pyobo 0.11.0__py3-none-any.whl → 0.11.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. pyobo/constants.py +1 -0
  2. pyobo/gilda_utils.py +14 -11
  3. pyobo/obographs.py +5 -2
  4. pyobo/resources/so.py +55 -0
  5. pyobo/resources/so.tsv +2604 -0
  6. pyobo/sources/complexportal.py +54 -15
  7. pyobo/sources/dictybase_gene.py +14 -9
  8. pyobo/sources/drugcentral.py +4 -1
  9. pyobo/sources/expasy.py +22 -4
  10. pyobo/sources/flybase.py +3 -2
  11. pyobo/sources/hgnc.py +24 -19
  12. pyobo/sources/hgncgenefamily.py +7 -7
  13. pyobo/sources/kegg/genome.py +18 -6
  14. pyobo/sources/mirbase.py +9 -3
  15. pyobo/sources/npass.py +1 -1
  16. pyobo/sources/pathbank.py +32 -23
  17. pyobo/sources/pombase.py +6 -3
  18. pyobo/sources/reactome.py +28 -7
  19. pyobo/sources/rgd.py +1 -1
  20. pyobo/sources/slm.py +28 -14
  21. pyobo/sources/uniprot/uniprot.py +7 -6
  22. pyobo/sources/zfin.py +18 -6
  23. pyobo/struct/reference.py +9 -8
  24. pyobo/struct/struct.py +30 -20
  25. pyobo/struct/typedef.py +5 -0
  26. pyobo/version.py +1 -1
  27. {pyobo-0.11.0.dist-info → pyobo-0.11.2.dist-info}/METADATA +50 -62
  28. {pyobo-0.11.0.dist-info → pyobo-0.11.2.dist-info}/RECORD +31 -45
  29. {pyobo-0.11.0.dist-info → pyobo-0.11.2.dist-info}/WHEEL +1 -1
  30. pyobo/apps/__init__.py +0 -3
  31. pyobo/apps/cli.py +0 -24
  32. pyobo/apps/gilda/__init__.py +0 -3
  33. pyobo/apps/gilda/__main__.py +0 -8
  34. pyobo/apps/gilda/app.py +0 -48
  35. pyobo/apps/gilda/cli.py +0 -36
  36. pyobo/apps/gilda/templates/base.html +0 -33
  37. pyobo/apps/gilda/templates/home.html +0 -11
  38. pyobo/apps/gilda/templates/matches.html +0 -32
  39. pyobo/apps/mapper/__init__.py +0 -3
  40. pyobo/apps/mapper/__main__.py +0 -11
  41. pyobo/apps/mapper/cli.py +0 -37
  42. pyobo/apps/mapper/mapper.py +0 -187
  43. pyobo/apps/mapper/templates/base.html +0 -35
  44. pyobo/apps/mapper/templates/mapper_home.html +0 -64
  45. pyobo-0.11.0.dist-info/LICENSE +0 -21
  46. {pyobo-0.11.0.dist-info → pyobo-0.11.2.dist-info}/entry_points.txt +0 -0
  47. {pyobo-0.11.0.dist-info → pyobo-0.11.2.dist-info}/top_level.txt +0 -0
pyobo/resources/so.tsv ADDED
@@ -0,0 +1,2604 @@
1
+ 0000000 Sequence_Ontology
2
+ 0000001 region
3
+ 0000002 sequence_secondary_structure
4
+ 0000003 G_quartet
5
+ 0000004 interior_coding_exon
6
+ 0000005 satellite_DNA
7
+ 0000006 PCR_product
8
+ 0000007 read_pair
9
+ 0000008 gene_sensu_your_favorite_organism
10
+ 0000009 gene_class
11
+ 0000010 protein_coding
12
+ 0000011 non_protein_coding
13
+ 0000012 scRNA_primary_transcript
14
+ 0000013 scRNA
15
+ 0000014 INR_motif
16
+ 0000015 DPE_motif
17
+ 0000016 BREu_motif
18
+ 0000017 PSE_motif
19
+ 0000018 linkage_group
20
+ 0000020 RNA_internal_loop
21
+ 0000021 asymmetric_RNA_internal_loop
22
+ 0000022 A_minor_RNA_motif
23
+ 0000023 K_turn_RNA_motif
24
+ 0000024 sarcin_like_RNA_motif
25
+ 0000025 symmetric_RNA_internal_loop
26
+ 0000026 RNA_junction_loop
27
+ 0000027 RNA_hook_turn
28
+ 0000028 base_pair
29
+ 0000029 WC_base_pair
30
+ 0000030 sugar_edge_base_pair
31
+ 0000031 aptamer
32
+ 0000032 DNA_aptamer
33
+ 0000033 RNA_aptamer
34
+ 0000034 morpholino_oligo
35
+ 0000035 riboswitch
36
+ 0000036 matrix_attachment_site
37
+ 0000037 locus_control_region
38
+ 0000038 match_set
39
+ 0000039 match_part
40
+ 0000040 genomic_clone
41
+ 0000041 sequence_operation
42
+ 0000042 pseudogene_attribute
43
+ 0000043 processed_pseudogene
44
+ 0000044 pseudogene_by_unequal_crossing_over
45
+ 0000045 delete
46
+ 0000046 insert
47
+ 0000047 invert
48
+ 0000048 substitute
49
+ 0000049 translocate
50
+ 0000050 gene_part
51
+ 0000051 probe
52
+ 0000052 assortment_derived_deficiency
53
+ 0000053 sequence_variant_affecting_regulatory_region
54
+ 0000054 aneuploid
55
+ 0000055 hyperploid
56
+ 0000056 hypoploid
57
+ 0000057 operator
58
+ 0000058 assortment_derived_aneuploid
59
+ 0000059 nuclease_binding_site
60
+ 0000060 compound_chromosome_arm
61
+ 0000061 restriction_enzyme_binding_site
62
+ 0000062 deficient_intrachromosomal_transposition
63
+ 0000063 deficient_interchromosomal_transposition
64
+ 0000064 gene_by_transcript_attribute
65
+ 0000065 free_chromosome_arm
66
+ 0000066 gene_by_polyadenylation_attribute
67
+ 0000067 gene_to_gene_feature
68
+ 0000068 overlapping
69
+ 0000069 inside_intron
70
+ 0000070 inside_intron_antiparallel
71
+ 0000071 inside_intron_parallel
72
+ 0000072 end_overlapping_gene
73
+ 0000073 five_prime_three_prime_overlap
74
+ 0000074 five_prime_five_prime_overlap
75
+ 0000075 three_prime_three_prime_overlap
76
+ 0000076 three_prime_five_prime_overlap
77
+ 0000077 antisense
78
+ 0000078 polycistronic_transcript
79
+ 0000079 dicistronic_transcript
80
+ 0000080 operon_member
81
+ 0000081 gene_array_member
82
+ 0000082 processed_transcript_attribute
83
+ 0000083 macronuclear_sequence
84
+ 0000084 micronuclear_sequence
85
+ 0000085 gene_by_genome_location
86
+ 0000086 gene_by_organelle_of_genome
87
+ 0000087 nuclear_gene
88
+ 0000088 mt_gene
89
+ 0000089 kinetoplast_gene
90
+ 0000090 plastid_gene
91
+ 0000091 apicoplast_gene
92
+ 0000092 ct_gene
93
+ 0000093 chromoplast_gene
94
+ 0000094 cyanelle_gene
95
+ 0000095 leucoplast_gene
96
+ 0000096 proplastid_gene
97
+ 0000097 nucleomorph_gene
98
+ 0000098 plasmid_gene
99
+ 0000099 proviral_gene
100
+ 0000100 endogenous_retroviral_gene
101
+ 0000101 transposable_element
102
+ 0000102 expressed_sequence_match
103
+ 0000103 clone_insert_end
104
+ 0000104 polypeptide
105
+ 0000105 chromosome_arm
106
+ 0000106 non_capped_primary_transcript
107
+ 0000107 sequencing_primer
108
+ 0000108 mRNA_with_frameshift
109
+ 0000109 sequence_variant_obs
110
+ 0000110 sequence_feature
111
+ 0000111 transposable_element_gene
112
+ 0000112 primer
113
+ 0000113 proviral_region
114
+ 0000114 methylated_cytosine
115
+ 0000115 transcript_feature
116
+ 0000116 edited
117
+ 0000117 transcript_with_readthrough_stop_codon
118
+ 0000118 transcript_with_translational_frameshift
119
+ 0000119 regulated
120
+ 0000120 protein_coding_primary_transcript
121
+ 0000121 forward_primer
122
+ 0000122 RNA_sequence_secondary_structure
123
+ 0000123 transcriptionally_regulated
124
+ 0000124 transcriptionally_constitutive
125
+ 0000125 transcriptionally_induced
126
+ 0000126 transcriptionally_repressed
127
+ 0000127 silenced_gene
128
+ 0000128 gene_silenced_by_DNA_modification
129
+ 0000129 gene_silenced_by_DNA_methylation
130
+ 0000130 post_translationally_regulated
131
+ 0000131 translationally_regulated
132
+ 0000132 reverse_primer
133
+ 0000133 epigenetically_modified
134
+ 0000134 genomically_imprinted
135
+ 0000135 maternally_imprinted
136
+ 0000136 paternally_imprinted
137
+ 0000137 allelically_excluded
138
+ 0000138 gene_rearranged_at_DNA_level
139
+ 0000139 ribosome_entry_site
140
+ 0000140 attenuator
141
+ 0000141 terminator
142
+ 0000142 DNA_sequence_secondary_structure
143
+ 0000143 assembly_component
144
+ 0000144 primary_transcript_attribute
145
+ 0000145 recoded_codon
146
+ 0000146 capped
147
+ 0000147 exon
148
+ 0000148 supercontig
149
+ 0000149 contig
150
+ 0000150 read
151
+ 0000151 clone
152
+ 0000152 YAC
153
+ 0000153 BAC
154
+ 0000154 PAC
155
+ 0000155 plasmid
156
+ 0000156 cosmid
157
+ 0000157 phagemid
158
+ 0000158 fosmid
159
+ 0000159 deletion
160
+ 0000160 lambda_clone
161
+ 0000161 methylated_adenine
162
+ 0000162 splice_site
163
+ 0000163 five_prime_cis_splice_site
164
+ 0000164 three_prime_cis_splice_site
165
+ 0000165 enhancer
166
+ 0000166 enhancer_bound_by_factor
167
+ 0000167 promoter
168
+ 0000168 restriction_enzyme_cut_site
169
+ 0000169 RNApol_I_promoter
170
+ 0000170 RNApol_II_promoter
171
+ 0000171 RNApol_III_promoter
172
+ 0000172 CAAT_signal
173
+ 0000173 GC_rich_promoter_region
174
+ 0000174 TATA_box
175
+ 0000175 minus_10_signal
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+ 0000176 minus_35_signal
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+ 0000177 cross_genome_match
178
+ 0000178 operon
179
+ 0000179 clone_insert_start
180
+ 0000180 retrotransposon
181
+ 0000181 translated_nucleotide_match
182
+ 0000182 DNA_transposon
183
+ 0000183 non_transcribed_region
184
+ 0000184 U2_intron
185
+ 0000185 primary_transcript
186
+ 0000186 LTR_retrotransposon
187
+ 0000187 repeat_family
188
+ 0000188 intron
189
+ 0000189 non_LTR_retrotransposon
190
+ 0000190 five_prime_intron
191
+ 0000191 interior_intron
192
+ 0000192 three_prime_intron
193
+ 0000193 RFLP_fragment
194
+ 0000194 LINE_element
195
+ 0000195 coding_exon
196
+ 0000196 five_prime_coding_exon_coding_region
197
+ 0000197 three_prime_coding_exon_coding_region
198
+ 0000198 noncoding_exon
199
+ 0000199 translocation
200
+ 0000200 five_prime_coding_exon
201
+ 0000201 interior_exon
202
+ 0000202 three_prime_coding_exon
203
+ 0000203 UTR
204
+ 0000204 five_prime_UTR
205
+ 0000205 three_prime_UTR
206
+ 0000206 SINE_element
207
+ 0000207 simple_sequence_length_variation
208
+ 0000208 terminal_inverted_repeat_element
209
+ 0000209 rRNA_primary_transcript
210
+ 0000210 tRNA_primary_transcript
211
+ 0000211 alanine_tRNA_primary_transcript
212
+ 0000212 arginine_tRNA_primary_transcript
213
+ 0000213 asparagine_tRNA_primary_transcript
214
+ 0000214 aspartic_acid_tRNA_primary_transcript
215
+ 0000215 cysteine_tRNA_primary_transcript
216
+ 0000216 glutamic_acid_tRNA_primary_transcript
217
+ 0000217 glutamine_tRNA_primary_transcript
218
+ 0000218 glycine_tRNA_primary_transcript
219
+ 0000219 histidine_tRNA_primary_transcript
220
+ 0000220 isoleucine_tRNA_primary_transcript
221
+ 0000221 leucine_tRNA_primary_transcript
222
+ 0000222 lysine_tRNA_primary_transcript
223
+ 0000223 methionine_tRNA_primary_transcript
224
+ 0000224 phenylalanine_tRNA_primary_transcript
225
+ 0000225 proline_tRNA_primary_transcript
226
+ 0000226 serine_tRNA_primary_transcript
227
+ 0000227 threonine_tRNA_primary_transcript
228
+ 0000228 tryptophan_tRNA_primary_transcript
229
+ 0000229 tyrosine_tRNA_primary_transcript
230
+ 0000230 valine_tRNA_primary_transcript
231
+ 0000231 snRNA_primary_transcript
232
+ 0000232 snoRNA_primary_transcript
233
+ 0000233 mature_transcript
234
+ 0000234 mRNA
235
+ 0000235 TF_binding_site
236
+ 0000236 ORF
237
+ 0000237 transcript_attribute
238
+ 0000238 foldback_element
239
+ 0000239 flanking_region
240
+ 0000240 chromosome_variation
241
+ 0000241 internal_UTR
242
+ 0000242 untranslated_region_polycistronic_mRNA
243
+ 0000243 internal_ribosome_entry_site
244
+ 0000244 four_cutter_restriction_site
245
+ 0000245 mRNA_by_polyadenylation_status
246
+ 0000246 polyadenylated
247
+ 0000247 mRNA_not_polyadenylated
248
+ 0000248 sequence_length_alteration
249
+ 0000249 six_cutter_restriction_site
250
+ 0000250 modified_RNA_base_feature
251
+ 0000251 eight_cutter_restriction_site
252
+ 0000252 rRNA
253
+ 0000253 tRNA
254
+ 0000254 alanyl_tRNA
255
+ 0000255 rRNA_small_subunit_primary_transcript
256
+ 0000256 asparaginyl_tRNA
257
+ 0000257 aspartyl_tRNA
258
+ 0000258 cysteinyl_tRNA
259
+ 0000259 glutaminyl_tRNA
260
+ 0000260 glutamyl_tRNA
261
+ 0000261 glycyl_tRNA
262
+ 0000262 histidyl_tRNA
263
+ 0000263 isoleucyl_tRNA
264
+ 0000264 leucyl_tRNA
265
+ 0000265 lysyl_tRNA
266
+ 0000266 methionyl_tRNA
267
+ 0000267 phenylalanyl_tRNA
268
+ 0000268 prolyl_tRNA
269
+ 0000269 seryl_tRNA
270
+ 0000270 threonyl_tRNA
271
+ 0000271 tryptophanyl_tRNA
272
+ 0000272 tyrosyl_tRNA
273
+ 0000273 valyl_tRNA
274
+ 0000274 snRNA
275
+ 0000275 snoRNA
276
+ 0000276 miRNA
277
+ 0000277 bound_by_factor
278
+ 0000278 transcript_bound_by_nucleic_acid
279
+ 0000279 transcript_bound_by_protein
280
+ 0000280 engineered_gene
281
+ 0000281 engineered_foreign_gene
282
+ 0000282 mRNA_with_minus_1_frameshift
283
+ 0000283 engineered_foreign_transposable_element_gene
284
+ 0000284 type_I_enzyme_restriction_site
285
+ 0000285 foreign_gene
286
+ 0000286 long_terminal_repeat
287
+ 0000287 fusion_gene
288
+ 0000288 engineered_fusion_gene
289
+ 0000289 microsatellite
290
+ 0000290 dinucleotide_repeat_microsatellite_feature
291
+ 0000291 trinucleotide_repeat_microsatellite_feature
292
+ 0000292 repetitive_element
293
+ 0000293 engineered_foreign_repetitive_element
294
+ 0000294 inverted_repeat
295
+ 0000295 U12_intron
296
+ 0000296 origin_of_replication
297
+ 0000297 D_loop
298
+ 0000298 recombination_feature
299
+ 0000299 specific_recombination_site
300
+ 0000300 recombination_feature_of_rearranged_gene
301
+ 0000301 vertebrate_immune_system_gene_recombination_feature
302
+ 0000302 J_gene_recombination_feature
303
+ 0000303 clip
304
+ 0000304 type_II_enzyme_restriction_site
305
+ 0000305 modified_DNA_base
306
+ 0000306 methylated_DNA_base_feature
307
+ 0000307 CpG_island
308
+ 0000308 sequence_feature_locating_method
309
+ 0000309 computed_feature
310
+ 0000310 predicted_ab_initio_computation
311
+ 0000311 computed_feature_by_similarity
312
+ 0000312 experimentally_determined
313
+ 0000313 stem_loop
314
+ 0000314 direct_repeat
315
+ 0000315 TSS
316
+ 0000316 CDS
317
+ 0000317 cDNA_clone
318
+ 0000318 start_codon
319
+ 0000319 stop_codon
320
+ 0000320 intronic_splice_enhancer
321
+ 0000321 mRNA_with_plus_1_frameshift
322
+ 0000322 nuclease_hypersensitive_site
323
+ 0000323 coding_start
324
+ 0000324 tag
325
+ 0000325 rRNA_large_subunit_primary_transcript
326
+ 0000326 SAGE_tag
327
+ 0000327 coding_end
328
+ 0000328 microarray_oligo
329
+ 0000329 mRNA_with_plus_2_frameshift
330
+ 0000330 conserved_region
331
+ 0000331 STS
332
+ 0000332 coding_conserved_region
333
+ 0000333 exon_junction
334
+ 0000334 nc_conserved_region
335
+ 0000335 mRNA_with_minus_2_frameshift
336
+ 0000336 pseudogene
337
+ 0000337 RNAi_reagent
338
+ 0000338 MITE
339
+ 0000339 recombination_hotspot
340
+ 0000340 chromosome
341
+ 0000341 chromosome_band
342
+ 0000342 site_specific_recombination_target_region
343
+ 0000343 match
344
+ 0000344 splice_enhancer
345
+ 0000345 EST
346
+ 0000346 loxP_site
347
+ 0000347 nucleotide_match
348
+ 0000348 nucleic_acid
349
+ 0000349 protein_match
350
+ 0000350 FRT_site
351
+ 0000351 synthetic_sequence
352
+ 0000352 DNA
353
+ 0000353 sequence_assembly
354
+ 0000354 group_1_intron_homing_endonuclease_target_region
355
+ 0000355 haplotype_block
356
+ 0000356 RNA
357
+ 0000357 flanked
358
+ 0000359 floxed
359
+ 0000360 codon
360
+ 0000361 FRT_flanked
361
+ 0000362 invalidated_by_chimeric_cDNA
362
+ 0000363 floxed_gene
363
+ 0000364 transposable_element_flanking_region
364
+ 0000365 integron
365
+ 0000366 insertion_site
366
+ 0000367 attI_site
367
+ 0000368 transposable_element_insertion_site
368
+ 0000369 integrase_coding_region
369
+ 0000370 small_regulatory_ncRNA
370
+ 0000371 conjugative_transposon
371
+ 0000372 enzymatic_RNA
372
+ 0000373 recombinationally_inverted_gene
373
+ 0000374 ribozyme
374
+ 0000375 cytosolic_5_8S_rRNA
375
+ 0000376 RNA_6S
376
+ 0000377 CsrB_RsmB_RNA
377
+ 0000378 DsrA_RNA
378
+ 0000379 GcvB_RNA
379
+ 0000380 hammerhead_ribozyme
380
+ 0000381 group_IIA_intron
381
+ 0000382 group_IIB_intron
382
+ 0000383 MicF_RNA
383
+ 0000384 OxyS_RNA
384
+ 0000385 RNase_MRP_RNA
385
+ 0000386 RNase_P_RNA
386
+ 0000387 RprA_RNA
387
+ 0000388 RRE_RNA
388
+ 0000389 spot_42_RNA
389
+ 0000390 telomerase_RNA
390
+ 0000391 U1_snRNA
391
+ 0000392 U2_snRNA
392
+ 0000393 U4_snRNA
393
+ 0000394 U4atac_snRNA
394
+ 0000395 U5_snRNA
395
+ 0000396 U6_snRNA
396
+ 0000397 U6atac_snRNA
397
+ 0000398 U11_snRNA
398
+ 0000399 U12_snRNA
399
+ 0000400 sequence_attribute
400
+ 0000401 gene_attribute
401
+ 0000402 enhancer_attribute
402
+ 0000403 U14_snoRNA
403
+ 0000404 vault_RNA
404
+ 0000405 Y_RNA
405
+ 0000406 twintron
406
+ 0000407 cytosolic_18S_rRNA
407
+ 0000408 site
408
+ 0000409 binding_site
409
+ 0000410 protein_binding_site
410
+ 0000411 rescue_region
411
+ 0000412 restriction_fragment
412
+ 0000413 sequence_difference
413
+ 0000414 invalidated_by_genomic_contamination
414
+ 0000415 invalidated_by_genomic_polyA_primed_cDNA
415
+ 0000416 invalidated_by_partial_processing
416
+ 0000417 polypeptide_domain
417
+ 0000418 signal_peptide
418
+ 0000419 mature_protein_region
419
+ 0000420 five_prime_terminal_inverted_repeat
420
+ 0000421 three_prime_terminal_inverted_repeat
421
+ 0000422 U5_LTR_region
422
+ 0000423 R_LTR_region
423
+ 0000424 U3_LTR_region
424
+ 0000425 five_prime_LTR
425
+ 0000426 three_prime_LTR
426
+ 0000427 R_five_prime_LTR_region
427
+ 0000428 U5_five_prime_LTR_region
428
+ 0000429 U3_five_prime_LTR_region
429
+ 0000430 R_three_prime_LTR_region
430
+ 0000431 U3_three_prime_LTR_region
431
+ 0000432 U5_three_prime_LTR_region
432
+ 0000433 non_LTR_retrotransposon_polymeric_tract
433
+ 0000434 target_site_duplication
434
+ 0000435 RR_tract
435
+ 0000436 ARS
436
+ 0000437 assortment_derived_duplication
437
+ 0000438 gene_not_polyadenylated
438
+ 0000439 inverted_ring_chromosome
439
+ 0000440 vector_replicon
440
+ 0000441 ss_oligo
441
+ 0000442 ds_oligo
442
+ 0000443 polymer_attribute
443
+ 0000444 three_prime_noncoding_exon
444
+ 0000445 five_prime_noncoding_exon
445
+ 0000446 UTR_intron
446
+ 0000447 five_prime_UTR_intron
447
+ 0000448 three_prime_UTR_intron
448
+ 0000449 random_sequence
449
+ 0000450 interband
450
+ 0000451 gene_with_polyadenylated_mRNA
451
+ 0000452 transgene_attribute
452
+ 0000453 chromosomal_transposition
453
+ 0000454 rasiRNA
454
+ 0000455 gene_with_mRNA_with_frameshift
455
+ 0000456 recombinationally_rearranged_gene
456
+ 0000457 interchromosomal_duplication
457
+ 0000458 D_gene_segment
458
+ 0000459 gene_with_trans_spliced_transcript
459
+ 0000460 vertebrate_immunoglobulin_T_cell_receptor_segment
460
+ 0000461 inversion_derived_bipartite_deficiency
461
+ 0000462 pseudogenic_region
462
+ 0000463 encodes_alternately_spliced_transcripts
463
+ 0000464 decayed_exon
464
+ 0000465 inversion_derived_deficiency_plus_duplication
465
+ 0000466 V_gene_segment
466
+ 0000467 post_translationally_regulated_by_protein_stability
467
+ 0000468 golden_path_fragment
468
+ 0000469 post_translationally_regulated_by_protein_modification
469
+ 0000470 J_gene_segment
470
+ 0000471 autoregulated
471
+ 0000472 tiling_path
472
+ 0000473 negatively_autoregulated
473
+ 0000474 tiling_path_fragment
474
+ 0000475 positively_autoregulated
475
+ 0000476 contig_read
476
+ 0000477 polycistronic_gene
477
+ 0000478 C_gene_segment
478
+ 0000479 trans_spliced_transcript
479
+ 0000480 tiling_path_clone
480
+ 0000481 terminal_inverted_repeat
481
+ 0000482 vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
482
+ 0000483 nc_primary_transcript
483
+ 0000484 three_prime_coding_exon_noncoding_region
484
+ 0000485 DJ_J_cluster
485
+ 0000486 five_prime_coding_exon_noncoding_region
486
+ 0000487 VDJ_J_C_cluster
487
+ 0000488 VDJ_J_cluster
488
+ 0000489 VJ_C_cluster
489
+ 0000490 VJ_J_C_cluster
490
+ 0000491 VJ_J_cluster
491
+ 0000492 D_gene_recombination_feature
492
+ 0000493 three_prime_D_heptamer
493
+ 0000494 three_prime_D_nonamer
494
+ 0000495 three_prime_D_spacer
495
+ 0000496 five_prime_D_heptamer
496
+ 0000497 five_prime_D_nonamer
497
+ 0000498 five_prime_D_spacer
498
+ 0000499 virtual_sequence
499
+ 0000500 Hoogsteen_base_pair
500
+ 0000501 reverse_Hoogsteen_base_pair
501
+ 0000502 transcribed_region
502
+ 0000503 alternately_spliced_gene_encodeing_one_transcript
503
+ 0000504 D_DJ_C_cluster
504
+ 0000505 D_DJ_cluster
505
+ 0000506 D_DJ_J_C_cluster
506
+ 0000507 pseudogenic_exon
507
+ 0000508 D_DJ_J_cluster
508
+ 0000509 D_J_C_cluster
509
+ 0000510 VD_gene_segment
510
+ 0000511 J_C_cluster
511
+ 0000512 inversion_derived_deficiency_plus_aneuploid
512
+ 0000513 J_cluster
513
+ 0000514 J_nonamer
514
+ 0000515 J_heptamer
515
+ 0000516 pseudogenic_transcript
516
+ 0000517 J_spacer
517
+ 0000518 V_DJ_cluster
518
+ 0000519 V_DJ_J_cluster
519
+ 0000520 V_VDJ_C_cluster
520
+ 0000521 V_VDJ_cluster
521
+ 0000522 V_VDJ_J_cluster
522
+ 0000523 V_VJ_C_cluster
523
+ 0000524 V_VJ_cluster
524
+ 0000525 V_VJ_J_cluster
525
+ 0000526 V_cluster
526
+ 0000527 V_D_DJ_C_cluster
527
+ 0000528 V_D_DJ_cluster
528
+ 0000529 V_D_DJ_J_C_cluster
529
+ 0000530 V_D_DJ_J_cluster
530
+ 0000531 V_D_J_C_cluster
531
+ 0000532 V_D_J_cluster
532
+ 0000533 V_heptamer
533
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534
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535
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536
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537
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538
+ 0000539 DJ_C_cluster
539
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540
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541
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542
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543
+ 0000544 helitron
544
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545
+ 0000546 designed_sequence
546
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547
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548
+ 0000549 inversion_derived_duplication_plus_aneuploid
549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
+ 0000561 heptamer_of_recombination_feature_of_vertebrate_immune_system_gene
561
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562
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563
+ 0000564 V_DJ_J_C_cluster
564
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565
+ 0000566 V_VJ_J_C_cluster
566
+ 0000567 inversion_derived_aneuploid_chromosome
567
+ 0000568 bidirectional_promoter
568
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569
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570
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571
+ 0000572 DJ_gene_segment
572
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573
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574
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575
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576
+ 0000577 centromere
577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
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588
+ 0000589 SRP_RNA_primary_transcript
589
+ 0000590 SRP_RNA
590
+ 0000591 pseudoknot
591
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592
+ 0000593 C_D_box_snoRNA
593
+ 0000594 H_ACA_box_snoRNA
594
+ 0000595 C_D_box_snoRNA_primary_transcript
595
+ 0000596 H_ACA_box_snoRNA_primary_transcript
596
+ 0000597 transcript_edited_by_U_insertion/deletion
597
+ 0000598 edited_by_C_insertion_and_dinucleotide_insertion
598
+ 0000599 edited_by_C_to_U_substitution
599
+ 0000600 edited_by_A_to_I_substitution
600
+ 0000601 edited_by_G_addition
601
+ 0000602 guide_RNA
602
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603
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604
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605
+ 0000606 editing_domain
606
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607
+ 0000608 H_ACA_box_snoRNA_encoding
608
+ 0000609 oligo_U_tail
609
+ 0000610 polyA_sequence
610
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611
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612
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613
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614
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615
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616
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617
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618
+ 0000619 A_box
619
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620
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621
+ 0000622 C_box
622
+ 0000623 snRNA_encoding
623
+ 0000624 telomere
624
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625
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626
+ 0000627 insulator
627
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628
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629
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630
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631
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632
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633
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634
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635
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636
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637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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651
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652
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653
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654
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655
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656
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657
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658
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659
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660
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661
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662
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663
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664
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665
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666
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667
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668
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669
+ 0000672 macronucleus_destined_segment
670
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671
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672
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673
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674
+ 0000677 canonical_five_prime_splice_site
675
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676
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677
+ 0000680 non_canonical_start_codon
678
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679
+ 0000682 splicing_feature
680
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681
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682
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683
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684
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685
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686
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687
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688
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689
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690
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691
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692
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693
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694
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695
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696
+ 0000699 junction
697
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698
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699
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700
+ 0000703 experimental_result_region
701
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702
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703
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704
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705
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706
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707
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708
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709
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710
+ 0000713 DNA_motif
711
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712
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713
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714
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715
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716
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717
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718
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719
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720
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721
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722
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723
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724
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725
+ 0000728 intein
726
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727
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728
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729
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730
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731
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732
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733
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734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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744
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745
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746
+ 0000749 plasmid_location
747
+ 0000750 amplification_origin
748
+ 0000751 proviral_location
749
+ 0000752 gene_group_regulatory_region
750
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751
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752
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753
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754
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755
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756
+ 0000759 plasmid_clone
757
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758
+ 0000761 phagemid_clone
759
+ 0000762 PAC_clone
760
+ 0000763 fosmid_clone
761
+ 0000764 BAC_clone
762
+ 0000765 cosmid_clone
763
+ 0000766 pyrrolysyl_tRNA
764
+ 0000767 clone_insert_start
765
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766
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767
+ 0000770 tmRNA_acceptor_piece
768
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769
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770
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771
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772
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773
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774
+ 0000777 pseudogenic_rRNA
775
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776
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777
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778
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779
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780
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781
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782
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783
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784
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785
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786
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787
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788
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789
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790
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791
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792
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793
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794
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795
+ 0000798 engineered_transposable_element
796
+ 0000799 engineered_foreign_transposable_element
797
+ 0000800 assortment_derived_duplication
798
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799
+ 0000802 assortment_derived_deficiency
800
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801
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802
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803
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804
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805
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806
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807
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808
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809
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810
+ 0000813 partially_processed_cDNA_clone
811
+ 0000814 rescue
812
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813
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814
+ 0000817 wild_type
815
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816
+ 0000819 mitochondrial_chromosome
817
+ 0000820 chloroplast_chromosome
818
+ 0000821 chromoplast_chromosome
819
+ 0000822 cyanelle_chromosome
820
+ 0000823 leucoplast_chromosome
821
+ 0000824 macronuclear_chromosome
822
+ 0000825 micronuclear_chromosome
823
+ 0000828 nuclear_chromosome
824
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825
+ 0000830 chromosome_part
826
+ 0000831 gene_member_region
827
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828
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829
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830
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831
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832
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833
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834
+ 0000839 polypeptide_region
835
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836
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837
+ 0000842 gene_component_region
838
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839
+ 0000844 RNApol_II_promoter_region
840
+ 0000845 RNApol_III_promoter_type_1_region
841
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842
+ 0000847 tmRNA_region
843
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844
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845
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846
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847
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848
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849
+ 0000854 paralogous_region
850
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851
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852
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853
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854
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855
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856
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857
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858
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859
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860
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861
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862
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863
+ 0000868 plus_1_frameshift
864
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865
+ 0000870 trans_spliced
866
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867
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868
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869
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870
+ 0000875 bound_by_protein
871
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872
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873
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874
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875
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876
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877
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878
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879
+ 0000884 stop_codon_redefined_as_pyrrolysine
880
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881
+ 0000886 recoded_by_translational_bypass
882
+ 0000887 translationally_frameshifted
883
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884
+ 0000889 paternally_imprinted_gene
885
+ 0000890 post_translationally_regulated_gene
886
+ 0000891 negatively_autoregulated_gene
887
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888
+ 0000893 silenced
889
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890
+ 0000895 silenced_by_DNA_methylation
891
+ 0000896 translationally_regulated_gene
892
+ 0000897 allelically_excluded_gene
893
+ 0000898 epigenetically_modified_gene
894
+ 0000899 nuclear_mitochondrial
895
+ 0000900 processed
896
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897
+ 0000902 transgene
898
+ 0000903 endogenous_retroviral_sequence
899
+ 0000904 rearranged_at_DNA_level
900
+ 0000905 status
901
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902
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903
+ 0000908 supported_by_domain_match
904
+ 0000909 supported_by_EST_or_cDNA
905
+ 0000910 orphan
906
+ 0000911 predicted_by_ab_initio_computation
907
+ 0000912 asx_turn
908
+ 0000913 cloned_cDNA_insert
909
+ 0000914 cloned_genomic_insert
910
+ 0000915 engineered_insert
911
+ 0000916 edit_operation
912
+ 0000917 insert_U
913
+ 0000918 delete_U
914
+ 0000919 substitute_A_to_I
915
+ 0000920 insert_C
916
+ 0000921 insert_dinucleotide
917
+ 0000922 substitute_C_to_U
918
+ 0000923 insert_G
919
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920
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921
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922
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923
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924
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925
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926
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927
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928
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929
+ 0000934 miRNA_target_site
930
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931
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932
+ 0000937 vertebrate_immune_system_feature
933
+ 0000938 vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster
934
+ 0000939 vertebrate_immune_system_gene_recombination_signal_feature
935
+ 0000940 recombinationally_rearranged
936
+ 0000941 recombinationally_rearranged_vertebrate_immune_system_gene
937
+ 0000942 attP_site
938
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939
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940
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941
+ 0000946 integration_excision_site
942
+ 0000947 resolution_site
943
+ 0000948 inversion_site
944
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945
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946
+ 0000951 eukaryotic_terminator
947
+ 0000952 oriV
948
+ 0000953 oriC
949
+ 0000954 DNA_chromosome
950
+ 0000955 double_stranded_DNA_chromosome
951
+ 0000956 single_stranded_DNA_chromosome
952
+ 0000957 linear_double_stranded_DNA_chromosome
953
+ 0000958 circular_double_stranded_DNA_chromosome
954
+ 0000959 linear_single_stranded_DNA_chromosome
955
+ 0000960 circular_single_stranded_DNA_chromosome
956
+ 0000961 RNA_chromosome
957
+ 0000962 single_stranded_RNA_chromosome
958
+ 0000963 linear_single_stranded_RNA_chromosome
959
+ 0000964 linear_double_stranded_RNA_chromosome
960
+ 0000965 double_stranded_RNA_chromosome
961
+ 0000966 circular_single_stranded_RNA_chromosome
962
+ 0000967 circular_double_stranded_RNA_chromosome
963
+ 0000968 sequence_replication_mode
964
+ 0000969 rolling_circle
965
+ 0000970 theta_replication
966
+ 0000971 DNA_replication_mode
967
+ 0000972 RNA_replication_mode
968
+ 0000973 insertion_sequence
969
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970
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971
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972
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973
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974
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975
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976
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977
+ 0000983 strand_attribute
978
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979
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980
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981
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982
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983
+ 0000989 class_II_RNA
984
+ 0000990 class_I_RNA
985
+ 0000991 genomic_DNA
986
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987
+ 0000993 consensus
988
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989
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990
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991
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992
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993
+ 0000999 BAC_end
994
+ 0001000 cytosolic_16S_rRNA
995
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996
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997
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998
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999
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1000
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1001
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1002
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1003
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1004
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1005
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1006
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1007
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1008
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1009
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1010
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1011
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1012
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1013
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1014
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1015
+ 0001021 chromosome_breakpoint
1016
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1017
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1018
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1019
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1020
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1021
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1022
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1023
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1024
+ 0001030 forward
1025
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1026
+ 0001032 mitochondrial_DNA
1027
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1028
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1029
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1030
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1031
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1032
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1033
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1034
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1035
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1036
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1037
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1038
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1039
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1040
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1041
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1042
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1043
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1044
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1045
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1046
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1047
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1048
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1049
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1050
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1051
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1052
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1053
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1054
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1055
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1056
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1057
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1058
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1059
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1060
+ 0001067 polypeptide_motif
1061
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1062
+ 0001070 polypeptide_structural_region
1063
+ 0001071 membrane_structure
1064
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1065
+ 0001073 cytoplasmic_polypeptide_region
1066
+ 0001074 non_cytoplasmic_polypeptide_region
1067
+ 0001075 intramembrane_polypeptide_region
1068
+ 0001076 membrane_peptide_loop
1069
+ 0001077 transmembrane_polypeptide_region
1070
+ 0001078 polypeptide_secondary_structure
1071
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1072
+ 0001080 coiled_coil
1073
+ 0001081 helix_turn_helix
1074
+ 0001082 polypeptide_sequencing_information
1075
+ 0001083 non_adjacent_residues
1076
+ 0001084 non_terminal_residue
1077
+ 0001085 sequence_conflict
1078
+ 0001086 sequence_uncertainty
1079
+ 0001087 cross_link
1080
+ 0001088 disulfide_bond
1081
+ 0001089 post_translationally_modified_region
1082
+ 0001090 covalent_binding_site
1083
+ 0001091 non_covalent_binding_site
1084
+ 0001092 polypeptide_metal_contact
1085
+ 0001093 protein_protein_contact
1086
+ 0001094 polypeptide_calcium_ion_contact_site
1087
+ 0001095 polypeptide_cobalt_ion_contact_site
1088
+ 0001096 polypeptide_copper_ion_contact_site
1089
+ 0001097 polypeptide_iron_ion_contact_site
1090
+ 0001098 polypeptide_magnesium_ion_contact_site
1091
+ 0001099 polypeptide_manganese_ion_contact_site
1092
+ 0001100 polypeptide_molybdenum_ion_contact_site
1093
+ 0001101 polypeptide_nickel_ion_contact_site
1094
+ 0001102 polypeptide_tungsten_ion_contact_site
1095
+ 0001103 polypeptide_zinc_ion_contact_site
1096
+ 0001104 catalytic_residue
1097
+ 0001105 polypeptide_ligand_contact
1098
+ 0001106 asx_motif
1099
+ 0001107 beta_bulge
1100
+ 0001108 beta_bulge_loop
1101
+ 0001109 beta_bulge_loop_five
1102
+ 0001110 beta_bulge_loop_six
1103
+ 0001111 beta_strand
1104
+ 0001112 antiparallel_beta_strand
1105
+ 0001113 parallel_beta_strand
1106
+ 0001114 peptide_helix
1107
+ 0001115 left_handed_peptide_helix
1108
+ 0001116 right_handed_peptide_helix
1109
+ 0001117 alpha_helix
1110
+ 0001118 pi_helix
1111
+ 0001119 three_ten_helix
1112
+ 0001120 polypeptide_nest_motif
1113
+ 0001121 polypeptide_nest_left_right_motif
1114
+ 0001122 polypeptide_nest_right_left_motif
1115
+ 0001123 schellmann_loop
1116
+ 0001124 schellmann_loop_seven
1117
+ 0001125 schellmann_loop_six
1118
+ 0001126 serine_threonine_motif
1119
+ 0001127 serine_threonine_staple_motif
1120
+ 0001128 polypeptide_turn_motif
1121
+ 0001129 asx_turn_left_handed_type_one
1122
+ 0001130 asx_turn_left_handed_type_two
1123
+ 0001131 asx_turn_right_handed_type_two
1124
+ 0001132 asx_turn_right_handed_type_one
1125
+ 0001133 beta_turn
1126
+ 0001134 beta_turn_left_handed_type_one
1127
+ 0001135 beta_turn_left_handed_type_two
1128
+ 0001136 beta_turn_right_handed_type_one
1129
+ 0001137 beta_turn_right_handed_type_two
1130
+ 0001138 gamma_turn
1131
+ 0001139 gamma_turn_classic
1132
+ 0001140 gamma_turn_inverse
1133
+ 0001141 serine_threonine_turn
1134
+ 0001142 st_turn_left_handed_type_one
1135
+ 0001143 st_turn_left_handed_type_two
1136
+ 0001144 st_turn_right_handed_type_one
1137
+ 0001145 st_turn_right_handed_type_two
1138
+ 0001146 polypeptide_variation_site
1139
+ 0001147 natural_variant_site
1140
+ 0001148 mutated_variant_site
1141
+ 0001149 alternate_sequence_site
1142
+ 0001150 beta_turn_type_six
1143
+ 0001151 beta_turn_type_six_a
1144
+ 0001152 beta_turn_type_six_a_one
1145
+ 0001153 beta_turn_type_six_a_two
1146
+ 0001154 beta_turn_type_six_b
1147
+ 0001155 beta_turn_type_eight
1148
+ 0001156 DRE_motif
1149
+ 0001157 DMv4_motif
1150
+ 0001158 E_box_motif
1151
+ 0001159 DMv5_motif
1152
+ 0001160 DMv3_motif
1153
+ 0001161 DMv2_motif
1154
+ 0001162 MTE
1155
+ 0001163 INR1_motif
1156
+ 0001164 DPE1_motif
1157
+ 0001165 DMv1_motif
1158
+ 0001166 GAGA_motif
1159
+ 0001167 NDM2_motif
1160
+ 0001168 NDM3_motif
1161
+ 0001169 ds_RNA_viral_sequence
1162
+ 0001170 polinton
1163
+ 0001171 rRNA_21S
1164
+ 0001172 tRNA_region
1165
+ 0001173 anticodon_loop
1166
+ 0001174 anticodon
1167
+ 0001175 CCA_tail
1168
+ 0001176 DHU_loop
1169
+ 0001177 T_loop
1170
+ 0001178 pyrrolysine_tRNA_primary_transcript
1171
+ 0001179 U3_snoRNA
1172
+ 0001180 AU_rich_element
1173
+ 0001181 Bruno_response_element
1174
+ 0001182 iron_responsive_element
1175
+ 0001183 morpholino_backbone
1176
+ 0001184 PNA
1177
+ 0001185 enzymatic
1178
+ 0001186 ribozymic
1179
+ 0001187 pseudouridylation_guide_snoRNA
1180
+ 0001188 LNA
1181
+ 0001189 LNA_oligo
1182
+ 0001190 TNA
1183
+ 0001191 TNA_oligo
1184
+ 0001192 GNA
1185
+ 0001193 GNA_oligo
1186
+ 0001194 R_GNA
1187
+ 0001195 R_GNA_oligo
1188
+ 0001196 S_GNA
1189
+ 0001197 S_GNA_oligo
1190
+ 0001198 ds_DNA_viral_sequence
1191
+ 0001199 ss_RNA_viral_sequence
1192
+ 0001200 negative_sense_ssRNA_viral_sequence
1193
+ 0001201 positive_sense_ssRNA_viral_sequence
1194
+ 0001202 ambisense_ssRNA_viral_sequence
1195
+ 0001203 RNA_polymerase_promoter
1196
+ 0001204 Phage_RNA_Polymerase_Promoter
1197
+ 0001205 SP6_RNA_Polymerase_Promoter
1198
+ 0001206 T3_RNA_Polymerase_Promoter
1199
+ 0001207 T7_RNA_Polymerase_Promoter
1200
+ 0001208 five_prime_EST
1201
+ 0001209 three_prime_EST
1202
+ 0001210 translational_frameshift
1203
+ 0001211 plus_1_translational_frameshift
1204
+ 0001212 plus_2_translational_frameshift
1205
+ 0001213 group_III_intron
1206
+ 0001214 noncoding_region_of_exon
1207
+ 0001215 coding_region_of_exon
1208
+ 0001216 endonuclease_spliced_intron
1209
+ 0001217 protein_coding_gene
1210
+ 0001218 transgenic_insertion
1211
+ 0001219 retrogene
1212
+ 0001220 silenced_by_RNA_interference
1213
+ 0001221 silenced_by_histone_modification
1214
+ 0001222 silenced_by_histone_methylation
1215
+ 0001223 silenced_by_histone_deacetylation
1216
+ 0001224 gene_silenced_by_RNA_interference
1217
+ 0001225 gene_silenced_by_histone_modification
1218
+ 0001226 gene_silenced_by_histone_methylation
1219
+ 0001227 gene_silenced_by_histone_deacetylation
1220
+ 0001228 dihydrouridine
1221
+ 0001229 pseudouridine
1222
+ 0001230 inosine
1223
+ 0001231 seven_methylguanine
1224
+ 0001232 ribothymidine
1225
+ 0001233 methylinosine
1226
+ 0001234 mobile
1227
+ 0001235 replicon
1228
+ 0001236 base
1229
+ 0001237 amino_acid
1230
+ 0001238 major_TSS
1231
+ 0001239 minor_TSS
1232
+ 0001240 TSS_region
1233
+ 0001241 encodes_alternate_transcription_start_sites
1234
+ 0001243 miRNA_primary_transcript_region
1235
+ 0001244 pre_miRNA
1236
+ 0001245 miRNA_stem
1237
+ 0001246 miRNA_loop
1238
+ 0001247 synthetic_oligo
1239
+ 0001248 assembly
1240
+ 0001249 fragment_assembly
1241
+ 0001250 fingerprint_map
1242
+ 0001251 STS_map
1243
+ 0001252 RH_map
1244
+ 0001253 sonicate_fragment
1245
+ 0001254 polyploid
1246
+ 0001255 autopolyploid
1247
+ 0001256 allopolyploid
1248
+ 0001257 homing_endonuclease_binding_site
1249
+ 0001258 octamer_motif
1250
+ 0001259 apicoplast_chromosome
1251
+ 0001260 sequence_collection
1252
+ 0001261 overlapping_feature_set
1253
+ 0001262 overlapping_EST_set
1254
+ 0001263 ncRNA_gene
1255
+ 0001264 gRNA_gene
1256
+ 0001265 miRNA_gene
1257
+ 0001266 scRNA_gene
1258
+ 0001267 snoRNA_gene
1259
+ 0001268 snRNA_gene
1260
+ 0001269 SRP_RNA_gene
1261
+ 0001271 tmRNA_gene
1262
+ 0001272 tRNA_gene
1263
+ 0001273 modified_adenosine
1264
+ 0001274 modified_inosine
1265
+ 0001275 modified_cytidine
1266
+ 0001276 modified_guanosine
1267
+ 0001277 modified_uridine
1268
+ 0001278 one_methylinosine
1269
+ 0001279 one_two_prime_O_dimethylinosine
1270
+ 0001280 two_prime_O_methylinosine
1271
+ 0001281 three_methylcytidine
1272
+ 0001282 five_methylcytidine
1273
+ 0001283 two_prime_O_methylcytidine
1274
+ 0001284 two_thiocytidine
1275
+ 0001285 N4_acetylcytidine
1276
+ 0001286 five_formylcytidine
1277
+ 0001287 five_two_prime_O_dimethylcytidine
1278
+ 0001288 N4_acetyl_2_prime_O_methylcytidine
1279
+ 0001289 lysidine
1280
+ 0001290 N4_methylcytidine
1281
+ 0001291 N4_2_prime_O_dimethylcytidine
1282
+ 0001292 five_hydroxymethylcytidine
1283
+ 0001293 five_formyl_two_prime_O_methylcytidine
1284
+ 0001294 N4_N4_2_prime_O_trimethylcytidine
1285
+ 0001295 one_methyladenosine
1286
+ 0001296 two_methyladenosine
1287
+ 0001297 N6_methyladenosine
1288
+ 0001298 two_prime_O_methyladenosine
1289
+ 0001299 two_methylthio_N6_methyladenosine
1290
+ 0001300 N6_isopentenyladenosine
1291
+ 0001301 two_methylthio_N6_isopentenyladenosine
1292
+ 0001302 N6_cis_hydroxyisopentenyl_adenosine
1293
+ 0001303 two_methylthio_N6_cis_hydroxyisopentenyl_adenosine
1294
+ 0001304 N6_glycinylcarbamoyladenosine
1295
+ 0001305 N6_threonylcarbamoyladenosine
1296
+ 0001306 two_methylthio_N6_threonyl_carbamoyladenosine
1297
+ 0001307 N6_methyl_N6_threonylcarbamoyladenosine
1298
+ 0001308 N6_hydroxynorvalylcarbamoyladenosine
1299
+ 0001309 two_methylthio_N6_hydroxynorvalyl_carbamoyladenosine
1300
+ 0001310 two_prime_O_ribosyladenosine_phosphate
1301
+ 0001311 N6_N6_dimethyladenosine
1302
+ 0001312 N6_2_prime_O_dimethyladenosine
1303
+ 0001313 N6_N6_2_prime_O_trimethyladenosine
1304
+ 0001314 one_two_prime_O_dimethyladenosine
1305
+ 0001315 N6_acetyladenosine
1306
+ 0001316 seven_deazaguanosine
1307
+ 0001317 queuosine
1308
+ 0001318 epoxyqueuosine
1309
+ 0001319 galactosyl_queuosine
1310
+ 0001320 mannosyl_queuosine
1311
+ 0001321 seven_cyano_seven_deazaguanosine
1312
+ 0001322 seven_aminomethyl_seven_deazaguanosine
1313
+ 0001323 archaeosine
1314
+ 0001324 one_methylguanosine
1315
+ 0001325 N2_methylguanosine
1316
+ 0001326 seven_methylguanosine
1317
+ 0001327 two_prime_O_methylguanosine
1318
+ 0001328 N2_N2_dimethylguanosine
1319
+ 0001329 N2_2_prime_O_dimethylguanosine
1320
+ 0001330 N2_N2_2_prime_O_trimethylguanosine
1321
+ 0001331 two_prime_O_ribosylguanosine_phosphate
1322
+ 0001332 wybutosine
1323
+ 0001333 peroxywybutosine
1324
+ 0001334 hydroxywybutosine
1325
+ 0001335 undermodified_hydroxywybutosine
1326
+ 0001336 wyosine
1327
+ 0001337 methylwyosine
1328
+ 0001338 N2_7_dimethylguanosine
1329
+ 0001339 N2_N2_7_trimethylguanosine
1330
+ 0001340 one_two_prime_O_dimethylguanosine
1331
+ 0001341 four_demethylwyosine
1332
+ 0001342 isowyosine
1333
+ 0001343 N2_7_2prirme_O_trimethylguanosine
1334
+ 0001344 five_methyluridine
1335
+ 0001345 two_prime_O_methyluridine
1336
+ 0001346 five_two_prime_O_dimethyluridine
1337
+ 0001347 one_methylpseudouridine
1338
+ 0001348 two_prime_O_methylpseudouridine
1339
+ 0001349 two_thiouridine
1340
+ 0001350 four_thiouridine
1341
+ 0001351 five_methyl_2_thiouridine
1342
+ 0001352 two_thio_two_prime_O_methyluridine
1343
+ 0001353 three_three_amino_three_carboxypropyl_uridine
1344
+ 0001354 five_hydroxyuridine
1345
+ 0001355 five_methoxyuridine
1346
+ 0001356 uridine_five_oxyacetic_acid
1347
+ 0001357 uridine_five_oxyacetic_acid_methyl_ester
1348
+ 0001358 five_carboxyhydroxymethyl_uridine
1349
+ 0001359 five_carboxyhydroxymethyl_uridine_methyl_ester
1350
+ 0001360 five_methoxycarbonylmethyluridine
1351
+ 0001361 five_methoxycarbonylmethyl_two_prime_O_methyluridine
1352
+ 0001362 five_methoxycarbonylmethyl_two_thiouridine
1353
+ 0001363 five_aminomethyl_two_thiouridine
1354
+ 0001364 five_methylaminomethyluridine
1355
+ 0001365 five_methylaminomethyl_two_thiouridine
1356
+ 0001366 five_methylaminomethyl_two_selenouridine
1357
+ 0001367 five_carbamoylmethyluridine
1358
+ 0001368 five_carbamoylmethyl_two_prime_O_methyluridine
1359
+ 0001369 five_carboxymethylaminomethyluridine
1360
+ 0001370 five_carboxymethylaminomethyl_two_prime_O_methyluridine
1361
+ 0001371 five_carboxymethylaminomethyl_two_thiouridine
1362
+ 0001372 three_methyluridine
1363
+ 0001373 one_methyl_three_three_amino_three_carboxypropyl_pseudouridine
1364
+ 0001374 five_carboxymethyluridine
1365
+ 0001375 three_two_prime_O_dimethyluridine
1366
+ 0001376 five_methyldihydrouridine
1367
+ 0001377 three_methylpseudouridine
1368
+ 0001378 five_taurinomethyluridine
1369
+ 0001379 five_taurinomethyl_two_thiouridine
1370
+ 0001380 five_isopentenylaminomethyl_uridine
1371
+ 0001381 five_isopentenylaminomethyl_two_thiouridine
1372
+ 0001382 five_isopentenylaminomethyl_two_prime_O_methyluridine
1373
+ 0001383 histone_binding_site
1374
+ 0001384 CDS_fragment
1375
+ 0001385 modified_amino_acid_feature
1376
+ 0001386 modified_glycine
1377
+ 0001387 modified_L_alanine
1378
+ 0001388 modified_L_asparagine
1379
+ 0001389 modified_L_aspartic_acid
1380
+ 0001390 modified_L_cysteine
1381
+ 0001391 modified_L_glutamic_acid
1382
+ 0001392 modified_L_threonine
1383
+ 0001393 modified_L_tryptophan
1384
+ 0001394 modified_L_glutamine
1385
+ 0001395 modified_L_methionine
1386
+ 0001396 modified_L_isoleucine
1387
+ 0001397 modified_L_phenylalanine
1388
+ 0001398 modified_L_histidine
1389
+ 0001399 modified_L_serine
1390
+ 0001400 modified_L_lysine
1391
+ 0001401 modified_L_leucine
1392
+ 0001402 modified_L_selenocysteine
1393
+ 0001403 modified_L_valine
1394
+ 0001404 modified_L_proline
1395
+ 0001405 modified_L_tyrosine
1396
+ 0001406 modified_L_arginine
1397
+ 0001407 peptidyl
1398
+ 0001408 cleaved_for_gpi_anchor_region
1399
+ 0001409 biomaterial_region
1400
+ 0001410 experimental_feature
1401
+ 0001411 biological_region
1402
+ 0001412 topologically_defined_region
1403
+ 0001413 translocation_breakpoint
1404
+ 0001414 insertion_breakpoint
1405
+ 0001415 deletion_breakpoint
1406
+ 0001416 five_prime_flanking_region
1407
+ 0001417 three_prime_flanking_region
1408
+ 0001418 transcribed_fragment
1409
+ 0001419 cis_splice_site
1410
+ 0001420 trans_splice_site
1411
+ 0001421 splice_junction
1412
+ 0001422 conformational_switch
1413
+ 0001423 dye_terminator_read
1414
+ 0001424 pyrosequenced_read
1415
+ 0001425 ligation_based_read
1416
+ 0001426 polymerase_synthesis_read
1417
+ 0001427 cis_regulatory_frameshift_element
1418
+ 0001428 expressed_sequence_assembly
1419
+ 0001429 DNA_binding_site
1420
+ 0001431 cryptic_gene
1421
+ 0001432 sequence_variant_affecting_polyadenylation
1422
+ 0001433 three_prime_RACE_clone
1423
+ 0001434 cassette_pseudogene
1424
+ 0001435 alanine
1425
+ 0001436 valine
1426
+ 0001437 leucine
1427
+ 0001438 isoleucine
1428
+ 0001439 proline
1429
+ 0001440 tryptophan
1430
+ 0001441 phenylalanine
1431
+ 0001442 methionine
1432
+ 0001443 glycine
1433
+ 0001444 serine
1434
+ 0001445 threonine
1435
+ 0001446 tyrosine
1436
+ 0001447 cysteine
1437
+ 0001448 glutamine
1438
+ 0001449 asparagine
1439
+ 0001450 lysine
1440
+ 0001451 arginine
1441
+ 0001452 histidine
1442
+ 0001453 aspartic_acid
1443
+ 0001454 glutamic_acid
1444
+ 0001455 selenocysteine
1445
+ 0001456 pyrrolysine
1446
+ 0001457 transcribed_cluster
1447
+ 0001458 unigene_cluster
1448
+ 0001459 CRISPR
1449
+ 0001460 insulator_binding_site
1450
+ 0001461 enhancer_binding_site
1451
+ 0001462 contig_collection
1452
+ 0001463 lincRNA
1453
+ 0001464 UST
1454
+ 0001465 three_prime_UST
1455
+ 0001466 five_prime_UST
1456
+ 0001467 RST
1457
+ 0001468 three_prime_RST
1458
+ 0001469 five_prime_RST
1459
+ 0001470 UST_match
1460
+ 0001471 RST_match
1461
+ 0001472 primer_match
1462
+ 0001473 miRNA_antiguide
1463
+ 0001474 trans_splice_junction
1464
+ 0001475 outron
1465
+ 0001476 natural_plasmid
1466
+ 0001477 gene_trap_construct
1467
+ 0001478 promoter_trap_construct
1468
+ 0001479 enhancer_trap_construct
1469
+ 0001480 PAC_end
1470
+ 0001481 RAPD
1471
+ 0001482 shadow_enhancer
1472
+ 0001483 SNV
1473
+ 0001484 X_element_combinatorial_repeat
1474
+ 0001485 Y_prime_element
1475
+ 0001486 standard_draft
1476
+ 0001487 high_quality_draft
1477
+ 0001488 improved_high_quality_draft
1478
+ 0001489 annotation_directed_improved_draft
1479
+ 0001490 noncontiguous_finished
1480
+ 0001491 finished_genome
1481
+ 0001492 intronic_regulatory_region
1482
+ 0001493 centromere_DNA_Element_I
1483
+ 0001494 centromere_DNA_Element_II
1484
+ 0001495 centromere_DNA_Element_III
1485
+ 0001496 telomeric_repeat
1486
+ 0001497 X_element
1487
+ 0001498 YAC_end
1488
+ 0001499 whole_genome_sequence_status
1489
+ 0001500 heritable_phenotypic_marker
1490
+ 0001501 peptide_collection
1491
+ 0001502 high_identity_region
1492
+ 0001503 processed_transcript
1493
+ 0001504 assortment_derived_variation
1494
+ 0001505 reference_genome
1495
+ 0001506 variant_genome
1496
+ 0001507 variant_collection
1497
+ 0001508 alteration_attribute
1498
+ 0001509 chromosomal_variation_attribute
1499
+ 0001510 intrachromosomal
1500
+ 0001511 interchromosomal
1501
+ 0001512 insertion_attribute
1502
+ 0001513 tandem
1503
+ 0001514 direct
1504
+ 0001515 inverted
1505
+ 0001516 free
1506
+ 0001517 inversion_attribute
1507
+ 0001518 pericentric
1508
+ 0001519 paracentric
1509
+ 0001520 translocaton_attribute
1510
+ 0001521 reciprocal
1511
+ 0001522 insertional
1512
+ 0001523 duplication_attribute
1513
+ 0001524 chromosomally_aberrant_genome
1514
+ 0001525 assembly_error_correction
1515
+ 0001526 base_call_error_correction
1516
+ 0001527 peptide_localization_signal
1517
+ 0001528 nuclear_localization_signal
1518
+ 0001529 endosomal_localization_signal
1519
+ 0001530 lysosomal_localization_signal
1520
+ 0001531 nuclear_export_signal
1521
+ 0001532 recombination_signal_sequence
1522
+ 0001533 cryptic_splice_site
1523
+ 0001534 nuclear_rim_localization_signal
1524
+ 0001535 P_TIR_transposon
1525
+ 0001536 functional_effect_variant
1526
+ 0001537 structural_variant
1527
+ 0001538 transcript_function_variant
1528
+ 0001539 translational_product_function_variant
1529
+ 0001540 level_of_transcript_variant
1530
+ 0001541 decreased_transcript_level_variant
1531
+ 0001542 increased_transcript_level_variant
1532
+ 0001543 transcript_processing_variant
1533
+ 0001544 editing_variant
1534
+ 0001545 polyadenylation_variant
1535
+ 0001546 transcript_stability_variant
1536
+ 0001547 decreased_transcript_stability_variant
1537
+ 0001548 increased_transcript_stability_variant
1538
+ 0001549 transcription_variant
1539
+ 0001550 rate_of_transcription_variant
1540
+ 0001551 increased_transcription_rate_variant
1541
+ 0001552 decreased_transcription_rate_variant
1542
+ 0001553 translational_product_level_variant
1543
+ 0001554 polypeptide_function_variant
1544
+ 0001555 decreased_translational_product_level
1545
+ 0001556 increased_translational_product_level
1546
+ 0001557 polypeptide_gain_of_function_variant
1547
+ 0001558 polypeptide_localization_variant
1548
+ 0001559 polypeptide_loss_of_function_variant
1549
+ 0001560 inactive_ligand_binding_site
1550
+ 0001561 polypeptide_partial_loss_of_function
1551
+ 0001562 polypeptide_post_translational_processing_variant
1552
+ 0001563 copy_number_change
1553
+ 0001564 gene_variant
1554
+ 0001565 gene_fusion
1555
+ 0001566 regulatory_region_variant
1556
+ 0001567 stop_retained_variant
1557
+ 0001568 splicing_variant
1558
+ 0001569 cryptic_splice_site_variant
1559
+ 0001570 cryptic_splice_acceptor
1560
+ 0001571 cryptic_splice_donor
1561
+ 0001572 exon_loss_variant
1562
+ 0001573 intron_gain_variant
1563
+ 0001574 splice_acceptor_variant
1564
+ 0001575 splice_donor_variant
1565
+ 0001576 transcript_variant
1566
+ 0001577 complex_transcript_variant
1567
+ 0001578 stop_lost
1568
+ 0001579 transcript_sequence_variant
1569
+ 0001580 coding_sequence_variant
1570
+ 0001582 initiator_codon_variant
1571
+ 0001583 missense_variant
1572
+ 0001585 conservative_missense_variant
1573
+ 0001586 non_conservative_missense_variant
1574
+ 0001587 stop_gained
1575
+ 0001589 frameshift_variant
1576
+ 0001590 terminator_codon_variant
1577
+ 0001591 frame_restoring_variant
1578
+ 0001592 minus_1_frameshift_variant
1579
+ 0001593 minus_2_frameshift_variant
1580
+ 0001594 plus_1_frameshift_variant
1581
+ 0001595 plus_2_frameshift_variant
1582
+ 0001596 transcript_secondary_structure_variant
1583
+ 0001597 compensatory_transcript_secondary_structure_variant
1584
+ 0001598 translational_product_structure_variant
1585
+ 0001599 3D_polypeptide_structure_variant
1586
+ 0001600 complex_3D_structural_variant
1587
+ 0001601 conformational_change_variant
1588
+ 0001602 complex_change_of_translational_product_variant
1589
+ 0001603 polypeptide_sequence_variant
1590
+ 0001604 amino_acid_deletion
1591
+ 0001605 amino_acid_insertion
1592
+ 0001606 amino_acid_substitution
1593
+ 0001607 conservative_amino_acid_substitution
1594
+ 0001608 non_conservative_amino_acid_substitution
1595
+ 0001609 elongated_polypeptide
1596
+ 0001610 elongated_polypeptide_C_terminal
1597
+ 0001611 elongated_polypeptide_N_terminal
1598
+ 0001612 elongated_in_frame_polypeptide_C_terminal
1599
+ 0001613 elongated_out_of_frame_polypeptide_C_terminal
1600
+ 0001614 elongated_in_frame_polypeptide_N_terminal_elongation
1601
+ 0001615 elongated_out_of_frame_polypeptide_N_terminal
1602
+ 0001616 polypeptide_fusion
1603
+ 0001617 polypeptide_truncation
1604
+ 0001618 inactive_catalytic_site
1605
+ 0001619 non_coding_transcript_variant
1606
+ 0001620 mature_miRNA_variant
1607
+ 0001621 NMD_transcript_variant
1608
+ 0001622 UTR_variant
1609
+ 0001623 5_prime_UTR_variant
1610
+ 0001624 3_prime_UTR_variant
1611
+ 0001626 incomplete_terminal_codon_variant
1612
+ 0001627 intron_variant
1613
+ 0001628 intergenic_variant
1614
+ 0001629 splice_site_variant
1615
+ 0001630 splice_region_variant
1616
+ 0001631 upstream_gene_variant
1617
+ 0001632 downstream_gene_variant
1618
+ 0001633 5KB_downstream_variant
1619
+ 0001634 500B_downstream_variant
1620
+ 0001635 5KB_upstream_variant
1621
+ 0001636 2KB_upstream_variant
1622
+ 0001637 rRNA_gene
1623
+ 0001638 piRNA_gene
1624
+ 0001639 RNase_P_RNA_gene
1625
+ 0001640 RNase_MRP_RNA_gene
1626
+ 0001641 lincRNA_gene
1627
+ 0001642 mathematically_defined_repeat
1628
+ 0001643 telomerase_RNA_gene
1629
+ 0001644 targeting_vector
1630
+ 0001645 genetic_marker
1631
+ 0001646 DArT_marker
1632
+ 0001647 kozak_sequence
1633
+ 0001648 nested_transposon
1634
+ 0001649 nested_repeat
1635
+ 0001650 inframe_variant
1636
+ 0001653 retinoic_acid_responsive_element
1637
+ 0001654 nucleotide_to_protein_binding_site
1638
+ 0001655 nucleotide_binding_site
1639
+ 0001656 metal_binding_site
1640
+ 0001657 ligand_binding_site
1641
+ 0001658 nested_tandem_repeat
1642
+ 0001659 promoter_element
1643
+ 0001660 core_eukaryotic_promoter_element
1644
+ 0001661 RNA_polymerase_II_TATA_box
1645
+ 0001662 RNA_polymerase_III_TATA_box
1646
+ 0001663 BREd_motif
1647
+ 0001664 DCE
1648
+ 0001665 DCE_SI
1649
+ 0001666 DCE_SII
1650
+ 0001667 DCE_SIII
1651
+ 0001668 proximal_promoter_element
1652
+ 0001669 RNApol_II_core_promoter
1653
+ 0001670 distal_promoter_element
1654
+ 0001671 bacterial_RNApol_promoter_sigma_70_element
1655
+ 0001672 bacterial_RNApol_promoter_sigma54_element
1656
+ 0001673 minus_12_signal
1657
+ 0001674 minus_24_signal
1658
+ 0001675 A_box_type_1
1659
+ 0001676 A_box_type_2
1660
+ 0001677 intermediate_element
1661
+ 0001678 regulatory_promoter_element
1662
+ 0001679 transcription_regulatory_region
1663
+ 0001680 translation_regulatory_region
1664
+ 0001681 recombination_regulatory_region
1665
+ 0001682 replication_regulatory_region
1666
+ 0001683 sequence_motif
1667
+ 0001684 experimental_feature_attribute
1668
+ 0001685 score
1669
+ 0001686 quality_value
1670
+ 0001687 restriction_enzyme_recognition_site
1671
+ 0001688 restriction_enzyme_cleavage_junction
1672
+ 0001689 five_prime_restriction_enzyme_junction
1673
+ 0001690 three_prime_restriction_enzyme_junction
1674
+ 0001691 blunt_end_restriction_enzyme_cleavage_site
1675
+ 0001692 sticky_end_restriction_enzyme_cleavage_site
1676
+ 0001693 blunt_end_restriction_enzyme_cleavage_junction
1677
+ 0001694 single_strand_restriction_enzyme_cleavage_site
1678
+ 0001695 restriction_enzyme_single_strand_overhang
1679
+ 0001696 experimentally_defined_binding_region
1680
+ 0001697 ChIP_seq_region
1681
+ 0001698 ASPE_primer
1682
+ 0001699 dCAPS_primer
1683
+ 0001700 histone_modification
1684
+ 0001701 histone_methylation_site
1685
+ 0001702 histone_acetylation_site
1686
+ 0001703 H3K9_acetylation_site
1687
+ 0001704 H3K14_acetylation_site
1688
+ 0001705 H3K4_monomethylation_site
1689
+ 0001706 H3K4_trimethylation
1690
+ 0001707 H3K9_trimethylation_site
1691
+ 0001708 H3K27_monomethylation_site
1692
+ 0001709 H3K27_trimethylation_site
1693
+ 0001710 H3K79_monomethylation_site
1694
+ 0001711 H3K79_dimethylation_site
1695
+ 0001712 H3K79_trimethylation_site
1696
+ 0001713 H4K20_monomethylation_site
1697
+ 0001714 H2BK5_monomethylation_site
1698
+ 0001715 ISRE
1699
+ 0001716 histone_ubiqitination_site
1700
+ 0001717 H2B_ubiquitination_site
1701
+ 0001718 H3K18_acetylation_site
1702
+ 0001719 H3K23_acetylation_site
1703
+ 0001720 epigenetically_modified_region
1704
+ 0001721 H3K27_acylation_site
1705
+ 0001722 H3K36_monomethylation_site
1706
+ 0001723 H3K36_dimethylation_site
1707
+ 0001724 H3K36_trimethylation_site
1708
+ 0001725 H3K4_dimethylation_site
1709
+ 0001726 H3K27_dimethylation_site
1710
+ 0001727 H3K9_monomethylation_site
1711
+ 0001728 H3K9_dimethylation_site
1712
+ 0001729 H4K16_acetylation_site
1713
+ 0001730 H4K5_acetylation_site
1714
+ 0001731 H4K8_acetylation_site
1715
+ 0001732 H3K27_methylation_site
1716
+ 0001733 H3K36_methylation_site
1717
+ 0001734 H3K4_methylation_site
1718
+ 0001735 H3K79_methylation_site
1719
+ 0001736 H3K9_methylation_site
1720
+ 0001737 histone_acylation_region
1721
+ 0001738 H4K_acylation_region
1722
+ 0001739 gene_with_non_canonical_start_codon
1723
+ 0001740 gene_with_start_codon_CUG
1724
+ 0001741 pseudogenic_gene_segment
1725
+ 0001742 copy_number_gain
1726
+ 0001743 copy_number_loss
1727
+ 0001744 UPD
1728
+ 0001745 maternal_uniparental_disomy
1729
+ 0001746 paternal_uniparental_disomy
1730
+ 0001747 open_chromatin_region
1731
+ 0001748 SL3_acceptor_site
1732
+ 0001749 SL4_acceptor_site
1733
+ 0001750 SL5_acceptor_site
1734
+ 0001751 SL6_acceptor_site
1735
+ 0001752 SL7_acceptor_site
1736
+ 0001753 SL8_acceptor_site
1737
+ 0001754 SL9_acceptor_site
1738
+ 0001755 SL10_acceptor_site
1739
+ 0001756 SL11_acceptor_site
1740
+ 0001757 SL12_acceptor_site
1741
+ 0001758 duplicated_pseudogene
1742
+ 0001759 unitary_pseudogene
1743
+ 0001760 non_processed_pseudogene
1744
+ 0001761 variant_quality
1745
+ 0001762 variant_origin
1746
+ 0001763 variant_frequency
1747
+ 0001764 unique_variant
1748
+ 0001765 rare_variant
1749
+ 0001766 polymorphic_variant
1750
+ 0001767 common_variant
1751
+ 0001768 fixed_variant
1752
+ 0001769 variant_phenotype
1753
+ 0001770 benign_variant
1754
+ 0001771 disease_associated_variant
1755
+ 0001772 disease_causing_variant
1756
+ 0001773 lethal_variant
1757
+ 0001774 quantitative_variant
1758
+ 0001775 maternal_variant
1759
+ 0001776 paternal_variant
1760
+ 0001777 somatic_variant
1761
+ 0001778 germline_variant
1762
+ 0001779 pedigree_specific_variant
1763
+ 0001780 population_specific_variant
1764
+ 0001781 de_novo_variant
1765
+ 0001782 TF_binding_site_variant
1766
+ 0001784 complex_structural_alteration
1767
+ 0001785 structural_alteration
1768
+ 0001786 loss_of_heterozygosity
1769
+ 0001787 splice_donor_5th_base_variant
1770
+ 0001788 U_box
1771
+ 0001789 mating_type_region
1772
+ 0001790 paired_end_fragment
1773
+ 0001791 exon_variant
1774
+ 0001792 non_coding_transcript_exon_variant
1775
+ 0001793 clone_end
1776
+ 0001794 point_centromere
1777
+ 0001795 regional_centromere
1778
+ 0001796 regional_centromere_central_core
1779
+ 0001797 centromeric_repeat
1780
+ 0001798 regional_centromere_inner_repeat_region
1781
+ 0001799 regional_centromere_outer_repeat_region
1782
+ 0001800 tasiRNA
1783
+ 0001801 tasiRNA_primary_transcript
1784
+ 0001802 increased_polyadenylation_variant
1785
+ 0001803 decreased_polyadenylation_variant
1786
+ 0001804 DDB_box
1787
+ 0001805 destruction_box
1788
+ 0001806 ER_retention_signal
1789
+ 0001807 KEN_box
1790
+ 0001808 mitochondrial_targeting_signal
1791
+ 0001809 signal_anchor
1792
+ 0001810 PIP_box
1793
+ 0001811 phosphorylation_site
1794
+ 0001812 transmembrane_helix
1795
+ 0001813 vacuolar_sorting_signal
1796
+ 0001814 coding_variant_quality
1797
+ 0001815 synonymous
1798
+ 0001816 non_synonymous
1799
+ 0001817 inframe
1800
+ 0001818 protein_altering_variant
1801
+ 0001819 synonymous_variant
1802
+ 0001820 inframe_indel
1803
+ 0001821 inframe_insertion
1804
+ 0001822 inframe_deletion
1805
+ 0001823 conservative_inframe_insertion
1806
+ 0001824 disruptive_inframe_insertion
1807
+ 0001825 conservative_inframe_deletion
1808
+ 0001826 disruptive_inframe_deletion
1809
+ 0001827 mRNA_read
1810
+ 0001828 genomic_DNA_read
1811
+ 0001829 mRNA_contig
1812
+ 0001830 AFLP_fragment
1813
+ 0001831 protein_hmm_match
1814
+ 0001832 immunoglobulin_region
1815
+ 0001833 V_region
1816
+ 0001834 C_region
1817
+ 0001835 N_region
1818
+ 0001836 S_region
1819
+ 0001837 mobile_element_insertion
1820
+ 0001838 novel_sequence_insertion
1821
+ 0001839 CSL_response_element
1822
+ 0001840 GATA_box
1823
+ 0001841 polymorphic_pseudogene
1824
+ 0001842 AP_1_binding_site
1825
+ 0001843 CRE
1826
+ 0001844 CuRE
1827
+ 0001845 DRE
1828
+ 0001846 FLEX_element
1829
+ 0001847 forkhead_motif
1830
+ 0001848 homol_D_box
1831
+ 0001849 homol_E_box
1832
+ 0001850 HSE
1833
+ 0001851 iron_repressed_GATA_element
1834
+ 0001852 mating_type_M_box
1835
+ 0001853 androgen_response_element
1836
+ 0001854 smFISH_probe
1837
+ 0001855 MCB
1838
+ 0001856 CCAAT_motif
1839
+ 0001857 Ace2_UAS
1840
+ 0001858 TR_box
1841
+ 0001859 STREP_motif
1842
+ 0001860 rDNA_intergenic_spacer_element
1843
+ 0001861 sterol_regulatory_element
1844
+ 0001862 GT_dinucleotide_repeat
1845
+ 0001863 GTT_trinucleotide_repeat
1846
+ 0001864 Sap1_recognition_motif
1847
+ 0001865 CDRE_motif
1848
+ 0001866 BAC_read_contig
1849
+ 0001867 candidate_gene
1850
+ 0001868 positional_candidate_gene
1851
+ 0001869 functional_candidate_gene
1852
+ 0001870 enhancerRNA
1853
+ 0001871 PCB
1854
+ 0001872 rearrangement_region
1855
+ 0001873 interchromosomal_breakpoint
1856
+ 0001874 intrachromosomal_breakpoint
1857
+ 0001875 unassigned_supercontig
1858
+ 0001876 partial_genomic_sequence_assembly
1859
+ 0001877 lncRNA
1860
+ 0001878 feature_variant
1861
+ 0001879 feature_ablation
1862
+ 0001880 feature_amplification
1863
+ 0001881 feature_translocation
1864
+ 0001882 feature_fusion
1865
+ 0001883 transcript_translocation
1866
+ 0001884 regulatory_region_translocation
1867
+ 0001885 TFBS_translocation
1868
+ 0001886 transcript_fusion
1869
+ 0001887 regulatory_region_fusion
1870
+ 0001888 TFBS_fusion
1871
+ 0001889 transcript_amplification
1872
+ 0001890 transcript_regulatory_region_fusion
1873
+ 0001891 regulatory_region_amplification
1874
+ 0001892 TFBS_amplification
1875
+ 0001893 transcript_ablation
1876
+ 0001894 regulatory_region_ablation
1877
+ 0001895 TFBS_ablation
1878
+ 0001896 transposable_element_CDS
1879
+ 0001897 transposable_element_pseudogene
1880
+ 0001898 dg_repeat
1881
+ 0001899 dh_repeat
1882
+ 0001901 AACCCT_box
1883
+ 0001902 splice_region
1884
+ 0001904 antisense_lncRNA
1885
+ 0001905 regional_centromere_outer_repeat_transcript
1886
+ 0001906 feature_truncation
1887
+ 0001907 feature_elongation
1888
+ 0001908 internal_feature_elongation
1889
+ 0001909 frameshift_elongation
1890
+ 0001910 frameshift_truncation
1891
+ 0001911 copy_number_increase
1892
+ 0001912 copy_number_decrease
1893
+ 0001913 bacterial_RNApol_promoter_sigma_ecf_element
1894
+ 0001914 rDNA_replication_fork_barrier
1895
+ 0001915 transcription_start_cluster
1896
+ 0001916 CAGE_tag
1897
+ 0001917 CAGE_cluster
1898
+ 0001918 5_methylcytosine
1899
+ 0001919 4_methylcytosine
1900
+ 0001920 N6_methyladenine
1901
+ 0001921 mitochondrial_contig
1902
+ 0001922 mitochondrial_supercontig
1903
+ 0001923 TERRA
1904
+ 0001924 ARRET
1905
+ 0001925 ARIA
1906
+ 0001926 anti_ARRET
1907
+ 0001927 telomeric_transcript
1908
+ 0001928 distal_duplication
1909
+ 0001929 mitochondrial_DNA_read
1910
+ 0001930 chloroplast_DNA_read
1911
+ 0001931 consensus_gDNA
1912
+ 0001932 restriction_enzyme_five_prime_single_strand_overhang
1913
+ 0001933 restriction_enzyme_three_prime_single_strand_overhang
1914
+ 0001934 monomeric_repeat
1915
+ 0001935 H3K20_trimethylation_site
1916
+ 0001936 H3K36_acetylation_site
1917
+ 0001937 H2BK12_acetylation_site
1918
+ 0001938 H2AK5_acetylation_site
1919
+ 0001939 H4K12_acetylation_site
1920
+ 0001940 H2BK120_acetylation_site
1921
+ 0001941 H4K91_acetylation_site
1922
+ 0001942 H2BK20_acetylation_site
1923
+ 0001943 H3K4_acetylation_site
1924
+ 0001944 H2AK9_acetylation_site
1925
+ 0001945 H3K56_acetylation_site
1926
+ 0001946 H2BK15_acetylation_site
1927
+ 0001947 H3R2_monomethylation_site
1928
+ 0001948 H3R2_dimethylation_site
1929
+ 0001949 H4R3_dimethylation_site
1930
+ 0001950 H4K4_trimethylation_site
1931
+ 0001951 H3K23_dimethylation_site
1932
+ 0001952 promoter_flanking_region
1933
+ 0001953 restriction_enzyme_assembly_scar
1934
+ 0001954 restriction_enzyme_region
1935
+ 0001955 protein_stability_element
1936
+ 0001956 protease_site
1937
+ 0001957 RNA_stability_element
1938
+ 0001958 lariat_intron
1939
+ 0001959 TCT_motif
1940
+ 0001960 5_hydroxymethylcytosine
1941
+ 0001961 5_formylcytosine
1942
+ 0001962 modified_adenine
1943
+ 0001963 modified_cytosine
1944
+ 0001964 modified_guanine
1945
+ 0001965 8_oxoguanine
1946
+ 0001966 5_carboxylcytosine
1947
+ 0001967 8_oxoadenine
1948
+ 0001968 coding_transcript_variant
1949
+ 0001969 coding_transcript_intron_variant
1950
+ 0001970 non_coding_transcript_intron_variant
1951
+ 0001971 zinc_finger_binding_site
1952
+ 0001972 histone_4_acetylation_site
1953
+ 0001973 histone_3_acetylation_site
1954
+ 0001974 CTCF_binding_site
1955
+ 0001975 five_prime_sticky_end_restriction_enzyme_cleavage_site
1956
+ 0001976 three_prime_sticky_end_restriction_enzyme_cleavage_site
1957
+ 0001977 ribonuclease_site
1958
+ 0001978 signature
1959
+ 0001979 RNA_stability_element
1960
+ 0001980 G_box
1961
+ 0001981 L_box
1962
+ 0001982 I-box
1963
+ 0001983 5_prime_UTR_premature_start_codon_variant
1964
+ 0001984 silent_mating_type_cassette_array
1965
+ 0001985 Okazaki_fragment
1966
+ 0001986 upstream_transcript_variant
1967
+ 0001987 downstream_transcript_variant
1968
+ 0001988 5_prime_UTR_premature_start_codon_gain_variant
1969
+ 0001989 5_prime_UTR_premature_start_codon_loss_variant
1970
+ 0001990 five_prime_UTR_premature_start_codon_location_variant
1971
+ 0001991 consensus_AFLP_fragment
1972
+ 0001992 nonsynonymous_variant
1973
+ 0001993 extended_cis_splice_site
1974
+ 0001994 intron_base_5
1975
+ 0001995 extended_intronic_splice_region_variant
1976
+ 0001996 extended_intronic_splice_region
1977
+ 0001997 subtelomere
1978
+ 0001998 sgRNA
1979
+ 0001999 mating_type_region_motif
1980
+ 0002001 Y_region
1981
+ 0002002 Z1_region
1982
+ 0002003 Z2_region
1983
+ 0002004 ARS_consensus_sequence
1984
+ 0002005 DSR_motif
1985
+ 0002006 zinc_repressed_element
1986
+ 0002007 MNV
1987
+ 0002008 rare_amino_acid_variant
1988
+ 0002009 selenocysteine_loss
1989
+ 0002010 pyrrolysine_loss
1990
+ 0002011 intragenic_variant
1991
+ 0002012 start_lost
1992
+ 0002013 5_prime_UTR_truncation
1993
+ 0002014 5_prime_UTR_elongation
1994
+ 0002015 3_prime_UTR_truncation
1995
+ 0002016 3_prime_UTR_elongation
1996
+ 0002017 conserved_intergenic_variant
1997
+ 0002018 conserved_intron_variant
1998
+ 0002019 start_retained_variant
1999
+ 0002020 boundary_element
2000
+ 0002021 mating_type_region_replication_fork_barrier
2001
+ 0002022 priRNA
2002
+ 0002023 multiplexing_sequence_identifier
2003
+ 0002024 W_region
2004
+ 0002025 cis_acting_homologous_chromosome_pairing_region
2005
+ 0002026 intein_encoding_region
2006
+ 0002027 uORF
2007
+ 0002028 sORF
2008
+ 0002029 tnaORF
2009
+ 0002030 X_region
2010
+ 0002031 shRNA
2011
+ 0002032 moR
2012
+ 0002033 loR
2013
+ 0002034 miR_encoding_snoRNA_primary_transcript
2014
+ 0002035 lncRNA_primary_transcript
2015
+ 0002036 miR_encoding_lncRNA_primary_transcript
2016
+ 0002037 miR_encoding_tRNA_primary_transcript
2017
+ 0002038 shRNA_primary_transcript
2018
+ 0002039 miR_encoding_shRNA_primary_transcript
2019
+ 0002040 vaultRNA_primary_transcript
2020
+ 0002041 miR_encoding_vaultRNA_primary_transcript
2021
+ 0002042 Y_RNA_primary_transcript
2022
+ 0002043 miR_encoding_Y_RNA_primary_transcript
2023
+ 0002044 TCS_element
2024
+ 0002045 pheromone_response_element
2025
+ 0002046 FRE
2026
+ 0002047 transcription_pause_site
2027
+ 0002048 disabled_reading_frame
2028
+ 0002049 H3K27_acetylation_site
2029
+ 0002050 constitutive_promoter
2030
+ 0002051 inducible_promoter
2031
+ 0002052 dominant_negative_variant
2032
+ 0002053 gain_of_function_variant
2033
+ 0002054 loss_of_function_variant
2034
+ 0002055 null_mutation
2035
+ 0002056 intronic_splicing_silencer
2036
+ 0002057 intronic_splicing_enhancer
2037
+ 0002058 exonic_splicing_silencer
2038
+ 0002059 recombination_enhancer
2039
+ 0002060 interchromosomal_translocation
2040
+ 0002061 intrachromosomal_translocation
2041
+ 0002062 complex_chromosomal_rearrangement
2042
+ 0002063 Alu_insertion
2043
+ 0002064 LINE1_insertion
2044
+ 0002065 SVA_insertion
2045
+ 0002066 mobile_element_deletion
2046
+ 0002067 HERV_deletion
2047
+ 0002068 SVA_deletion
2048
+ 0002069 LINE1_deletion
2049
+ 0002070 Alu_deletion
2050
+ 0002071 CDS_supported_by_peptide_spectrum_match
2051
+ 0002072 sequence_comparison
2052
+ 0002073 no_sequence_alteration
2053
+ 0002074 intergenic_1kb_variant
2054
+ 0002075 incomplete_transcript_variant
2055
+ 0002076 incomplete_transcript_3UTR_variant
2056
+ 0002077 incomplete_transcript_5UTR_variant
2057
+ 0002078 incomplete_transcript_intronic_variant
2058
+ 0002079 incomplete_transcript_splice_region_variant
2059
+ 0002080 incomplete_transcript_exonic_variant
2060
+ 0002081 incomplete_transcript_CDS
2061
+ 0002082 incomplete_transcript_coding_splice_variant
2062
+ 0002083 2KB_downstream_variant
2063
+ 0002084 exonic_splice_region_variant
2064
+ 0002085 unidirectional_gene_fusion
2065
+ 0002086 bidirectional_gene_fusion
2066
+ 0002087 pseudogenic_CDS
2067
+ 0002088 non_coding_transcript_splice_region_variant
2068
+ 0002089 3_prime_UTR_exon_variant
2069
+ 0002090 3_prime_UTR_intron_variant
2070
+ 0002091 5_prime_UTR_intron_variant
2071
+ 0002092 5_prime_UTR_exon_variant
2072
+ 0002093 structural_interaction_variant
2073
+ 0002094 non_allelic_homologous_recombination_region
2074
+ 0002095 scaRNA
2075
+ 0002096 short_tandem_repeat_variation
2076
+ 0002097 vertebrate_immune_system_pseudogene
2077
+ 0002098 immunoglobulin_pseudogene
2078
+ 0002099 T_cell_receptor_pseudogene
2079
+ 0002100 IG_C_pseudogene
2080
+ 0002101 IG_J_pseudogene
2081
+ 0002102 IG_V_pseudogene
2082
+ 0002103 TR_V_pseudogene
2083
+ 0002104 TR_J_pseudogene
2084
+ 0002105 translated_processed_pseudogene
2085
+ 0002106 translated_unprocessed_pseudogene
2086
+ 0002107 transcribed_unprocessed_pseudogene
2087
+ 0002108 transcribed_unitary_pseudogene
2088
+ 0002109 transcribed_processed_pseudogene
2089
+ 0002110 polymorphic_pseudogene_with_retained_intron
2090
+ 0002111 pseudogene_processed_transcript
2091
+ 0002112 coding_transcript_with_retained_intron
2092
+ 0002113 lncRNA_with_retained_intron
2093
+ 0002114 NMD_transcript
2094
+ 0002115 pseudogenic_transcript_with_retained_intron
2095
+ 0002116 polymorphic_pseudogene_processed_transcript
2096
+ 0002117 <new term>
2097
+ 0002118 NMD_polymorphic_pseudogene_transcript
2098
+ 0002119 allelic_frequency
2099
+ 0002120 three_prime_overlapping_ncrna
2100
+ 0002121 vertebrate_immune_system_gene
2101
+ 0002122 immunoglobulin_gene
2102
+ 0002123 IG_C_gene
2103
+ 0002124 IG_D_gene
2104
+ 0002125 IG_J_gene
2105
+ 0002126 IG_V_gene
2106
+ 0002127 lncRNA_gene
2107
+ 0002128 mt_rRNA
2108
+ 0002129 mt_tRNA
2109
+ 0002130 NSD_transcript
2110
+ 0002131 sense_intronic_lncRNA
2111
+ 0002132 sense_overlap_lncRNA
2112
+ 0002133 T_cell_receptor_gene
2113
+ 0002134 TR_C_Gene
2114
+ 0002135 TR_D_Gene
2115
+ 0002136 TR_J_Gene
2116
+ 0002137 TR_V_Gene
2117
+ 0002138 predicted_transcript
2118
+ 0002139 unconfirmed_transcript
2119
+ 0002140 early_origin_of_replication
2120
+ 0002141 late_origin_of_replication
2121
+ 0002142 histone_2A_acetylation_site
2122
+ 0002143 histone_2B_acetylation_site
2123
+ 0002144 histone_2AZ_acetylation_site
2124
+ 0002145 H2AZK4_acetylation_site
2125
+ 0002146 H2AZK7_acetylation_site
2126
+ 0002147 H2AZK11_acetylation_site
2127
+ 0002148 H2AZK13_acetylation_site
2128
+ 0002149 H2AZK15_acetylation_site
2129
+ 0002150 AUG_initiated_uORF
2130
+ 0002151 non_AUG_initiated_uORF
2131
+ 0002152 genic_downstream_transcript_variant
2132
+ 0002153 genic_upstream_transcript_variant
2133
+ 0002154 mitotic_recombination_region
2134
+ 0002155 meiotic_recombination_region
2135
+ 0002156 CArG_box
2136
+ 0002157 Mat2P
2137
+ 0002158 Mat3M
2138
+ 0002159 SHP_box
2139
+ 0002160 sequence_length_variant
2140
+ 0002161 short_tandem_repeat_change
2141
+ 0002162 short_tandem_repeat_expansion
2142
+ 0002163 short_tandem_repeat_contraction
2143
+ 0002164 H2BK5_acetylation_site
2144
+ 0002165 trinucleotide_repeat_expansion
2145
+ 0002166 ref_miRNA
2146
+ 0002167 isomiR
2147
+ 0002168 RNA_thermometer
2148
+ 0002169 splice_polypyrimidine_tract_variant
2149
+ 0002170 splice_donor_region_variant
2150
+ 0002171 telomeric_D_loop
2151
+ 0002172 sequence_alteration_artifact
2152
+ 0002173 indel_artifact
2153
+ 0002174 deletion_artifact
2154
+ 0002175 insertion_artifact
2155
+ 0002176 substitution_artifact
2156
+ 0002177 duplication_artifact
2157
+ 0002178 SNV_artifact
2158
+ 0002179 MNV_artifact
2159
+ 0002180 enzymatic_RNA_gene
2160
+ 0002181 ribozyme_gene
2161
+ 0002182 antisense_lncRNA_gene
2162
+ 0002183 sense_overlap_lncRNA_gene
2163
+ 0002184 sense_intronic_lncRNA_gene
2164
+ 0002185 bidirectional_promoter_lncRNA_gene
2165
+ 0002186 mutational_hotspot
2166
+ 0002187 HERV_insertion
2167
+ 0002188 functional_gene_region
2168
+ 0002189 allelic_pseudogene
2169
+ 0002190 enhancer_blocking_element
2170
+ 0002191 imprinting_control_region
2171
+ 0002192 flanking_repeat
2172
+ 0002193 processed_pseudogenic_rRNA
2173
+ 0002194 unprocessed_pseudogenic_rRNA
2174
+ 0002195 unitary_pseudogenic_rRNA
2175
+ 0002196 allelic_pseudogenic_rRNA
2176
+ 0002197 processed_pseudogenic_tRNA
2177
+ 0002198 unprocessed_pseudogenic_tRNA
2178
+ 0002199 unitary_pseudogenic_tRNA
2179
+ 0002200 allelic_pseudogenic_tRNA
2180
+ 0002201 terminal_repeat
2181
+ 0002202 repeat_instability_region
2182
+ 0002203 replication_start_site
2183
+ 0002204 nucleotide_cleavage_site
2184
+ 0002205 response_element
2185
+ 0002206 sequence_source
2186
+ 0002207 UNAAAC_motif
2187
+ 0002208 long_terminal_repeat_transcript
2188
+ 0002209 genomic_DNA_contig
2189
+ 0002210 presence_absence_variation
2190
+ 0002211 circular_plasmid
2191
+ 0002212 linear_plasmid
2192
+ 0002213 transcription_termination_signal
2193
+ 0002214 redundant_inserted_stop_gained
2194
+ 0002215 Zas1_recognition_motif
2195
+ 0002216 Pho7_binding_site
2196
+ 0002217 unspecified_indel
2197
+ 0002218 functionally_abnormal
2198
+ 0002219 functionally_normal
2199
+ 0002220 function_uncertain_variant
2200
+ 0002221 eukaryotic_promoter
2201
+ 0002222 prokaryotic_promoter
2202
+ 0002223 inert_DNA_spacer
2203
+ 0002224 2A_self_cleaving_peptide_region
2204
+ 0002225 LOZ1_response_element
2205
+ 0002226 group_IIC_intron
2206
+ 0002227 CDS_extension
2207
+ 0002228 CDS_five_prime_extension
2208
+ 0002229 CDS_three_prime_extension
2209
+ 0002230 CAAX_box
2210
+ 0002231 self_cleaving_ribozyme
2211
+ 0002232 selection_marker
2212
+ 0002233 homologous_chromosome_recognition_and_pairing_locus
2213
+ 0002234 pumilio_response_element
2214
+ 0002235 SUMO_interaction_motif
2215
+ 0002236 cytosolic_rRNA_18S_gene
2216
+ 0002237 cytosolic_rRNA_16S_gene
2217
+ 0002238 cytosolic_rRNA_5S_gene
2218
+ 0002239 cytosolic_rRNA_28S_gene
2219
+ 0002240 cytosolic_rRNA_5_8S_gene
2220
+ 0002241 rRNA_21S_gene
2221
+ 0002242 cytosolic_rRNA_25S_gene
2222
+ 0002243 cytosolic_rRNA_23S_gene
2223
+ 0002244 partially_duplicated_transcript
2224
+ 0002245 five_prime_duplicated_transcript
2225
+ 0002246 three_prime_duplicated_transcript
2226
+ 0002247 sncRNA
2227
+ 0002248 spurious_protein
2228
+ 0002249 mature_protein_region_of_CDS
2229
+ 0002250 propeptide_region_of_CDS
2230
+ 0002251 signal_peptide_region_of_CDS
2231
+ 0002252 transit_peptide_region_of_CDS
2232
+ 0002253 stem_loop_region
2233
+ 0002254 loop
2234
+ 0002255 stem
2235
+ 0002256 non_complimentary_stem
2236
+ 0002257 knob
2237
+ 0002258 teb1_recognition_motif
2238
+ 0002259 polyA_site_cluster
2239
+ 0002260 LARD
2240
+ 0002261 TRIM
2241
+ 0002262 Watson_strand
2242
+ 0002263 Crick_strand
2243
+ 0002264 Copia_LTR_retrotransposon
2244
+ 0002265 Gypsy_LTR_retrotransposon
2245
+ 0002266 Bel_Pao_LTR_retrotransposon
2246
+ 0002267 Retrovirus_LTR_retrotransposon
2247
+ 0002268 Endogenous_Retrovirus_LTR_retrotransposon
2248
+ 0002269 R2_LINE_retrotransposon
2249
+ 0002270 RTE_LINE_retrotransposon
2250
+ 0002271 Jockey_LINE_retrotransposon
2251
+ 0002272 L1_LINE_retrotransposon
2252
+ 0002273 I_LINE_retrotransposon
2253
+ 0002274 tRNA_SINE_retrotransposon
2254
+ 0002275 7SL_SINE_retrotransposon
2255
+ 0002276 5S_SINE_retrotransposon
2256
+ 0002277 Crypton_YR_transposon
2257
+ 0002278 Tc1_Mariner_TIR_transposon
2258
+ 0002279 hAT_TIR_transposon
2259
+ 0002280 Mutator_TIR_transposon
2260
+ 0002281 Merlin_TIR_transposon
2261
+ 0002282 Transib_TIR_transposon
2262
+ 0002283 piggyBac_TIR_transposon
2263
+ 0002284 PIF_Harbinger_TIR_transposon
2264
+ 0002285 CACTA_TIR_transposon
2265
+ 0002286 YR_retrotransposon
2266
+ 0002287 DIRS_YR_retrotransposon
2267
+ 0002288 Ngaro_YR_retrotransposon
2268
+ 0002289 Viper_YR_retrotransposon
2269
+ 0002290 Penelope_retrotransposon
2270
+ 0002291 circular_ncRNA
2271
+ 0002292 circular_mRNA
2272
+ 0002293 mitochondrial_control_region
2273
+ 0002294 mitochondrial_D_loop
2274
+ 0002295 transcription_factor_regulatory_site
2275
+ 0002296 TFRS_module
2276
+ 0002297 TFRS_collection
2277
+ 0002298 simple_operon
2278
+ 0002299 complex_operon
2279
+ 0002300 unit_of_gene_expression
2280
+ 0002301 transcription_unit
2281
+ 0002302 simple_regulon
2282
+ 0002303 complex_regulon
2283
+ 0002304 topologically_associated_domain
2284
+ 0002305 topologically_associated_domain_boundary
2285
+ 0002306 chromatin_regulatory_region
2286
+ 0002307 DNA_loop
2287
+ 0002308 DNA_loop_anchor
2288
+ 0002309 core_promoter_element
2289
+ 0002310 cryptic_promoter
2290
+ 0002311 viral_promoter
2291
+ 0002312 core_prokaryotic_promoter_element
2292
+ 0002313 core_viral_promoter_element
2293
+ 0002314 altered_gene_product_level
2294
+ 0002315 increased_gene_product_level
2295
+ 0002316 decreased_gene_product_level
2296
+ 0002317 absent_gene_product
2297
+ 0002318 altered_gene_product_sequence
2298
+ 0002319 NMD_triggering_variant
2299
+ 0002320 NMD_escaping_variant
2300
+ 0002321 stop_gained_NMD_triggering
2301
+ 0002322 stop_gained_NMD_escaping
2302
+ 0002323 frameshift_variant_NMD_triggering
2303
+ 0002324 frameshift_variant_NMD_escaping
2304
+ 0002325 splice_donor_variant_NMD_triggering
2305
+ 0002326 splice_donor_variant_NMD_escaping
2306
+ 0002327 splice_acceptor_variant_NMD_triggering
2307
+ 0002328 splice_acceptor_variant_NMD_escaping
2308
+ 0002329 minus_1_translational_frameshift
2309
+ 0002330 minus_2_translational_frameshift
2310
+ 0002331 accessible_DNA_region
2311
+ 0002332 epigenomically_modified_region
2312
+ 0002333 amber_stop_codon
2313
+ 0002334 ochre_stop_codon
2314
+ 0002335 opal_stop_codon
2315
+ 0002336 cytosolic_rRNA_2S_gene
2316
+ 0002337 cytosolic_2S_rRNA
2317
+ 0002338 U7_snRNA
2318
+ 0002339 scaRNA_gene
2319
+ 0002340 RNA_7SK
2320
+ 0002341 RNA_7SK_gene
2321
+ 0002342 sncRNA_gene
2322
+ 0002343 cytosolic_rRNA
2323
+ 0002344 mt_SSU_rRNA
2324
+ 0002345 mt_LSU_rRNA
2325
+ 0002346 plastid_rRNA
2326
+ 0002347 plastid_SSU_rRNA
2327
+ 0002348 plastid_LSU_rRNA
2328
+ 0002349 fragile_site
2329
+ 0002350 common_fragile_site
2330
+ 0002351 rare_fragile_site
2331
+ 0002352 sisRNA
2332
+ 0002353 sbRNA_gene
2333
+ 0002354 sbRNA
2334
+ 0002355 hpRNA_gene
2335
+ 0002356 hpRNA
2336
+ 0002357 biosynthetic_gene_cluster
2337
+ 0002358 vault_RNA_gene
2338
+ 0002359 Y_RNA_gene
2339
+ 0002360 cytosolic_rRNA_gene
2340
+ 0002361 cytosolic_LSU_rRNA_gene
2341
+ 0002362 cytosolic_SSU_rRNA_gene
2342
+ 0002363 mt_rRNA_gene
2343
+ 0002364 mt_LSU_rRNA_gene
2344
+ 0002365 mt_SSU_rRNA_gene
2345
+ 0002366 plastid_rRNA_gene
2346
+ 0002367 plastid_LSU_rRNA_gene
2347
+ 0002368 plastid_SSU_rRNA_gene
2348
+ 0002369 C_D_box_scaRNA
2349
+ 0002370 H_ACA_box_scaRNA
2350
+ 0002371 C-D_H_ACA_box_scaRNA
2351
+ 0002372 C_D_box_scaRNA_gene
2352
+ 0002373 H_ACA_box_scaRNA_gene
2353
+ 0002374 C-D_H_ACA_box_scaRNA_gene
2354
+ 0002375 C_D_box_snoRNA_gene
2355
+ 0002376 H_ACA_box_snoRNA_gene
2356
+ 0002377 U14_snoRNA_gene
2357
+ 0002378 U3_snoRNA_gene
2358
+ 0002379 methylation_guide_snoRNA_gene
2359
+ 0002380 pseudouridylation_guide_snoRNA_gene
2360
+ 0002381 bidirectional_promoter_lncRNA
2361
+ 0002382 range_extender_element
2362
+ 00000000002382 5_prime_UTR_uORF_variant
2363
+ 0002383 oncogenic_variant
2364
+ 0005836 regulatory_region
2365
+ 0005837 U14_snoRNA_primary_transcript
2366
+ 0005841 methylation_guide_snoRNA
2367
+ 0005843 rRNA_cleavage_RNA
2368
+ 0005845 exon_of_single_exon_gene
2369
+ 0005847 cassette_array_member
2370
+ 0005848 gene_cassette_member
2371
+ 0005849 gene_subarray_member
2372
+ 0005850 primer_binding_site
2373
+ 0005851 gene_array
2374
+ 0005852 gene_subarray
2375
+ 0005853 gene_cassette
2376
+ 0005854 gene_cassette_array
2377
+ 0005855 gene_group
2378
+ 0005856 selenocysteine_tRNA_primary_transcript
2379
+ 0005857 selenocysteinyl_tRNA
2380
+ 0005858 syntenic_region
2381
+ 0100001 biochemical_region_of_peptide
2382
+ 0100002 molecular_contact_region
2383
+ 0100003 intrinsically_unstructured_polypeptide_region
2384
+ 0100004 catmat_left_handed_three
2385
+ 0100005 catmat_left_handed_four
2386
+ 0100006 catmat_right_handed_three
2387
+ 0100007 catmat_right_handed_four
2388
+ 0100008 alpha_beta_motif
2389
+ 0100009 lipoprotein_signal_peptide
2390
+ 0100010 no_output
2391
+ 0100011 cleaved_peptide_region
2392
+ 0100012 peptide_coil
2393
+ 0100013 hydrophobic_region_of_peptide
2394
+ 0100014 n_terminal_region
2395
+ 0100015 c_terminal_region
2396
+ 0100016 central_hydrophobic_region_of_signal_peptide
2397
+ 0100017 polypeptide_conserved_motif
2398
+ 0100018 polypeptide_binding_motif
2399
+ 0100019 polypeptide_catalytic_motif
2400
+ 0100020 polypeptide_DNA_contact
2401
+ 0100021 polypeptide_conserved_region
2402
+ 1000002 substitution
2403
+ 1000005 complex_substitution
2404
+ 1000008 point_mutation
2405
+ 1000009 transition
2406
+ 1000010 pyrimidine_transition
2407
+ 1000011 C_to_T_transition
2408
+ 1000012 C_to_T_transition_at_pCpG_site
2409
+ 1000013 T_to_C_transition
2410
+ 1000014 purine_transition
2411
+ 1000015 A_to_G_transition
2412
+ 1000016 G_to_A_transition
2413
+ 1000017 transversion
2414
+ 1000018 pyrimidine_to_purine_transversion
2415
+ 1000019 C_to_A_transversion
2416
+ 1000020 C_to_G_transversion
2417
+ 1000021 T_to_A_transversion
2418
+ 1000022 T_to_G_transversion
2419
+ 1000023 purine_to_pyrimidine_transversion
2420
+ 1000024 A_to_C_transversion
2421
+ 1000025 A_to_T_transversion
2422
+ 1000026 G_to_C_transversion
2423
+ 1000027 G_to_T_transversion
2424
+ 1000028 intrachromosomal_mutation
2425
+ 1000029 chromosomal_deletion
2426
+ 1000030 chromosomal_inversion
2427
+ 1000031 interchromosomal_mutation
2428
+ 1000032 delins
2429
+ 1000035 duplication
2430
+ 1000036 inversion
2431
+ 1000037 chromosomal_duplication
2432
+ 1000038 intrachromosomal_duplication
2433
+ 1000039 direct_tandem_duplication
2434
+ 1000040 inverted_tandem_duplication
2435
+ 1000041 intrachromosomal_transposition
2436
+ 1000042 compound_chromosome
2437
+ 1000043 Robertsonian_fusion
2438
+ 1000044 chromosomal_translocation
2439
+ 1000045 ring_chromosome
2440
+ 1000046 pericentric_inversion
2441
+ 1000047 paracentric_inversion
2442
+ 1000048 reciprocal_chromosomal_translocation
2443
+ 1000049 sequence_variation_affecting_transcript
2444
+ 1000050 sequence_variant_causing_no_change_in_transcript
2445
+ 1000054 sequence_variation_affecting_coding_sequence
2446
+ 1000055 sequence_variant_causing_initiator_codon_change_in_transcript
2447
+ 1000056 sequence_variant_causing_amino_acid_coding_codon_change_in_transcript
2448
+ 1000057 sequence_variant_causing_synonymous_codon_change_in_transcript
2449
+ 1000058 sequence_variant_causing_non_synonymous_codon_change_in_transcript
2450
+ 1000059 sequence_variant_causing_missense_codon_change_in_transcript
2451
+ 1000060 sequence_variant_causing_conservative_missense_codon_change_in_transcript
2452
+ 1000061 sequence_variant_causing_nonconservative_missense_codon_change_in_transcript
2453
+ 1000062 sequence_variant_causing_nonsense_codon_change_in_transcript
2454
+ 1000063 sequence_variant_causing_terminator_codon_change_in_transcript
2455
+ 1000064 sequence_variation_affecting_reading_frame
2456
+ 1000065 frameshift_sequence_variation
2457
+ 1000066 sequence_variant_causing_plus_1_frameshift_mutation
2458
+ 1000067 sequence_variant_causing_minus_1_frameshift
2459
+ 1000068 sequence_variant_causing_plus_2_frameshift
2460
+ 1000069 sequence_variant_causing_minus_2_frameshift
2461
+ 1000070 sequence_variant_affecting_transcript_processing
2462
+ 1000071 sequence_variant_affecting_splicing
2463
+ 1000072 sequence_variant_affecting_splice_donor
2464
+ 1000073 sequence_variant_affecting_splice_acceptor
2465
+ 1000074 sequence_variant_causing_cryptic_splice_activation
2466
+ 1000075 sequence_variant_affecting_editing
2467
+ 1000076 sequence_variant_affecting_transcription
2468
+ 1000078 sequence_variant_decreasing_rate_of_transcription
2469
+ 1000079 sequence_variation_affecting_transcript_sequence
2470
+ 1000080 sequence_variant_increasing_rate_of_transcription
2471
+ 1000081 sequence_variant_affecting_rate_of_transcription
2472
+ 1000082 sequence variant_affecting_transcript_stability
2473
+ 1000083 sequence_variant_increasing_transcript_stability
2474
+ 1000084 sequence_variant_decreasing_transcript_stability
2475
+ 1000085 sequence_variation_affecting_level_of_transcript
2476
+ 1000086 sequence_variation_decreasing_level_of_transcript
2477
+ 1000087 sequence_variation_increasing_level_of_transcript
2478
+ 1000088 sequence_variant_affecting_translational_product
2479
+ 1000089 sequence_variant_causing_no_change_of_translational_product
2480
+ 1000092 sequence_variant_causing_complex_change_of_translational_product
2481
+ 1000093 sequence_variant_causing_amino_acid_substitution
2482
+ 1000094 sequence_variant_causing_conservative_amino_acid_substitution
2483
+ 1000095 sequence_variant_causing_nonconservative_amino_acid_substitution
2484
+ 1000096 sequence_variant_causing_amino_acid_insertion
2485
+ 1000097 sequence_variant_causing_amino_acid_deletion
2486
+ 1000098 sequence_variant_causing_polypeptide_truncation
2487
+ 1000099 sequence_variant_causing_polypeptide_elongation
2488
+ 1000100 mutation_causing_polypeptide_N_terminal_elongation
2489
+ 1000101 mutation_causing_polypeptide_C_terminal_elongation
2490
+ 1000102 sequence_variant_affecting_level_of_translational_product
2491
+ 1000103 sequence_variant_decreasing_level_of_translation_product
2492
+ 1000104 sequence_variant_increasing_level_of_translation_product
2493
+ 1000105 sequence_variant_affecting_polypeptide_amino_acid_sequence
2494
+ 1000106 mutation_causing_inframe_polypeptide_N_terminal_elongation
2495
+ 1000107 mutation_causing_out_of_frame_polypeptide_N_terminal_elongation
2496
+ 1000108 mutaton_causing_inframe_polypeptide_C_terminal_elongation
2497
+ 1000109 mutation_causing_out_of_frame_polypeptide_C_terminal_elongation
2498
+ 1000110 frame_restoring_sequence_variant
2499
+ 1000111 sequence_variant_affecting_3D_structure_of_polypeptide
2500
+ 1000112 sequence_variant_causing_no_3D_structural_change
2501
+ 1000115 sequence_variant_causing_complex_3D_structural_change
2502
+ 1000116 sequence_variant_causing_conformational_change
2503
+ 1000117 sequence_variant_affecting_polypeptide_function
2504
+ 1000118 sequence_variant_causing_loss_of_function_of_polypeptide
2505
+ 1000119 sequence_variant_causing_inactive_ligand_binding_site
2506
+ 1000120 sequence_variant_causing_inactive_catalytic_site
2507
+ 1000121 sequence_variant_causing_polypeptide_localization_change
2508
+ 1000122 sequence_variant_causing_polypeptide_post_translational_processing_change
2509
+ 1000123 polypeptide_post_translational_processing_affected
2510
+ 1000124 sequence_variant_causing_partial_loss_of_function_of_polypeptide
2511
+ 1000125 sequence_variant_causing_gain_of_function_of_polypeptide
2512
+ 1000126 sequence_variant_affecting_transcript_secondary_structure
2513
+ 1000127 sequence_variant_causing_compensatory_transcript_secondary_structure_mutation
2514
+ 1000132 sequence_variant_effect
2515
+ 1000134 sequence_variant_causing_polypeptide_fusion
2516
+ 1000136 autosynaptic_chromosome
2517
+ 1000138 homo_compound_chromosome
2518
+ 1000140 hetero_compound_chromosome
2519
+ 1000141 chromosome_fission
2520
+ 1000142 dextrosynaptic_chromosome
2521
+ 1000143 laevosynaptic_chromosome
2522
+ 1000144 free_duplication
2523
+ 1000145 free_ring_duplication
2524
+ 1000147 deficient_translocation
2525
+ 1000148 inversion_cum_translocation
2526
+ 1000149 bipartite_duplication
2527
+ 1000150 cyclic_translocation
2528
+ 1000151 bipartite_inversion
2529
+ 1000152 uninverted_insertional_duplication
2530
+ 1000153 inverted_insertional_duplication
2531
+ 1000154 insertional_duplication
2532
+ 1000155 interchromosomal_transposition
2533
+ 1000156 inverted_interchromosomal_transposition
2534
+ 1000157 uninverted_interchromosomal_transposition
2535
+ 1000158 inverted_intrachromosomal_transposition
2536
+ 1000159 uninverted_intrachromosomal_transposition
2537
+ 1000160 unoriented_insertional_duplication
2538
+ 1000161 unoriented_interchromosomal_transposition
2539
+ 1000162 unoriented_intrachromosomal_transposition
2540
+ 1000170 uncharacterized_chromosomal_mutation
2541
+ 1000171 deficient_inversion
2542
+ 1000173 tandem_duplication
2543
+ 1000175 partially_characterized_chromosomal_mutation
2544
+ 1000180 sequence_variant_affecting_gene_structure
2545
+ 1000181 sequence_variant_causing_gene_fusion
2546
+ 1000182 chromosome_number_variation
2547
+ 1000183 chromosome_structure_variation
2548
+ 1000184 sequence_variant_causes_exon_loss
2549
+ 1000185 sequence_variant_causes_intron_gain
2550
+ 1000186 sequence_variant_causing_cryptic_splice_donor_activation
2551
+ 1001186 sequence_variant_causing_cryptic_splice_acceptor_activation
2552
+ 1001187 alternatively_spliced_transcript
2553
+ 1001188 encodes_1_polypeptide
2554
+ 1001189 encodes_greater_than_1_polypeptide
2555
+ 1001190 encodes_different_polypeptides_different_stop
2556
+ 1001191 encodes_overlapping_peptides_different_start
2557
+ 1001192 encodes_disjoint_polypeptides
2558
+ 1001193 encodes_overlapping_polypeptides_different_start_and_stop
2559
+ 1001194 alternatively_spliced_gene_encoding_greater_than_1_polypeptide_coding_regions_overlapping
2560
+ 1001195 encodes_overlapping_peptides
2561
+ 1001196 cryptogene
2562
+ 1001197 dicistronic_primary_transcript
2563
+ 1001217 member_of_regulon
2564
+ 1001244 alternatively_spliced_transcript_encoding_greater_than_1_polypeptide_different_start_codon_different_stop_codon_coding_regions_non_overlapping
2565
+ 1001246 CDS_independently_known
2566
+ 1001247 orphan_CDS
2567
+ 1001249 CDS_supported_by_domain_match_data
2568
+ 1001251 CDS_supported_by_sequence_similarity_data
2569
+ 1001254 CDS_predicted
2570
+ 1001255 status_of_coding_sequence
2571
+ 1001259 CDS_supported_by_EST_or_cDNA_data
2572
+ 1001260 internal_Shine_Dalgarno_sequence
2573
+ 1001261 recoded_mRNA
2574
+ 1001262 minus_1_translationally_frameshifted
2575
+ 1001263 plus_1_translationally_frameshifted
2576
+ 1001264 mRNA_recoded_by_translational_bypass
2577
+ 1001265 mRNA_recoded_by_codon_redefinition
2578
+ 1001266 stop_codon_redefinition_as_selenocysteine
2579
+ 1001267 stop_codon_readthrough
2580
+ 1001268 recoding_stimulatory_region
2581
+ 1001269 four_bp_start_codon
2582
+ 1001270 stop_codon_redefinition_as_pyrrolysine
2583
+ 1001271 archaeal_intron
2584
+ 1001272 tRNA_intron
2585
+ 1001273 CTG_start_codon
2586
+ 1001274 SECIS_element
2587
+ 1001275 retron
2588
+ 1001277 three_prime_recoding_site
2589
+ 1001279 three_prime_stem_loop_structure
2590
+ 1001280 five_prime_recoding_site
2591
+ 1001281 flanking_three_prime_quadruplet_recoding_signal
2592
+ 1001282 UAG_stop_codon_signal
2593
+ 1001283 UAA_stop_codon_signal
2594
+ 1001284 regulon
2595
+ 1001285 UGA_stop_codon_signal
2596
+ 1001286 three_prime_repeat_recoding_signal
2597
+ 1001287 distant_three_prime_recoding_signal
2598
+ 1001288 stop_codon_signal
2599
+ 2000061 databank_entry
2600
+ 3000000 gene_segment
2601
+ 00000010002382 5_prime_UTR_uORF_stop_codon_variant
2602
+ 00000020002382 5_prime_UTR_uORF_frameshift_variant
2603
+ 00000030002382 5_prime_UTR_uORF_stop_codon_gain_variant
2604
+ 00000040002382 5_prime_UTR_uORF_stop_codon_loss_variant