pyobo 0.11.2__py3-none-any.whl → 0.12.0__py3-none-any.whl

pyobo/identifier_utils/preprocessing.json

@@ -0,0 +1,812 @@
+{
+  "blacklists": {
+    "full": [
+      ":",
+      "ADL:FTT",
+      "Bgee:curator",
+      "BioGRID:curators",
+      "CGP:curators",
+      "CS:0",
+      "CTD:curators",
+      "ClinGen:AminoacidopathyGeneCurationPanel",
+      "Codex:\\:260",
+      "Compound:eye",
+      "DDB:pf",
+      "EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html",
+      "Europe:\\:260",
+      "FBC:Autogenerated",
+      "Follicular:fluid",
+      "GOC:TermGenie",
+      "GOC:go_curators",
+      "GOC:mtg_kidney_jan10",
+      "GOC:pamgo_curators",
+      "GROUP:OBI",
+      "Getty:TGN",
+      "HPO:ICE",
+      "HPO:PCS",
+      "Harvard-Oxford:Atlas",
+      "ICD9CM_2005:<new dbxref>",
+      "IEDB:BP",
+      "KEGG",
+      "Lamina:propria",
+      "Lymph:node",
+      "NIFSTD:NeuroNames_abbrevSource",
+      "NIST",
+      "PLATY:A.H.L.Fischer",
+      "POC:curators",
+      "Pituitary:gland",
+      "PomBane:vw",
+      "PomBase\\:mah",
+      "STRUCTURE_Formula",
+      "South:Korea",
+      "TAIR:TED",
+      "TS:0",
+      "Tail:fat",
+      "URL:http\\://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1007&context=onlinedictinvertzoology",
+      "United:Kingdom",
+      "United:States",
+      "XX:-new-dbxref-",
+      "XX:<new dbxref>",
+      "XX:<new dbxref>",
+      "XX:<new xref>",
+      "XX:newdbxref",
+      "XX:www.ensembl.org/info/genome/variation/predicted_data.html#consequences",
+      "ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.1.xsd",
+      "group:OBI",
+      "http://edamontology.org",
+      "http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf",
+      "http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences",
+      "https://www.researchgate.net/scientific-contributions/Simon-Reeve-2162827703"
+    ],
+    "prefix": [
+      "DDB:",
+      "FBC:",
+      "IUPAC:",
+      "Image:",
+      "MONDORULE:",
+      "NCBITaxon_Union",
+      "OBO_SF2_PECO",
+      "PECO_GIT",
+      "PERSON",
+      "PO_GIT:",
+      "RSC:",
+      "STRUCTURE_ChemicalName_IUPAC",
+      "STRUCTURE_Formula",
+      "SUBMITTER",
+      "TEMP:",
+      "stedman",
+      "synonym:"
+    ],
+    "resource_full": {
+      "ceph": [
+        "Nidamental:gland"
+      ],
+      "envo": [
+        "Genomes:fissure",
+        "INTERNAS:WS2",
+        "METAR:FZRA",
+        "NASA:earthrealm",
+        "USGS:SDTS",
+        "Uranium:mining"
+      ],
+      "fbbt": [
+        "FlyPNS:PNSdescription.html#dh1",
+        "FlyPNS:PNSdescription.html#lbd",
+        "FlyPNS:PNSdescription.html#ltd",
+        "FlyPNS:PNSdescription0.html",
+        "FlyPNS:PNSnomenclature.html"
+      ],
+      "hp": [
+        "HPO:curators",
+        "HPO:probinson",
+        "HPO:sdoelken",
+        "LMU:mgriese",
+        "PhenoTips:CHum",
+        "Sanford:krageth",
+        "UToronto:chum"
+      ],
+      "idomal": [
+        "EM:EM",
+        "KL:KL",
+        "PT:PT"
+      ],
+      "ino": [
+        "LifO:0000005"
+      ],
+      "miro": [
+        "NS:NS",
+        "Walter_Reed:taxonomy"
+      ],
+      "mpath": [
+        "Pathbase: Curation",
+        "Pathbase: Pathology Committee"
+      ],
+      "ms": [
+        "value-type:xsd\\:string"
+      ],
+      "po": [
+        "NIG:Yukiko_Yamazaki",
+        "NYBG:Brandon_Sinn",
+        "NYBG:Dario_Cavaliere",
+        "POC:Maria_Alejandra_Gandolfo"
+      ],
+      "to": [
+        "Gramene:cwt6",
+        "Gramene:pankaj_jaiswal",
+        "scale:6"
+      ],
+      "tto": [
+        "TTOCurator:CavenderAndCoburn1992",
+        "TTOCurator:Conway_etal_2008",
+        "TTOCurator:Vari1995"
+      ],
+      "uberon": [
+        "Dermal:denticle",
+        "Duct:(anatomy)",
+        "Follicular:antrum",
+        "Leydig's:organ",
+        "OBOL:accepted",
+        "OBOL:automatic",
+        "Organ:(anatomy)",
+        "Pinhole:eye",
+        "Serous:membrane",
+        "Vaginal:fornix"
+      ]
+    },
+    "resource_prefix": {
+      "cellosaurus": [
+        "CCLV",
+        "CCTCC:",
+        "CancerTools:",
+        "Cosmic-CLP:",
+        "FCDI",
+        "IARC_TP53:",
+        "IBRC",
+        "ISCR",
+        "IZSLER",
+        "Innoprot:",
+        "KCB:",
+        "LINCS_HMS",
+        "MCCL",
+        "MCCL:MCC:",
+        "NCBI_Iran",
+        "NCI-DTP",
+        "NISES",
+        "PharmacoDB:",
+        "RSCB",
+        "Rockland:",
+        "SKY/M-FISH/CGH"
+      ],
+      "cido": [
+        "https://www.nmpa.gov.cn"
+      ],
+      "cl": [
+        "WikipediaVersioned"
+      ],
+      "duo": [
+        "topic:"
+      ],
+      "efo": [
+        "BilaDO:",
+        "Germplasm:",
+        "OGES:"
+      ],
+      "ehdaa": [
+        "synonym:"
+      ],
+      "envo": [
+        "IUCN-PACS:",
+        "SPIRE:",
+        "TODO^^^",
+        "http://www.britannica.com"
+      ],
+      "fbbt": [
+        "FlyPNS:PNS",
+        "VFB_vol:",
+        "larvalbrain_axon_tract:",
+        "larvalbrain_neuropil:"
+      ],
+      "hao": [
+        "DUMMY_TYPDEF:"
+      ],
+      "iceo": [
+        "OTCS:"
+      ],
+      "idomal": [
+        "IRAC:",
+        "MOSBP"
+      ],
+      "iobc": [
+        "detail?JGLOBAL:ID="
+      ],
+      "mco": [
+        "colombos:"
+      ],
+      "mod": [
+        "Remap:",
+        "UnMod:",
+        "UniMo:"
+      ],
+      "mondo": [
+        "ICD10EXP:",
+        "url:https\\://rarediseases.info.nih.gov"
+      ],
+      "oba": [
+        "AUTO:patterns"
+      ],
+      "ogg": [
+        "IMGT/GENE-DB:"
+      ],
+      "pato": [
+        "ilxtr:"
+      ],
+      "plana": [
+        "NIF:Subcellular\\:sao",
+        "Optic:"
+      ],
+      "po": [
+        "CO_125:",
+        "FNA:",
+        "GO_GIT",
+        "Maize",
+        "OBO-SF2_PO:",
+        "OBO-SF_PO:",
+        "OBOS_SF_PO:",
+        "OBO_PO_SF:",
+        "OBO_SF3_PO:",
+        "OB_SF2_PO:",
+        "OB_SF_PO:",
+        "PO_REF",
+        "PlantSystematics_image_archive:",
+        "SOY:",
+        "TAIR:"
+      ],
+      "pr": [
+        "HIstome_ptm_Hs:",
+        "ImmPort:",
+        "TLR:"
+      ],
+      "to": [
+        "GCP:GCP_",
+        "GIT_TO",
+        "OBO_S2F_TO",
+        "TO_GIT"
+      ],
+      "tto": [
+        "CASGEN:"
+      ],
+      "uberon": [
+        "ABA:",
+        "ANISEED:",
+        "BILS:",
+        "BM:",
+        "BSA:",
+        "GAID:",
+        "MAP:",
+        "OGEM:",
+        "OpenCyc:",
+        "XtroDO:"
+      ],
+      "vo": [
+        "NCBITaxon_VO"
+      ],
+      "wb": [
+        "WBPaper:"
+      ]
+    },
+    "suffix": [
+      ".jpg",
+      ".pdf",
+      ".png",
+      ".svg"
+    ]
+  },
+  "rewrites": {
+    "full": {
+      "OBO_REL:is_a": "rdfs:subClassOf",
+      ":has_start_point": "has_start_point",
+      "ABBREVIATION": "omo:0003000",
+      "CHEBI:133245 MetaCyc:quercetin 3-rhamnoside-7-rhamnoside": "CHEBI:133245",
+      "CHEBI:16531 MetaCyc:renillar luciferin": "CHEBI:16531",
+      "CHEBI:49553 PDBeChem:Copper(II) chloride": "CHEBI:49553",
+      "CHEBI:77450 MetaCyc:dicarboxylic acid monoamide \"SUBMITTER\"": "CHEBI:77450",
+      "CHEBI:84990 MetaCyc:<locant>gamma</locant>-carboxy-<stereo>L</stereo>-glutamate residue \"SUBMITTER\"": "CHEBI:84990",
+      "DD:pg": "orcid:0000-0003-1813-6857",
+      "DDBB:pg": "orcid:0000-0003-1813-6857",
+      "DDD:pg": "orcid:0000-0003-1813-6857",
+      "DDb:pg": "orcid:0000-0003-1813-6857",
+      "FOBI_050089": "FOBI:050089",
+      "FOBI_050091": "FOBI:050091",
+      "GIOC:vw": "GOC:vw",
+      "GOC:MAH": "orcid:0000-0003-4148-4606",
+      "HPO:SKOEHLER": "orcid:0000-0002-5316-1399",
+      "HPO:skoehler": "orcid:0000-0002-5316-1399",
+      "LIPIDMAPSLMFA01030141": "LIPIDMAPS:LMFA01030141",
+      "LIPIDMAPSLMFA01030152": "LIPIDMAPS:LMFA01030152",
+      "MimicDB:KatalinParej": "orcid:0000-0002-2567-6061",
+      "OBO_REL2:has_role": "ro:0000087",
+      "PATOC:CJM": "orcid:0000-0002-6601-2165",
+      "PATOC:MAH": "orcid:0000-0003-4148-4606",
+      "PHI-base:AlayneCuzick": "orcid:0000-0001-8941-3984",
+      "PMI:17498297": "PMID:17498297",
+      "Property:P1659": "wikidata:P1659",
+      "SBN:9780070316607": "ISBN:9780070316607",
+      "SIB:PG": "orcid:0000-0003-1813-6857",
+      "SIB:PG xsd:string": "orcid:0000-0003-1813-6857",
+      "SNOMEDCT274897005": "SNOMEDCT:274897005",
+      "UBERON:cjm": "orcid:0000-0002-6601-2165",
+      "\\:has_start_point": "has_start_point",
+      "bearer:of": "RO:0000053",
+      "broadMatch": "skos:broadMatch",
+      "connected_to": "ro:0002170",
+      "created:by": "oboinowl:created_by",
+      "created_by": "oboinowl:created_by",
+      "creation:date": "oboinowl:creation_date",
+      "creation_date": "oboinowl:creation_date",
+      "curator_notes": "iao:0000232",
+      "dc-contributor": "dc:contributor",
+      "dc-creator": "dc:creator",
+      "dc-description": "dc:description",
+      "dc-license": "dc:license",
+      "dc-title": "dc:title",
+      "definition:citation": "obo:efo#definition_citation",
+      "depicted:by": "foaf:depicted_by",
+      "depicted_by": "foaf:depicted_by",
+      "develops_from": "ro:0002202",
+      "dph:GOC": "orcid:0000-0001-7476-6306",
+      "editor_note": "oboinowl:editor_note",
+      "ends_at_start_of": "ro:0002593",
+      "exactMatch": "skos:exactMatch",
+      "excluded_from_qc_check": "obo:mondo#excluded_from_qc_check",
+      "excluded_subClassOf": "obo:mondo#excluded_subClassOf",
+      "gro:partOf": "BFO:0000050",
+      "gwas:trait": "obo:efo#gwas_trait",
+      "has:input": "RO:0002233",
+      "has:output": "RO:0002234",
+      "hasBroadSynonym": "oboinowl:hasBroadSynonym",
+      "hasExactSynonym": "oboinowl:hasExactSynonym",
+      "hasNarrowSynonym": "oboinowl:hasNarrowSynonym",
+      "hasRelatedSynonym": "oboinowl:hasRelatedSynonym",
+      "has_part": "bfo:0000051",
+      "has_start_point:": "has_start_point",
+      "http://creativecommons.org/licenses/by/3.0/": "spdx:CC-BY-3.0",
+      "http://creativecommons.org/licenses/by/4.0/": "spdx:CC-BY-4.0",
+      "http://creativecommons.org/publicdomain/zero/1.0/": "spdx:CC0-1.0",
+      "http://example.com/bfo-spec-label": "bfo:0000179",
+      "http://purl.obolibrary.org/obo/NCBITaxon#_species_group": "debio:0000024",
+      "http://purl.obolibrary.org/obo/OBO_REL#_agent_in": "sio:000063",
+      "http://purl.obolibrary.org/obo/OBO_REL#_bearer_of": "ro:0000053",
+      "http://purl.obolibrary.org/obo/OBO_REL#_contained_in": "ro:0001018",
+      "http://purl.obolibrary.org/obo/OBO_REL#_derived_into": "sio:000245",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_agent": "sio:000139",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_function": "ro:0000085",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_improper_part": "bfo:0000051",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_integral_part": "bfo:0000051",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_proper_part": "bfo:0000051",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_quality": "bfo:0000086",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_role": "ro:0000087",
+      "http://purl.obolibrary.org/obo/OBO_REL#_has_vector": "ro:0002460",
+      "http://purl.obolibrary.org/obo/OBO_REL#_improper_part_of": "bfo:0000050",
+      "http://purl.obolibrary.org/obo/OBO_REL#_instance_of": "rdf:type",
+      "http://purl.obolibrary.org/obo/OBO_REL#_integral_part_of": "bfo:0000050",
+      "http://purl.obolibrary.org/obo/OBO_REL#_part_of": "bfo:0000050",
+      "http://purl.obolibrary.org/obo/OBO_REL#_proper_part_of": "bfo:0000050",
+      "http://purl.obolibrary.org/obo/OBO_REL#_realized_as": "bfo:0000054",
+      "http://purl.obolibrary.org/obo/OBO_REL#_transformed_into": "sio:000657",
+      "http://purl.obolibrary.org/obo/RO#_is_a": "rdfs:subClassOf",
+      "http://purl.obolibrary.org/obo/TEMP#agent_in": "sio:000063",
+      "http://purl.obolibrary.org/obo/TEMP#bearer_of": "ro:0000053",
+      "http://purl.obolibrary.org/obo/TEMP#happens_during": "ro:0002092",
+      "http://purl.obolibrary.org/obo/TEMP#has_role": "ro:0000087",
+      "http://purl.obolibrary.org/obo/TEMP#is_a": "rdfs:subClassOf",
+      "http://purl.obolibrary.org/obo/TEMP#only_in_taxon": "ro:0002160",
+      "http://purl.obolibrary.org/obo/TEMP#output_of": "ro:0002353",
+      "http://purl.obolibrary.org/obo/TEMP#part_of": "bfo:0000050",
+      "http://purl.obolibrary.org/obo/TEMP#participates_in": "ro:0000056",
+      "http://purl.obolibrary.org/obo/TEMP#preceded_by": "bfo:0000062",
+      "http://purl.obolibrary.org/obo/TEMP#precedes": "bfo:0000063",
+      "http://purl.obolibrary.org/obo/TEMP#realized_by": "bfo:0000054",
+      "http://purl.obolibrary.org/obo/activates": "ro:0002213",
+      "http://purl.obolibrary.org/obo/bearer_of": "ro:0000053",
+      "http://purl.obolibrary.org/obo/bspo#parallel_to": "pato:0002272",
+      "http://purl.obolibrary.org/obo/caloha-reqs-vetted#PLURAL": "omo:0003004",
+      "http://purl.obolibrary.org/obo/chebi#INN": "omo:0003010",
+      "http://purl.obolibrary.org/obo/chebi#IUPAC_NAME": "debio:0000026",
+      "http://purl.obolibrary.org/obo/chebi#has_functional_parent": "debio:0000015",
+      "http://purl.obolibrary.org/obo/chebi#has_parent_hydride": "debio:0000014",
+      "http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of": "debio:0000011",
+      "http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of": "debio:0000010",
+      "http://purl.obolibrary.org/obo/chebi#is_enantiomer_of": "debio:0000012",
+      "http://purl.obolibrary.org/obo/chebi#is_substituent_group_from": "debio:0000027",
+      "http://purl.obolibrary.org/obo/chebi#is_tautomer_of": "debio:0000013",
+      "http://purl.obolibrary.org/obo/chebi/charge": "debio:0000017",
+      "http://purl.obolibrary.org/obo/chebi/formula": "debio:0000018",
+      "http://purl.obolibrary.org/obo/chebi/inchi": "debio:0000020",
+      "http://purl.obolibrary.org/obo/chebi/inchikey": "debio:0000021",
+      "http://purl.obolibrary.org/obo/chebi/mass": "debio:0000019",
+      "http://purl.obolibrary.org/obo/chebi/monoisotopicmass": "debio:0000016",
+      "http://purl.obolibrary.org/obo/chebi/smiles": "debio:0000022",
+      "http://purl.obolibrary.org/obo/chmo#isDefinedBy": "rdfs:isDefinedBy",
+      "http://purl.obolibrary.org/obo/cl#LATIN": "omo:0003011",
+      "http://purl.obolibrary.org/obo/cl#PLURAL": "omo:0003004",
+      "http://purl.obolibrary.org/obo/cl#abbreviation": "omo:0003000",
+      "http://purl.obolibrary.org/obo/emapa#ends_at": "ro:0002493",
+      "http://purl.obolibrary.org/obo/emapa#is_a": "rdfs:subClassOf",
+      "http://purl.obolibrary.org/obo/emapa#starts_at": "ro:0002489",
+      "http://purl.obolibrary.org/obo/envo#PLURAL": "omo:0003004",
+      "http://purl.obolibrary.org/obo/envo#common_name": "omo:0003003",
+      "http://purl.obolibrary.org/obo/fbbt#FORMULA": "debio:0000018",
+      "http://purl.obolibrary.org/obo/fbbt#INN": "omo:0003010",
+      "http://purl.obolibrary.org/obo/fbbt#IUPAC_NAME": "debio:0000026",
+      "http://purl.obolibrary.org/obo/fbbt#InChI": "debio:0000020",
+      "http://purl.obolibrary.org/obo/fbbt#InChIKey": "debio:0000021",
+      "http://purl.obolibrary.org/obo/fbbt#SMILES": "debio:0000022",
+      "http://purl.obolibrary.org/obo/fbbt#develops_directly_from": "ro:0002207",
+      "http://purl.obolibrary.org/obo/fbbt#has_function_in": "ro:0002216",
+      "http://purl.obolibrary.org/obo/fbbt#has_synaptic_terminals_of": "ro:0002006",
+      "http://purl.obolibrary.org/obo/foaf_depicted_by": "foaf:depicted_by",
+      "http://purl.obolibrary.org/obo/fovt#ABBREVIATION": "omo:0003000",
+      "http://purl.obolibrary.org/obo/fovt#DUBIOUS": "omo:0003002",
+      "http://purl.obolibrary.org/obo/fovt#PLURAL": "omo:0003004",
+      "http://purl.obolibrary.org/obo/fovt#isDefinedBy": "rdfs:isDefinedBy",
+      "http://purl.obolibrary.org/obo/fypo#seeAlso": "rdf:seeAlso",
+      "http://purl.obolibrary.org/obo/go#results_in": "sio:001156",
+      "http://purl.obolibrary.org/obo/has_role": "ro:0000087",
+      "http://purl.obolibrary.org/obo/hp#layperson": "omo:0003003",
+      "http://purl.obolibrary.org/obo/hp#obsolete_synonym": "omo:0003008",
+      "http://purl.obolibrary.org/obo/hp#uk_spelling": "omo:0003005",
+      "http://purl.obolibrary.org/obo/inheres_in": "ro:0004096",
+      "http://purl.obolibrary.org/obo/mi#RESID-misnomer": "omo:0003007",
+      "http://purl.obolibrary.org/obo/mi#isDefinedBy ": "rdfs:isDefinedBy",
+      "http://purl.obolibrary.org/obo/mondo#AMBIGUOUS": "omo:0003001",
+      "http://purl.obolibrary.org/obo/mondo#DUBIOUS": "omo:0003002",
+      "http://purl.obolibrary.org/obo/mondo#broadMatch": "skos:broadMatch",
+      "http://purl.obolibrary.org/obo/mondo#closeMatch": "skos:closeMatch",
+      "http://purl.obolibrary.org/obo/mondo#exactMatch": "skos:exactMatch",
+      "http://purl.obolibrary.org/obo/mondo#narrowMatch": "skos:narrowMatch",
+      "http://purl.obolibrary.org/obo/mondo#relatedMatch": "skos:relatedMatch",
+      "http://purl.obolibrary.org/obo/mpath#is_a": "rdfs:subClassOf",
+      "http://purl.obolibrary.org/obo/nbo#has_participant": "ro:0000057",
+      "http://purl.obolibrary.org/obo/nbo#is_about": "iao:0000136",
+      "http://purl.obolibrary.org/obo/ncbitaxon#acronym": "omo:0003000",
+      "http://purl.obolibrary.org/obo/ncbitaxon#genbank_acronym": "omo:0003000",
+      "http://purl.obolibrary.org/obo/ncbitaxon#genbank_common_name": "omo:0003003",
+      "http://purl.obolibrary.org/obo/ncbitaxon#has_rank": "debio:0000023",
+      "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#common_name": "omo:0003003",
+      "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim#has_rank": "debio:0000023",
+      "http://purl.obolibrary.org/obo/obo#_PATO_0000047": "pato:0000047",
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+      "https://creativecommons.org/licenses/by/3.0/": "spdx:CC-BY-3.0",
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+      "part:of": "BFO:0000050",
+      "part_of": "bfo:0000050",
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+      "vocab:crossSpeciesExactMatch": "semapv:crossSpeciesExactMatch",
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+      "ATCC number: ": "ATCC:",
+      "ATTC: ": "ATCC:",
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+      "FLOPO_": "flopo:",
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+      "From_Merriam-Webster's_Online_Dictionary_at_www.Merriam-Webster.com:http://www.m-w.com/cgi-bin/dictionary?book=Dictionary&va=": "merriamwebster:",
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+      "KCB:KCB ": "KCB:",
+      "KEGG COMPOUND": "KEGG.COMPOUND",
+      "KEGG DRUG": "KEGG.DRUG",
+      "LIPID MAPS:": "LIPIDMAPS:",
+      "MONDOLEX:": "MONDO:",
+      "MedlinePlus: ": "MedlinePlus:",
+      "MicrO.owl/MICRO:": "MICRO:",
+      "MicrO.owl/TEMP:": "MICRO:",
+      "MicrO.owl/Temp:": "MICRO:",
+      "MicrO.owl/temp:": "MICRO:",
+      "NCBI:NBK": "ncbibook:",
+      "NCBI:txid": "NCBITaxon:",
+      "NIFSTD:birnlex": "neurolex:birnlex",
+      "NIFSTD:nifext_": "neurolex:nifext_",
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+      "NIFSTD:sao": "SAO:",
+      "NIF_Subcellular:FMA_": "FMA:",
+      "NIF_Subcellular:birnlex": "neurolex:birnlex",
+      "NIF_Subcellular:nlx": "neurolex:nlx",
+      "NIF_Subcellular:nlx_subcell_": "nif.sub:",
+      "NIF_Subcellular:sao": "SAO:",
+      "NIST Chemistry WebBook": "NIST",
+      "NSH:D0": "MESH:D0",
+      "OGI.owl:": "ogi:",
+      "OMIMl:": "OMIM:",
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+      "PDR:PMID:": "pubmed:",
+      "PMID: ": "PMID:",
+      "SNOMEDCT: ": "SNOMEDCT:",
+      "TKG:TKG ": "TKG:",
+      "TS-": "caloha:",
+      "UMLS CUI:": "UMLS:",
+      "URL: ": "URL:",
+      "URL: http\\://": "http://",
+      "URL:http\\://": "http://",
+      "URL:http\\://en.wikipedia.org/wiki/": "wikipedia.en:",
+      "UniProt: \"": "uniprot:",
+      "Unimod: \"Unimod:": "unimod:",
+      "VFB:FBbt_": "FBbt:",
+      "WIKI:https\\://en.wikipedia.org/wiki/": "wikipedia.en:",
+      "Wikipeda:": "wikipedia:",
+      "cancercelllines:CVCL_": "cellosaurus:CVCL_",
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+      "has:": "has_",
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+      "http://orcid.org/": "orcid:",
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+      "odo:MOSAIC_": "mosaic:",
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+      "ontology:ONTIE_": "ontie:",
+      "ontology:PMR.owl#": "pmr:",
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+      "resource:CHEMINF_": "cheminf:",
+      "resource:SIO_": "SIO:",
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+      "snap#": "snap:",
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+      "url: \"https://en.wikipedia.org/wiki/": "wikipedia.en:",
+      "url:http\\://": "http://",
+      "url:http\\://en.wikipedia.org/wiki/": "wikipedia.en:",
+      "url:http\\://omim.org/entry/": "omim:",
+      "url:http\\://www.ncbi.nlm.nih.gov/gene/": "ncbigene:",
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+      "url:https\\://en.wikipedia.org/wiki/": "wikipedia.en:",
+      "url:https\\://ghr.nlm.nih.gov/condition/": "ghr:",
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+      "url:https\\://www.omim.org/entry/": "omim:",
+      "urn:issn:": "issn:",
+      "vo/ontorat/PR:": "PR:",
+      "xsd\\:": "xsd:"
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+    "resource_full": {},
+    "resource_prefix": {
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+        "actively:involves": "biolink:actively_involves",
+        "affected:by": "biolink:affected_by",
+        "aggregate:statistic": "biolink:aggregate_statistic",
+        "associated:with": "biolink:associated_with",
+        "association:slot": "biolink:association_slot",
+        "association:type": "biolink:association_type",
+        "available:from": "biolink:available_from",
+        "base:coordinate": "biolink:base_coordinate",
+        "biomarker:for": "biolink:biomarker_for",
+        "capable:of": "biolink:capable_of",
+        "caused:by": "biolink:caused_by",
+        "close:match": "biolink:close_match",
+        "coexists:with": "biolink:coexists_with",
+        "coexpressed:with": "biolink:coexpressed_with",
+        "colocalizes:with": "biolink:colocalizes_with",
+        "completed:by": "biolink:completed_by"
+      },
+      "biomodels.teddy": {
+        "TR:": "biomodels.teddy:"
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+      "caloha": {
+        "UBERON: BIRNLEX:": "birnlex:"
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+      "cellosaurus": {
+        "PubChem_Cell_line:CVCL_": "cellosaurus:",
+        "pgx:CVCL_": "cellosaurus:"
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+        "DrugBank:DBSALT": "drugbank.salt:"
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+      "chmo": {
+        "Orange:": "orangebook:",
+        "Orange: ": "orangebook:"
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+      "ehdaa2": {
+        "CS": "carnegie.stage:"
+      },
+      "doid": {
+        "MIM:PS": "omim.ps:"
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+      "emapa": {
+        "TS:": "theiler:"
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+      "enm": {
+        "Thesaurus:C": "NCIT:C"
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+      "idocovid19": {
+        "UniProtKN:": "uniprot:"
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+      "idomal": {
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+      "ito": {
+        "format:": "edam.format:",
+        "operation:": "edam.operation:",
+        "topic:": "edam.topic:"
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+      "mcro": {
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+        "operation:": "edam.operation:",
+        "topic:": "edam.topic:"
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+      "mdm": {
+        "drugbank:DB:": "drugbank:DB"
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+        "created:by": "dcterms:creator",
+        "created:date": "dcterms:created",
+        "creation:date": "dcterms:created"
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+      "pr": {
+        "OMA:": "uniprot:",
+        "iPTMnet:": "uniprot:"
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+      "senso": {
+        "odo:SENSO_": "senso:"
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+      "sio": {
+        "ns2:": "skos:"
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+      "srao": {
+        "topic:": "edam.topic:"
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+      "t4fs": {
+        "TF4S:": "t4fs:"
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+      "uniprot.disease": {
+        "http://purl.obolibrary.org/obo/TEMP#": "uniprot.disease:"
+      },
+      "uniprot.location": {
+        "http://purl.obolibrary.org/obo/TEMP#": "uniprot.location:"
+      },
+      "worldavatar.kin": {
+        "OntoKin:": "worldavatar.kin:"
+      },
+      "xlmod": {
+        "CID_Fragment:": "obo:xlmod#CID_Fragment",
+        "baseSpecificities:": "obo:xlmod#baseSpecificities",
+        "bridgeFormula:": "obo:xlmod#bridgeFormula",
+        "deadEndFormula:": "obo:xlmod#deadEndFormula",
+        "doubletDeltaMass:": "obo:xlmod#doubletDeltaMass",
+        "hydrophilicPEGchain:": "obo:xlmod#hydrophilicPEGchain",
+        "maxAbsorption:": "obo:xlmod#maxAbsorption",
+        "monoIsotopicMass:": "obo:xlmod#monoIsotopicMass",
+        "reactionSites:": "obo:xlmod#reactionSites",
+        "reporterMass:": "obo:xlmod#reporterMass",
+        "secondaryBaseSpecificities:": "obo:xlmod#secondaryBaseSpecificities",
+        "secondarySpecificities:": "obo:xlmod#secondarySpecificities",
+        "spacerLength:": "obo:xlmod#spacerLength",
+        "specificities:": "obo:xlmod#specificities",
+        "waveLengthRange:": "obo:xlmod#waveLengthRange"
+      }
+    }
+  }
+}