pyobo 0.10.11__py3-none-any.whl → 0.10.12__py3-none-any.whl

pyobo/sources/ror.py

@@ -1,34 +1,40 @@
 """Convert the Research Organization Registry (ROR) into an ontology."""
 
+from __future__ import annotations
+
 import json
 import zipfile
-from typing import Iterable
+from typing import Any, Iterable
 
 import bioregistry
 import zenodo_client
 from tqdm.auto import tqdm
 
-from pyobo.struct import Obo, Reference, Term, TypeDef
+from pyobo.struct import Obo, Reference, Term
 from pyobo.struct.struct import acronym
+from pyobo.struct.typedef import (
+    has_homepage,
+    has_part,
+    has_predecessor,
+    has_successor,
+    located_in,
+    part_of,
+    see_also,
+)
 
 PREFIX = "ror"
 ROR_ZENODO_RECORD_ID = "10086202"
 
 # Constants
 ORG_CLASS = Reference(prefix="OBI", identifier="0000245")
-LOCATED_IN = Reference(prefix="RO", identifier="0001025")
-PART_OF = Reference(prefix="BFO", identifier="0000050")
-HAS_PART = Reference(prefix="BFO", identifier="0000051")
-SUCCESSOR = Reference(prefix="BFO", identifier="0000063")
-PREDECESSOR = Reference(prefix="BFO", identifier="0000062")
 
 RMAP = {
-    "Related": TypeDef.from_triple("rdfs", "seeAlso"),
-    "Child": TypeDef(HAS_PART),
-    "Parent": TypeDef(PART_OF),
-    "Predecessor": TypeDef(PREDECESSOR),
-    "Successor": TypeDef(SUCCESSOR),
-    "Located in": TypeDef(LOCATED_IN),
+    "Related": see_also,
+    "Child": has_part,
+    "Parent": part_of,
+    "Predecessor": has_predecessor,
+    "Successor": has_successor,
+    "Located in": located_in,
 }
 NAME_REMAPPING = {
     "'s-Hertogenbosch": "Den Bosch",  # SMH Netherlands, why u gotta be like this
@@ -43,16 +49,16 @@ class RORGetter(Obo):
     """An ontology representation of the ROR."""
 
     ontology = bioregistry_key = PREFIX
-    typedefs = list(RMAP.values())
+    typedefs = [has_homepage, *RMAP.values()]
     synonym_typedefs = [acronym]
     idspaces = {
         "ror": "https://ror.org/",
         "geonames": "https://www.geonames.org/",
-        "envo": "http://purl.obolibrary.org/obo/ENVO_",
-        "bfo": "http://purl.obolibrary.org/obo/BFO_",
-        "ro": "http://purl.obolibrary.org/obo/RO_",
-        "obi": "http://purl.obolibrary.org/obo/OBI_",
-        "omo": "http://purl.obolibrary.org/obo/OMO_",
+        "ENVO": "http://purl.obolibrary.org/obo/ENVO_",
+        "BFO": "http://purl.obolibrary.org/obo/BFO_",
+        "RO": "http://purl.obolibrary.org/obo/RO_",
+        "OBI": "http://purl.obolibrary.org/obo/OBI_",
+        "OMO": "http://purl.obolibrary.org/obo/OMO_",
         "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
     }
 
@@ -65,6 +71,18 @@ class RORGetter(Obo):
         return iterate_ror_terms(force=force)
 
 
+ROR_ORGANIZATION_TYPE_TO_OBI = {
+    "Education": ...,
+    "Facility": ...,
+    "Company": ...,
+    "Government": ...,
+    "Healthcare": ...,
+    "Other": ...,
+    "Archive": ...,
+}
+_MISSED_ORG_TYPES: set[str] = set()
+
+
 def iterate_ror_terms(*, force: bool = False) -> Iterable[Term]:
     """Iterate over terms in ROR."""
     version, source_uri, records = get_latest(force=force)
@@ -74,10 +92,23 @@ def iterate_ror_terms(*, force: bool = False) -> Iterable[Term]:
         name = record["name"]
         name = NAME_REMAPPING.get(name, name)
 
+        organization_types = record.get("types", [])
+        description = f"{organization_types[0]} in {record['country']['country_name']}"
+        if established := record["established"]:
+            description += f" established in {established}"
+
         term = Term(
-            reference=Reference(prefix=PREFIX, identifier=identifier, name=name), type="Instance"
+            reference=Reference(prefix=PREFIX, identifier=identifier, name=name),
+            type="Instance",
+            definition=description,
         )
         term.append_parent(ORG_CLASS)
+        # TODO replace term.append_parent(ORG_CLASS) with:
+        # for organization_type in organization_types:
+        #     term.append_parent(ORG_PARENTS[organization_type])
+
+        for link in record.get("links", []):
+            term.append_property(has_homepage, link)
 
         if name.startswith("The "):
             term.append_synonym(name.removeprefix("The "))
@@ -159,5 +190,20 @@ def get_latest(*, force: bool = False):
     raise FileNotFoundError
 
 
+def get_ror_to_country_geonames(**kwargs: Any) -> dict[str, str]:
+    """Get a mapping of ROR ids to GeoNames IDs for countries."""
+    from pyobo.sources.geonames import get_city_to_country
+
+    city_to_country = get_city_to_country()
+    rv = {}
+    for term in iterate_ror_terms(**kwargs):
+        city_geonames_reference = term.get_relationship(located_in)
+        if city_geonames_reference is None:
+            continue
+        if city_geonames_reference.identifier in city_to_country:
+            rv[term.identifier] = city_to_country[city_geonames_reference.identifier]
+    return rv
+
+
 if __name__ == "__main__":
-    RORGetter().write_default(write_obo=True, force=True)
+    RORGetter(force=True).write_default(write_obo=True, force=True)

pyobo/sources/uniprot/uniprot.py

@@ -6,10 +6,10 @@ from operator import attrgetter
 from pathlib import Path
 from typing import Iterable, List, Optional, cast
 
-import bioversions
 from tqdm.auto import tqdm
 
 from pyobo import Obo, Reference
+from pyobo.api.utils import get_version
 from pyobo.constants import RAW_MODULE
 from pyobo.identifier_utils import standardize_ec
 from pyobo.struct import Term, derives_from, enables, from_species, participates_in
@@ -166,7 +166,7 @@ def _parse_go(go_terms) -> List[Reference]:
 def ensure(version: Optional[str] = None, force: bool = False) -> Path:
     """Ensure the reviewed uniprot names are available."""
     if version is None:
-        version = bioversions.get_version("uniprot")
+        version = get_version("uniprot")
     return RAW_MODULE.ensure(
         PREFIX,
         version,

pyobo/struct/struct.py

@@ -56,6 +56,7 @@ from .typedef import (
     term_replaced_by,
 )
 from .utils import comma_separate, obo_escape_slim
+from ..api.utils import get_version
 from ..constants import (
     DATE_FORMAT,
     NCBITAXON_PREFIX,
@@ -77,6 +78,8 @@ __all__ = [
     "Term",
     "Obo",
     "make_ad_hoc_ontology",
+    "abbreviation",
+    "acronym",
 ]
 
 logger = logging.getLogger(__name__)
@@ -583,10 +586,8 @@ class Obo:
 
     def _get_version(self) -> Optional[str]:
         if self.bioversions_key:
-            import bioversions
-
             try:
-                return bioversions.get_version(self.bioversions_key)
+                return get_version(self.bioversions_key)
             except KeyError:
                 logger.warning(f"[{self.bioversions_key}] bioversions doesn't list this resource ")
             except IOError:

pyobo/struct/typedef.py

@@ -42,9 +42,13 @@ __all__ = [
     "has_participant",
     "exact_match",
     "has_dbxref",
+    "located_in",
+    "has_successor",
+    "has_predecessor",
     # Properties
     "has_inchi",
     "has_smiles",
+    "has_homepage",
 ]
 
 
@@ -323,6 +327,9 @@ enabled_by = TypeDef(reference=_enabled_by_reference, inverse=_enables_reference
 has_input = TypeDef.from_triple(prefix=RO_PREFIX, identifier="0002233", name="has input")
 has_output = TypeDef.from_triple(prefix=RO_PREFIX, identifier="0002234", name="has output")
 
+has_successor = TypeDef.from_triple(prefix="BFO", identifier="0000063", name="has successor")
+has_predecessor = TypeDef.from_triple(prefix="BFO", identifier="0000062", name="has predecessor")
+
 """ChEBI"""
 
 is_conjugate_base_of = TypeDef(
@@ -355,6 +362,9 @@ has_inchi = TypeDef(
     reference=Reference(prefix="debio", identifier="0000020", name="has InChI"),
 )
 
+has_homepage = TypeDef(
+    reference=Reference(prefix="foaf", identifier="homepage", name="homepage"), is_metadata_tag=True
+)
 
 default_typedefs: Dict[Tuple[str, str], TypeDef] = {
     v.pair: v for k, v in locals().items() if isinstance(v, TypeDef)

pyobo/utils/path.py

@@ -25,7 +25,7 @@ __all__ = [
 
 logger = logging.getLogger(__name__)
 
-VersionHint = Union[None, str, Callable[[], str]]
+VersionHint = Union[None, str, Callable[[], Optional[str]]]
 
 requests_ftp.monkeypatch_session()
 
@@ -46,6 +46,7 @@ def prefix_directory_join(
         logger.info("[%s] got version %s", prefix, version)
     elif not isinstance(version, str):
         raise TypeError(f"Invalid type: {version} ({type(version)})")
+    assert version is not None
     version = cleanup_version(version, prefix=prefix)
     if version is not None and "/" in version:
         raise ValueError(f"[{prefix}] Can not have slash in version: {version}")

pyobo/version.py

@@ -14,7 +14,7 @@ __all__ = [
     "get_git_hash",
 ]
 
-VERSION = "0.10.11"
+VERSION = "0.10.12"
 
 
 def get_git_hash() -> str:

pyobo/xrefdb/sources/__init__.py

@@ -7,7 +7,7 @@ from functools import lru_cache
 from typing import Callable, Iterable, Mapping, Optional
 
 import pandas as pd
-from pkg_resources import iter_entry_points
+from class_resolver import FunctionResolver
 from tqdm.auto import tqdm
 
 __all__ = [
@@ -19,10 +19,13 @@ __all__ = [
 
 logger = logging.getLogger(__name__)
 
+XrefGetter = Callable[[], pd.DataFrame]
+
 
 @lru_cache()
-def _get_xref_plugins() -> Mapping[str, Callable[[], pd.DataFrame]]:
-    return {entry.name: entry.load() for entry in iter_entry_points(group="pyobo.xrefs")}
+def _get_xref_plugins() -> Mapping[str, XrefGetter]:
+    resolver: FunctionResolver[XrefGetter] = FunctionResolver.from_entrypoint("pyobo.xrefs")
+    return resolver.lookup_dict
 
 
 def has_xref_plugin(prefix: str) -> bool:

pyobo/xrefdb/sources/chembl.py

@@ -4,9 +4,9 @@
 
 from typing import Optional
 
-import bioversions
 import pandas as pd
 
+from pyobo.api.utils import get_version
 from pyobo.constants import (
     PROVENANCE,
     SOURCE_ID,
@@ -26,7 +26,7 @@ def get_chembl_compound_equivalences_raw(
 ) -> pd.DataFrame:
     """Get the chemical representations raw dataframe."""
     if version is None:
-        version = bioversions.get_version("chembl")
+        version = get_version("chembl")
 
     base_url = f"ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_{version}"
     url = f"{base_url}/chembl_{version}_chemreps.txt.gz"
@@ -36,7 +36,7 @@ def get_chembl_compound_equivalences_raw(
 def get_chembl_compound_equivalences(version: Optional[str] = None) -> pd.DataFrame:
     """Get ChEMBL chemical equivalences."""
     if version is None:
-        version = bioversions.get_version("chembl")
+        version = get_version("chembl")
 
     df = get_chembl_compound_equivalences_raw(version=version)
     rows = []
@@ -55,7 +55,7 @@ def get_chembl_compound_equivalences(version: Optional[str] = None) -> pd.DataFr
 def get_chembl_protein_equivalences(version: Optional[str] = None) -> pd.DataFrame:
     """Get ChEMBL protein equivalences."""
     if version is None:
-        version = bioversions.get_version("chembl")
+        version = get_version("chembl")
 
     url = f"ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_{version}/chembl_uniprot_mapping.txt"
     df = ensure_df(
@@ -75,7 +75,7 @@ def get_chembl_protein_equivalences(version: Optional[str] = None) -> pd.DataFra
 def get_chembl_xrefs_df(version: Optional[str] = None) -> pd.DataFrame:
     """Get all ChEBML equivalences."""
     if version is None:
-        version = bioversions.get_version("chembl")
+        version = get_version("chembl")
 
     return pd.concat(
         [

pyobo/xrefdb/sources/pubchem.py

@@ -4,9 +4,9 @@
 
 from typing import Optional
 
-import bioversions
 import pandas as pd
 
+from ...api.utils import get_version
 from ...constants import XREF_COLUMNS
 from ...sources.pubchem import _get_pubchem_extras_url, get_pubchem_id_to_mesh_id
 
@@ -18,7 +18,8 @@ __all__ = [
 def get_pubchem_mesh_df(version: Optional[str] = None) -> pd.DataFrame:
     """Get PubChem Compound-MeSH xrefs."""
     if version is None:
-        version = bioversions.get_version("pubchem")
+        version = get_version("pubchem")
+        assert version is not None
     cid_mesh_url = _get_pubchem_extras_url(version, "CID-MeSH")
     return pd.DataFrame(
         [

pyobo/xrefdb/sources/wikidata.py

@@ -81,11 +81,18 @@ def iter_wikidata_mappings(
             json.dump(rows, file, indent=2)
 
     for row in rows:
-        wikidata_id = row["wikidata_id"]["value"][len("http://wikidata.org/entity/") :]
+        wikidata_id = _removeprefix(row["wikidata_id"]["value"], "http://www.wikidata.org/entity/")
+        wikidata_id = _removeprefix(wikidata_id, "http://wikidata.org/entity/")
         entity_id = row["id"]["value"]
         yield wikidata_id, entity_id
 
 
+def _removeprefix(s, prefix):
+    if s.startswith(prefix):
+        return s[len(prefix) :]
+    return s
+
+
 HEADERS = {
     "User-Agent": f"pyobo/{get_version()}",
 }

{pyobo-0.10.11.dist-info → pyobo-0.10.12.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pyobo
-Version: 0.10.11
+Version: 0.10.12
 Summary: Handling and writing OBO
 Home-page: https://github.com/pyobo/pyobo
 Download-URL: https://github.com/pyobo/pyobo/releases
@@ -19,16 +19,16 @@ Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3 :: Only
 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Classifier: Topic :: Scientific/Engineering :: Chemistry
-Requires-Python: >=3.8
+Requires-Python: >=3.9
 License-File: LICENSE
-Requires-Dist: obonet >=0.3.0
+Requires-Dist: obonet>=0.3.0
 Requires-Dist: click
 Requires-Dist: tqdm
 Requires-Dist: pyyaml
@@ -36,37 +36,37 @@ Requires-Dist: pandas
 Requires-Dist: requests
 Requires-Dist: protmapper
 Requires-Dist: more-itertools
-Requires-Dist: more-click >=0.0.2
+Requires-Dist: more-click>=0.0.2
 Requires-Dist: humanize
 Requires-Dist: tabulate
 Requires-Dist: cachier
-Requires-Dist: pystow >=0.2.7
-Requires-Dist: bioversions >=0.5.202
-Requires-Dist: bioregistry >=0.10.20
-Requires-Dist: bioontologies >=0.4.0
-Requires-Dist: zenodo-client >=0.0.5
+Requires-Dist: pystow>=0.2.7
+Requires-Dist: bioversions>=0.5.202
+Requires-Dist: bioregistry>=0.10.20
+Requires-Dist: bioontologies>=0.4.0
+Requires-Dist: zenodo-client>=0.0.5
 Requires-Dist: class-resolver
 Requires-Dist: psycopg2-binary
 Requires-Dist: drugbank-downloader
 Requires-Dist: chembl-downloader
-Requires-Dist: umls-downloader >=0.1.3
+Requires-Dist: umls-downloader>=0.1.3
 Requires-Dist: typing-extensions
 Provides-Extra: agrovoc
-Requires-Dist: rdflib ; extra == 'agrovoc'
+Requires-Dist: rdflib; extra == "agrovoc"
 Provides-Extra: docs
-Requires-Dist: sphinx ; extra == 'docs'
-Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
-Requires-Dist: sphinx-click ; extra == 'docs'
-Requires-Dist: sphinx-automodapi ; extra == 'docs'
+Requires-Dist: sphinx<8.0; extra == "docs"
+Requires-Dist: sphinx-rtd-theme; extra == "docs"
+Requires-Dist: sphinx-click; extra == "docs"
+Requires-Dist: sphinx-automodapi; extra == "docs"
 Provides-Extra: tests
-Requires-Dist: coverage ; extra == 'tests'
-Requires-Dist: pytest ; extra == 'tests'
+Requires-Dist: coverage; extra == "tests"
+Requires-Dist: pytest; extra == "tests"
 Provides-Extra: web
-Requires-Dist: flask ; extra == 'web'
-Requires-Dist: bootstrap-flask ; extra == 'web'
-Requires-Dist: flask-admin ; extra == 'web'
-Requires-Dist: flasgger ; extra == 'web'
-Requires-Dist: psutil ; extra == 'web'
+Requires-Dist: flask; extra == "web"
+Requires-Dist: bootstrap-flask; extra == "web"
+Requires-Dist: flask-admin; extra == "web"
+Requires-Dist: flasgger; extra == "web"
+Requires-Dist: psutil; extra == "web"
 
 PyOBO
 =====

{pyobo-0.10.11.dist-info → pyobo-0.10.12.dist-info}/RECORD

@@ -1,27 +1,27 @@
 pyobo/__init__.py,sha256=mZ96iZ-5ucxe2eLBi0xuSKaa2ZfeInaSR5Ajc_NkvUo,1862
 pyobo/__main__.py,sha256=cQjBabQ2wlFKcv54PFdt0SgPXNeb3oWneuOHaBgHx1Q,108
 pyobo/aws.py,sha256=oSy4qqHlCpuSyGhDeslrPtc_N0JDhRoGKWjw8RBmyNE,5976
-pyobo/constants.py,sha256=JULsofZ3GfSlpnPjJdvCxRfmt07E1niavoyM0bHOvlw,1937
+pyobo/constants.py,sha256=khE82G0qbKjyBSSSKnJSQFZDmn1Rhn06quKg9XbZzZ4,3047
 pyobo/getters.py,sha256=37e7pcTqU-uVjx_XctT9pJMn7zaazsNfcyWoe7KMHi0,15565
-pyobo/gilda_utils.py,sha256=9rzlOkmq2MFac2sJ7b-XHS6UTSTiOM_rRk_xzt-uJiI,7582
-pyobo/identifier_utils.py,sha256=y4eFbJJQGoGe0HKRqQoUc_3tani22W_K4z7OZFL6Z0E,3659
+pyobo/gilda_utils.py,sha256=cUv1WaZtzvu6Eb33ua4XShXXYcoD5StoEhNn3WcXN9c,8180
+pyobo/identifier_utils.py,sha256=Ivjai_uBk2Qodo1y6RTej4FjqT6lSGnZxgwRNnt-zPk,4484
 pyobo/mocks.py,sha256=R-4W3Rm5NarIHfNjxurbvBYsLHXt6jmDb6THMUt6K1w,2432
 pyobo/normalizer.py,sha256=OHME2CDQSZYSbqmP-L_-4nxete9W9mtAjUzXVs1hnjU,8293
 pyobo/obographs.py,sha256=JKE0a7e-gmxqdJoeX2zb_xQ6Tv5PAe60YhnIpAvrrYg,3758
 pyobo/plugins.py,sha256=dXWGoFuQktNeQUWSJlPz2a7FeLysggc9ry6auEZdw98,1227
-pyobo/reader.py,sha256=3VTWQMmA-AHi3RdA2jb48d2deXO-lYKqXbcMa9Qhi_4,21271
+pyobo/reader.py,sha256=sCC8RCUysmyVQRy8g_YJHLswr0BzQhxUJMMhe350l9A,21272
 pyobo/resource_utils.py,sha256=JBcJRihZhNwp78-qWZPrzSCGoYfyOjzBwMkfmOkO_no,4289
-pyobo/version.py,sha256=OKbCUY54AAMe_6iaT4e3cdZTp9yasFFcVcJUg7pWxIg,978
+pyobo/version.py,sha256=-M7dCNE1QohvaQ27gU5nWrB8AJHFKX5mla7gvx3HugI,978
 pyobo/api/__init__.py,sha256=Hq8p5uPW8fFYG2KfLqUsHhtLkTPqE4TqItGkedZzvXM,1326
 pyobo/api/alts.py,sha256=fa516S9uWVgMIXR5KbYu70KFpvfOD7Not2iEYFB8C_4,2844
 pyobo/api/hierarchy.py,sha256=o69jARrh9UXbzLsnXjW8Rs0kfQahvc22BlwcE7nAnFI,9527
 pyobo/api/metadata.py,sha256=py8Pv_Mmy31itziRaucWibGvWF6vOhF4Ofj1kFMk_vQ,1148
-pyobo/api/names.py,sha256=wXb677El7RRPVtpthrdKw-zUQJnbrBLgsgKGvPG6KVI,7789
+pyobo/api/names.py,sha256=qf_YjV631lyXezSyd3vW43kxP_Z1rSdU_VH3S2BZ8ZA,8405
 pyobo/api/properties.py,sha256=BKqUgN8nTpYrc0fROdaGGkptELgjbGT6TC_N2X8FIQM,7813
 pyobo/api/relations.py,sha256=oAjslceGPLPUDT4keOJQCFBt_BXOqhCgSYZ2d-IjO34,6217
 pyobo/api/species.py,sha256=RvTrC39yskueQyAplbcmqjHnL-t3QqggjBJcs5swgVU,2249
 pyobo/api/typedefs.py,sha256=Vb1wvWDWLZu-FchYFs03wMEzS3RUPUsLxvyPNlHBcYE,1157
-pyobo/api/utils.py,sha256=jxisiISIUtoW_SfNa3eOVTkEYP5ygYHaFTDibmMO7UE,1059
+pyobo/api/utils.py,sha256=cpYzdGiFmgWJB5PeelyIfFyDdUflmmAS2h_M65SGztc,1245
 pyobo/api/xrefs.py,sha256=oy5ZSoeEpcJfjDfSCBwUx3LJEykqbpBwNrMhfhiyYlY,6020
 pyobo/apps/__init__.py,sha256=iACi86TkTiGxwneGmfaudZOIEqZ45YjPXng7XjPE38Y,72
 pyobo/apps/cli.py,sha256=gnXBAaESw1T1BvgMpTv-0P26hM2vKCAXPy0SOskgUwU,335
@@ -42,7 +42,7 @@ pyobo/cli/__init__.py,sha256=ReL2NlPx_GEljszzkjIKKAK6BC3KAuHli9pFU1YmgXQ,96
 pyobo/cli/aws.py,sha256=ySuCV9JkOjelXLhcIgeHWReFSLh2n5zvGddNsfM1B8o,989
 pyobo/cli/cli.py,sha256=0Vibj_1LnkI8pfkK8U7r5eSRspR9VkH2OH4DwcHzA2M,3616
 pyobo/cli/database.py,sha256=5MCAbMClxYpPxZ83GilcsjjNs3zPjM7rHjqsBPfDGRM,10106
-pyobo/cli/lookup.py,sha256=AEGRg8cEqeXb7VENh9MfCFTNgb53Mz-k5uH-nW-mv9I,10126
+pyobo/cli/lookup.py,sha256=1tjSaEaMxntGNxoe4tm8Gs2dQjFDTAH3oyrC_1xIrco,10160
 pyobo/cli/utils.py,sha256=n8HVfJMEai0_4hDntbQPDZpqqZIPMNX_-kZ2cCyakss,1370
 pyobo/registries/__init__.py,sha256=P4UmjPFFYkQ_YrXcM5NMT9VF45pHLBqavcmZ7jPwpNQ,417
 pyobo/registries/metaregistry.json,sha256=ssjWlc3fqQBw0V4wwVZBeW-4Y_B_RkIEc0ooOFeiKJQ,12865
@@ -52,10 +52,10 @@ pyobo/resources/ncbitaxon.py,sha256=kyJDMGm8qIpIpckN6NSGovCBDacG1qGYTIpvJ--HXhM,
 pyobo/resources/ncbitaxon.tsv.gz,sha256=43zHjnVt62TA4_lV58X-FCPdMDfLg1B1PvZSr_Xy9hY,22981954
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 pyobo/resources/ro.tsv,sha256=YvlBLPAKy2w4IheYzO9ox1Yg6WkHdMVzMQTikIlECog,26586
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 pyobo/sources/agrovoc.py,sha256=J425AyyOVAeqeyN5MhmAR9OtJom41GDvKArfyz1iIU8,795
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 pyobo/sources/chebi.py,sha256=7t5CaykOWXMQ9JRW8x1g_gsZhygCdjR2MGRYTFLEiTs,1230
@@ -64,6 +64,7 @@ pyobo/sources/civic_gene.py,sha256=SUwlb1PXwVVB-XQanyI7tRbPMGaDNiB-CXNry_idAZY,1
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 pyobo/sources/conso.py,sha256=ZLQ_T5EgrcuX9q6kCBKCwfGzAEVxgN6xADl-LKzJtbk,2460
 pyobo/sources/cpt.py,sha256=x8P15D9UX5Fwf6bmeVsU1DAFJvZ22rxVPy5ur-GUk_Q,1482
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 pyobo/sources/cvx.py,sha256=FZAghQxkefWsxT1nTTUb56NgteRbAmawpOo3IdAfPAQ,2836
 pyobo/sources/depmap.py,sha256=VuZduDgCduiAHPLwPDXgWpxhMSOZCC4UsxFdj7hNkYQ,3656
 pyobo/sources/dictybase_gene.py,sha256=EgWBwUZ83ev7x5Lp_nUkgSq2zumkDjJ7_13m3f6kJz0,2564
@@ -73,38 +74,38 @@ pyobo/sources/drugcentral.py,sha256=05mGolBIyKCxAYzpH9LY_ZQrTVnizup2JUiWi2wW9OI,
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 pyobo/sources/umls/synonym_types.tsv,sha256=z--ngeAqA_Kk8ft2YD8qOU_XUxhnTxF0OhL8jRd5xqo,8551
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 pyobo/sources/uniprot/uniprot_ptm.py,sha256=ze1cf0_kkqslhS-lXa7EdfasV4reUDp6niJat6yymT8,3551
 pyobo/ssg/__init__.py,sha256=Q5vYmk1LZwriShmA3TcYZ1Z1yiyjTWItcGxep5Fi2pw,5390
 pyobo/ssg/base.html,sha256=_vldUCa-gL2YTNY6GgAuxNT3TgaED585vF_q7TrrjYs,2844
@@ -135,8 +136,8 @@ pyobo/ssg/term.html,sha256=QU6piGOq4dq8zlNhJvLFxqFjhVQyWlkiG31I0Sg5frg,3559
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{pyobo-0.10.11.dist-info → pyobo-0.10.12.dist-info}/WHEEL

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