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+pyobo/mocks.py,sha256=8f9e392bd3ff0cfb0306e6070eb8724cb8e694fa0d951744b5c4652e15e56d72,2440
+pyobo-0.12.0.dist-info/licenses/LICENSE,sha256=41c80964a1b1956e41c013670812fc5592d5b51bd7b3cd4287d949450488a498,1076
+pyobo-0.12.0.dist-info/WHEEL,sha256=75a1e6cb20cd73e6878351e9e19d65d3d1832ba44f36116fe21a93d222c5897a,79
+pyobo-0.12.0.dist-info/entry_points.txt,sha256=00d833beec05ffdff58a90a8c49b5b04ce80e22d8c92ddfd80c3f340eea1bc6b,42
+pyobo-0.12.0.dist-info/METADATA,sha256=3279dbc737f1a343a764ca3e2295ff4118fd6568de059f23cffb08a985e388e8,23685
+pyobo-0.12.0.dist-info/RECORD,,

pyobo-0.12.0.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: uv 0.6.16
+Root-Is-Purelib: true
+Tag: py3-none-any

{pyobo-0.11.1.dist-info → pyobo-0.12.0.dist-info}/entry_points.txt

@@ -1,2 +1,3 @@
 [console_scripts]
 pyobo = pyobo.cli:main
+

pyobo/apps/__init__.py

@@ -1,3 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""A collection of web apps built on PyOBO."""

pyobo/apps/cli.py

@@ -1,24 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""CLI for PyOBO apps."""
-
-import click
-
-from .gilda.cli import main as gilda_main
-from .mapper.cli import main as mapper_main
-
-__all__ = [
-    "main",
-]
-
-
-@click.group(name="apps")
-def main():
-    """Apps."""
-
-
-main.add_command(gilda_main)
-main.add_command(mapper_main)
-
-if __name__ == "__main__":
-    main()

pyobo/apps/gilda/__init__.py

@@ -1,3 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""PyOBO's Gilda Service."""

pyobo/apps/gilda/__main__.py

@@ -1,8 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""CLI for PyOBO's Gilda Service."""
-
-from .cli import main
-
-if __name__ == "__main__":
-    main()

pyobo/apps/gilda/app.py

@@ -1,48 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""PyOBO's Gilda Service."""
-
-from typing import Iterable, Union
-
-import flask
-from flask_bootstrap import Bootstrap
-from flask_wtf import FlaskForm
-from wtforms.fields import StringField, SubmitField
-from wtforms.validators import DataRequired
-
-from pyobo.gilda_utils import get_grounder
-
-
-class Form(FlaskForm):
-    """Form for submitting a query."""
-
-    text = StringField("Text", validators=[DataRequired()])
-    submit = SubmitField()
-
-    def make_response(self):
-        """Make a response with the text."""
-        return flask.redirect(flask.url_for("ground", text=self.text.data))
-
-
-def get_app(prefix: Union[str, Iterable[str]]):
-    """Make an app for grounding the text."""
-    grounder = get_grounder(prefix)
-
-    app = flask.Flask(__name__)
-    app.config["WTF_CSRF_ENABLED"] = False
-    Bootstrap(app)
-
-    @app.route("/", methods=["GET", "POST"])
-    def home():
-        """Ground the given text."""
-        form = Form()
-        if form.validate_on_submit():
-            return form.make_response()
-        return flask.render_template("home.html", form=form)
-
-    @app.route("/ground/<text>")
-    def ground(text: str):
-        """Ground the given text."""
-        return flask.jsonify([scored_match.to_json() for scored_match in grounder.ground(text)])
-
-    return app

pyobo/apps/gilda/cli.py

@@ -1,36 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""CLI for PyOBO's Gilda Service."""
-
-import click
-from more_click import (
-    host_option,
-    port_option,
-    run_app,
-    verbose_option,
-    with_gunicorn_option,
-    workers_option,
-)
-
-__all__ = [
-    "main",
-]
-
-
-@click.command(name="gilda")
-@click.argument("prefix", nargs=-1)
-@verbose_option
-@host_option
-@workers_option
-@port_option
-@with_gunicorn_option
-def main(prefix: str, host: str, port: str, with_gunicorn: bool, workers: int):
-    """Run the Gilda service for this database."""
-    from .app import get_app
-
-    app = get_app(prefix)
-    run_app(app, host=host, port=port, with_gunicorn=with_gunicorn, workers=workers)
-
-
-if __name__ == "__main__":
-    main()

pyobo/apps/gilda/templates/base.html

@@ -1,33 +0,0 @@
-<!doctype html>
-<html lang="en">
-<head>
-    {% block head %}
-        <!-- Required meta tags -->
-        <meta charset="utf-8">
-        <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-
-        {% block styles %}
-            <!-- Bootstrap CSS -->
-            {{ bootstrap.load_css() }}
-        {% endblock %}
-
-        <script src="https://kit.fontawesome.com/4c86883252.js" crossorigin="anonymous"></script>
-
-        <title>{% block title %}{% endblock %}</title>
-    {% endblock %}
-</head>
-<body>
-<div class="container" style="margin-top: 50px; margin-bottom: 50px">
-    <div class="row">
-        <div class="card">
-            <!-- Your page content -->
-            {% block content %}{% endblock %}
-        </div>
-    </div>
-</div>
-{% block scripts %}
-    <!-- Optional JavaScript -->
-    {{ bootstrap.load_js() }}
-{% endblock %}
-</body>
-</html>

pyobo/apps/gilda/templates/home.html

@@ -1,11 +0,0 @@
-{% extends "base.html" %}
-
-{% block content %}
-    <h5 class="card-header">Gilda</h5>
-    <div class="card-body">
-        <p>
-            This is the Gilda grounding service.
-        </p>
-        {{ wtf.quick_form(form, form_type='horizontal') }}
-    </div>
-{% endblock %}

pyobo/apps/gilda/templates/matches.html

@@ -1,32 +0,0 @@
-{% extends "base.html" %}
-
-{% block content %}
-    <h5 class="card-header">Gilda</h5>
-    <div class="card-body">
-        <p>
-            Results for <code>{{ form.text.data }}</code>
-            {% if form.context.data %} with context
-                <i>{{ form.context.data }}</i>{% endif %}
-        </p>
-    </div>
-    <table class="table table-striped table-hover">
-        <thead>
-        <tr>
-            <th>Database</th>
-            <th>Identifier</th>
-            <th>Name</th>
-            <th>Score</th>
-        </tr>
-        </thead>
-        <tbody>
-        {% for match in matches %}
-            <tr>
-                <td>{{ match['term']['db'] }}</td>
-                <td>{{ match['term']['id'] }}</td>
-                <td>{{ match['term']['entry_name'] }}</td>
-                <td class="text-right">{{ match['score'] | round(4) }}</td>
-            </tr>
-        {% endfor %}
-        </tbody>
-    </table>
-{% endblock %}

pyobo/apps/mapper/__init__.py

@@ -1,3 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""PyOBO's Mapping Service."""

pyobo/apps/mapper/__main__.py

@@ -1,11 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""CLI for PyOBO's Mapping Service.
-
-Run with ``python -m pyobo.apps.mapper``
-"""
-
-from .cli import main
-
-if __name__ == "__main__":
-    main()

pyobo/apps/mapper/cli.py

@@ -1,37 +0,0 @@
-# -*- coding: utf-8 -*-
-
-"""CLI for PyOBO's Mapping Service.
-
-Run with ``python -m pyobo.apps.mapper``.
-"""
-
-import click
-from more_click import (
-    host_option,
-    port_option,
-    run_app,
-    verbose_option,
-    with_gunicorn_option,
-)
-
-__all__ = [
-    "main",
-]
-
-
-@click.command(name="mapper")
-@click.option("-x", "--mappings-file")
-@port_option
-@host_option
-@with_gunicorn_option
-@verbose_option
-def main(mappings_file, host: str, port: str, with_gunicorn: bool):
-    """Run the mappings app."""
-    from .mapper import get_app
-
-    app = get_app(mappings_file)
-    run_app(app=app, host=host, port=port, with_gunicorn=with_gunicorn)
-
-
-if __name__ == "__main__":
-    main()