],
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- "fbbt": [
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- "FlyPNS:PNS",
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- "VFB_vol:",
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- "larvalbrain_axon_tract:",
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- "larvalbrain_neuropil:"
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- ],
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- "hao": [
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- "DUMMY_TYPDEF:"
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- ],
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- "iceo": [
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- "OTCS:"
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- ],
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- "idomal": [
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- "IRAC:",
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- "MOSBP"
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- ],
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- "iobc": [
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- "detail?JGLOBAL:ID="
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- ],
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- "mco": [
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- "colombos:"
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- ],
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- "mod": [
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- "Remap:",
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- "UnMod:",
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- "UniMo:"
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- ],
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- "mondo": [
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- "ICD10EXP:",
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- "url:https\\://rarediseases.info.nih.gov"
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- ],
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- "oba": [
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- "AUTO:patterns"
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- ],
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- "ogg": [
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- "IMGT/GENE-DB:"
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- ],
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- "pato": [
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- "ilxtr:"
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- ],
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- "plana": [
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- "NIF:Subcellular\\:sao",
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- "Optic:"
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- ],
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- "po": [
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- "CO_125:",
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- "FNA:",
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- "GO_GIT",
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- "Maize",
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- "OBO-SF2_PO:",
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- "OBO-SF_PO:",
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- "OBOS_SF_PO:",
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- "OBO_PO_SF:",
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- "OBO_SF3_PO:",
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- "OB_SF2_PO:",
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- "OB_SF_PO:",
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- "PO_REF",
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- "PlantSystematics_image_archive:",
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- "SOY:",
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- "TAIR:"
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- ],
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- "pr": [
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- "HIstome_ptm_Hs:",
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- "ImmPort:",
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- "TLR:"
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- ],
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- "to": [
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- "GCP:GCP_",
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- "GIT_TO",
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- "OBO_S2F_TO",
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- "TO_GIT"
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- ],
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- "tto": [
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- "CASGEN:"
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- ],
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- "uberon": [
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- "ABA:",
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- "ANISEED:",
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- "BILS:",
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- "BM:",
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- "BSA:",
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- "GAID:",
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- "MAP:",
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- "OGEM:",
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- "OpenCyc:",
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- "XtroDO:"
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- ],
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- "vo": [
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- "NCBITaxon_VO"
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- ],
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- "wb": [
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- "WBPaper:"
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- ]
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- },
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- "suffix": [
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- ".jpg",
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- ".pdf",
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- ".png",
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- ".svg"
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- ]
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- },
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- "rewrites": {
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- "full": {
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- "ABBREVIATION": "omo:0003000",
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- "BSPO:cjm": "orcid:0000-0002-6601-2165",
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- "BSPO:mah": "orcid:0000-0003-4148-4606",
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- "CHEBI:133245 MetaCyc:quercetin 3-rhamnoside-7-rhamnoside": "CHEBI:133245",
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- "CHEBI:16531 MetaCyc:renillar luciferin": "CHEBI:16531",
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- "CHEBI:49553 PDBeChem:Copper(II) chloride": "CHEBI:49553",
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- "CHEBI:77450 MetaCyc:dicarboxylic acid monoamide \"SUBMITTER\"": "CHEBI:77450",
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- "CHEBI:84990 MetaCyc:<locant>gamma</locant>-carboxy-<stereo>L</stereo>-glutamate residue \"SUBMITTER\"": "CHEBI:84990",
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- "DD:pg": "orcid:0000-0003-1813-6857",
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- "DDBB:pg": "orcid:0000-0003-1813-6857",
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- "DDD:pg": "orcid:0000-0003-1813-6857",
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- "DDb:pg": "orcid:0000-0003-1813-6857",
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- "FOBI_050089": "FOBI:050089",
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- "FOBI_050091": "FOBI:050091",
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- "GIOC:vw": "GOC:vw",
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- "GOC:MAH": "orcid:0000-0003-4148-4606",
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- "HAO:attached_to": "ro:0002371",
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- "HPO:SKOEHLER": "orcid:0000-0002-5316-1399",
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- "HPO:skoehler": "orcid:0000-0002-5316-1399",
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- "LIPIDMAPSLMFA01030141": "LIPIDMAPS:LMFA01030141",
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- "LIPIDMAPSLMFA01030152": "LIPIDMAPS:LMFA01030152",
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- "MimicDB:KatalinParej": "orcid:0000-0002-2567-6061",
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- "OBO_REL2:has_role": "ro:0000087",
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- "OBO_REL:adjacent_to": "ro:0002220",
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- "OBO_REL:has_participant": "ro:0000057",
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- "OBO_REL:has_quality": "bfo:0000086",
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- "OBO_REL:has_role": "ro:0000087",
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- "OBO_REL:has_vector": "ro:0002460",
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- "OBO_REL:inheres_in": "ro:0004096",
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- "OBO_REL:is_a": "rdfs:subClassOf",
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- "OBO_REL:located_in": "ro:0001025",
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- "OBO_REL:location_of": "ro:0001015",
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- "OBO_REL:part_of": "bfo:0000050",
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- "OBO_REL:participates_in": "ro:0000056",
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- "OBO_REL:preceded_by": "bfo:0000062",
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- "OBO_REL:precedes": "bfo:0000063",
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- "OBO_REL:proper_part_of": "bfo:0000050",
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- "OBO_REL:transformation_of": "ro:0002494",
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- "PATOC:CJM": "orcid:0000-0002-6601-2165",
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- "PATOC:MAH": "orcid:0000-0003-4148-4606",
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- "PHI-base:AlayneCuzick": "orcid:0000-0001-8941-3984",
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- "PMI:17498297": "PMID:17498297",
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- "POMBASE:mah": "orcid:0000-0003-4148-4606",
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- "PomBase\\:mah": "orcid:0000-0003-4148-4606",
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- "Property:P1659": "wikidata:P1659",
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- "RO:has_part": "bfo:0000051",
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- "RO:part_of": "BFO:0000050",
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- "SBN:9780070316607": "ISBN:9780070316607",
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- "SIB:PG": "orcid:0000-0003-1813-6857",
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- "SIB:PG xsd:string": "orcid:0000-0003-1813-6857",
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- "SNOMEDCT274897005": "SNOMEDCT:274897005",
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- "UBERON:cjm": "orcid:0000-0002-6601-2165",
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- "bearer:of": "RO:0000053",
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- "broadMatch": "skos:broadMatch",
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- "connected_to": "ro:0002170",
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- "created:by": "oboinowl:created_by",
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- "created_by": "oboinowl:created_by",
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- "creation:date": "oboinowl:creation_date",
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- "creation_date": "oboinowl:creation_date",
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- "curator_notes": "iao:0000232",
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- "dc-contributor": "dc:contributor",
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- "dc-creator": "dc:creator",
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- "dc-description": "dc:description",
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- "dc-license": "dc:license",
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- "dc-title": "dc:title",
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- "definition:citation": "obo:efo#definition_citation",
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- "depicted:by": "foaf:depicted_by",
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- "depicted_by": "foaf:depicted_by",
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- "develops_from": "ro:0002202",
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- "dph:GOC": "orcid:0000-0001-7476-6306",
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- "editor_note": "oboinowl:editor_note",
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- "ends_at_start_of": "ro:0002593",
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- "exactMatch": "skos:exactMatch",
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- "excluded_from_qc_check": "obo:mondo#excluded_from_qc_check",
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- "excluded_subClassOf": "obo:mondo#excluded_subClassOf",
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- "gro:partOf": "BFO:0000050",
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- "gwas:trait": "obo:efo#gwas_trait",
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- "has:input": "RO:0002233",
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- "has:output": "RO:0002234",
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- "hasBroadSynonym": "oboinowl:hasBroadSynonym",
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- "hasExactSynonym": "oboinowl:hasExactSynonym",
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- "hasNarrowSynonym": "oboinowl:hasNarrowSynonym",
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- "hasRelatedSynonym": "oboinowl:hasRelatedSynonym",
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- "has_part": "bfo:0000051",
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- "http://creativecommons.org/licenses/by/3.0/": "spdx:CC-BY-3.0",
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- "http://creativecommons.org/licenses/by/4.0/": "spdx:CC-BY-4.0",
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- "http://creativecommons.org/publicdomain/zero/1.0/": "spdx:CC0-1.0",
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- "http://example.com/bfo-spec-label": "bfo:0000179",
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- "http://purl.obolibrary.org/obo/NCBITaxon#_species_group": "debio:0000024",
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- "http://purl.obolibrary.org/obo/OBO_REL#_agent_in": "sio:000063",
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- "http://purl.obolibrary.org/obo/OBO_REL#_bearer_of": "ro:0000053",
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- "http://purl.obolibrary.org/obo/OBO_REL#_contained_in": "ro:0001018",
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- "http://purl.obolibrary.org/obo/OBO_REL#_derived_into": "sio:000245",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_agent": "sio:000139",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_function": "ro:0000085",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_improper_part": "bfo:0000051",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_integral_part": "bfo:0000051",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_proper_part": "bfo:0000051",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_quality": "bfo:0000086",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_role": "ro:0000087",
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- "http://purl.obolibrary.org/obo/OBO_REL#_has_vector": "ro:0002460",
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- "http://purl.obolibrary.org/obo/OBO_REL#_improper_part_of": "bfo:0000050",
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- "http://purl.obolibrary.org/obo/OBO_REL#_instance_of": "rdf:type",
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- "http://purl.obolibrary.org/obo/OBO_REL#_integral_part_of": "bfo:0000050",
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- "http://purl.obolibrary.org/obo/OBO_REL#_part_of": "bfo:0000050",
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- "http://purl.obolibrary.org/obo/OBO_REL#_proper_part_of": "bfo:0000050",
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- "http://purl.obolibrary.org/obo/OBO_REL#_realized_as": "bfo:0000054",
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- "http://purl.obolibrary.org/obo/OBO_REL#_transformed_into": "sio:000657",
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- "http://purl.obolibrary.org/obo/RO#_is_a": "rdfs:subClassOf",
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- "http://purl.obolibrary.org/obo/TEMP#agent_in": "sio:000063",
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- "http://purl.obolibrary.org/obo/TEMP#bearer_of": "ro:0000053",
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- "http://purl.obolibrary.org/obo/TEMP#happens_during": "ro:0002092",
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- "http://purl.obolibrary.org/obo/TEMP#has_role": "ro:0000087",
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- "http://purl.obolibrary.org/obo/TEMP#is_a": "rdfs:subClassOf",
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- "http://purl.obolibrary.org/obo/TEMP#only_in_taxon": "ro:0002160",
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- "http://purl.obolibrary.org/obo/TEMP#output_of": "ro:0002353",
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- "http://purl.obolibrary.org/obo/TEMP#part_of": "bfo:0000050",
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- "http://purl.obolibrary.org/obo/TEMP#participates_in": "ro:0000056",
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- "http://purl.obolibrary.org/obo/TEMP#preceded_by": "bfo:0000062",
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- "http://purl.obolibrary.org/obo/TEMP#precedes": "bfo:0000063",
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- "http://purl.obolibrary.org/obo/TEMP#realized_by": "bfo:0000054",
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- "http://purl.obolibrary.org/obo/activates": "ro:0002213",
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- "http://purl.obolibrary.org/obo/bearer_of": "ro:0000053",
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- "http://purl.obolibrary.org/obo/bspo#parallel_to": "pato:0002272",
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- "http://purl.obolibrary.org/obo/caloha-reqs-vetted#PLURAL": "omo:0003004",
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- "http://purl.obolibrary.org/obo/chebi#INN": "omo:0003010",
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- "http://purl.obolibrary.org/obo/chebi#IUPAC_NAME": "debio:0000026",
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- "http://purl.obolibrary.org/obo/chebi#has_functional_parent": "debio:0000015",
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- "http://purl.obolibrary.org/obo/chebi#has_parent_hydride": "debio:0000014",
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- "http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of": "debio:0000011",
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- "http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of": "debio:0000010",
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- "http://purl.obolibrary.org/obo/chebi#is_enantiomer_of": "debio:0000012",
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- "http://purl.obolibrary.org/obo/chebi#is_substituent_group_from": "debio:0000027",
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- "http://purl.obolibrary.org/obo/chebi#is_tautomer_of": "debio:0000013",
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- "http://purl.obolibrary.org/obo/chebi/charge": "debio:0000017",
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- "http://purl.obolibrary.org/obo/chebi/formula": "debio:0000018",
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- "http://purl.obolibrary.org/obo/chebi/inchi": "debio:0000020",
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- "http://purl.obolibrary.org/obo/chebi/inchikey": "debio:0000021",
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- "http://purl.obolibrary.org/obo/chebi/mass": "debio:0000019",
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- "http://purl.obolibrary.org/obo/chebi/monoisotopicmass": "debio:0000016",
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- "http://purl.obolibrary.org/obo/chebi/smiles": "debio:0000022",
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- "http://purl.obolibrary.org/obo/chmo#isDefinedBy": "rdfs:isDefinedBy",
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- "http://purl.obolibrary.org/obo/cl#LATIN": "omo:0003011",
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- "http://purl.obolibrary.org/obo/cl#PLURAL": "omo:0003004",
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763
- "os:": "owlstar:"
764
- },
765
- "biomodels.teddy": {
766
- "TR:": "biomodels.teddy:"
767
- },
768
- "caloha": {
769
- "UBERON: BIRNLEX:": "birnlex:"
770
- },
771
- "cellosaurus": {
772
- "PubChem_Cell_line:CVCL_": "cellosaurus:",
773
- "pgx:CVCL_": "cellosaurus:"
774
- },
775
- "chebi": {
776
- "DrugBank:DBSALT": "drugbank.salt:DBSALT"
777
- },
778
- "chmo": {
779
- "Orange:": "orangebook:",
780
- "Orange: ": "orangebook:"
781
- },
782
- "classyfire": {
783
- "LIPIDMAPS:": "lipidmaps:LM"
784
- },
785
- "doid": {
786
- "MIM:PS": "omim.ps:"
787
- },
788
- "ehdaa2": {
789
- "CS": "carnegie.stage:"
790
- },
791
- "emapa": {
792
- "TS:": "theiler:"
793
- },
794
- "enm": {
795
- "Thesaurus:C": "NCIT:C"
796
- },
797
- "idocovid19": {
798
- "UniProtKN:": "uniprot:"
799
- },
800
- "idomal": {
801
- "http://purl.org/obo/owl/PO\\:PO_": "PO:"
802
- },
803
- "ito": {
804
- "format:": "edam.format:",
805
- "operation:": "edam.operation:",
806
- "topic:": "edam.topic:"
807
- },
808
- "mcro": {
809
- "format:": "edam.format:",
810
- "operation:": "edam.operation:",
811
- "topic:": "edam.topic:"
812
- },
813
- "mdm": {
814
- "drugbank:DB:": "drugbank:DB"
815
- },
816
- "ncro": {
817
- "miRBase:MIPF": "mirbase.family:MIPF",
818
- "mirbase:MIMAT": "mirbase.mature:MIMAT"
819
- },
820
- "phipo": {
821
- "created:by": "dcterms:creator",
822
- "created:date": "dcterms:created",
823
- "creation:date": "dcterms:created"
824
- },
825
- "pr": {
826
- "OMA:": "uniprot:",
827
- "iPTMnet:": "uniprot:"
828
- },
829
- "pw": {
830
- "KEGG:": "kegg.pathway:",
831
- "PID:": "pid.pathway:"
832
- },
833
- "senso": {
834
- "odo:SENSO_": "senso:"
835
- },
836
- "sio": {
837
- "ns2:": "skos:"
838
- },
839
- "srao": {
840
- "topic:": "edam.topic:"
841
- },
842
- "t4fs": {
843
- "TF4S:": "t4fs:"
844
- },
845
- "uniprot.disease": {
846
- "http://purl.obolibrary.org/obo/TEMP#": "uniprot.disease:"
847
- },
848
- "uniprot.location": {
849
- "http://purl.obolibrary.org/obo/TEMP#": "uniprot.location:"
850
- },
851
- "worldavatar.kin": {
852
- "OntoKin:": "worldavatar.kin:"
853
- },
854
- "xlmod": {
855
- "CID_Fragment:": "obo:xlmod#CID_Fragment",
856
- "baseSpecificities:": "obo:xlmod#baseSpecificities",
857
- "bridgeFormula:": "obo:xlmod#bridgeFormula",
858
- "deadEndFormula:": "obo:xlmod#deadEndFormula",
859
- "doubletDeltaMass:": "obo:xlmod#doubletDeltaMass",
860
- "hydrophilicPEGchain:": "obo:xlmod#hydrophilicPEGchain",
861
- "maxAbsorption:": "obo:xlmod#maxAbsorption",
862
- "monoIsotopicMass:": "obo:xlmod#monoIsotopicMass",
863
- "reactionSites:": "obo:xlmod#reactionSites",
864
- "reporterMass:": "obo:xlmod#reporterMass",
865
- "secondaryBaseSpecificities:": "obo:xlmod#secondaryBaseSpecificities",
866
- "secondarySpecificities:": "obo:xlmod#secondarySpecificities",
867
- "spacerLength:": "obo:xlmod#spacerLength",
868
- "specificities:": "obo:xlmod#specificities",
869
- "waveLengthRange:": "obo:xlmod#waveLengthRange"
870
- }
871
- }
872
- }
873
- }