pymoo 0.6.1.5.dev0__cp310-cp310-macosx_11_0_arm64.whl

pymoo/visualization/video/one_var_one_obj.py

@@ -0,0 +1,57 @@
+import matplotlib.pyplot as plt
+import numpy as np
+
+from pymoo.visualization.video.callback_video import AnimationCallback
+
+
+class OneVariableOneObjectiveVisualization(AnimationCallback):
+
+    def __init__(self,
+                 n_samples_for_surface=10000,
+                 **kwargs):
+        super().__init__(**kwargs)
+        self.last_pop = None
+        self.n_samples_for_surface = n_samples_for_surface
+
+    def do(self, problem, algorithm):
+
+        # check whether the visualization can be done or not - throw exception or simply do nothing
+        if problem.n_var != 1 or problem.n_obj != 1:
+            raise Exception("This visualization can only be used for problems with one variable and one objective!")
+
+        # draw the problem surface
+        xl, xu = problem.bounds()
+        _X = np.linspace(xl, xu, self.n_samples_for_surface)
+        _F = problem.evaluate(_X)
+        plt.plot(_X, _F, label="True", color="black", alpha=0.6)
+        plt.ylim(xl[0], xu[0])
+        plt.ylim(_F.min(), _F.max())
+
+        pop = algorithm.pop
+
+        X, F, CV = pop.get("X", "F", "CV")
+        plt.scatter(X[:, 0], F[:, 0], color="blue", marker="o", s=70)
+
+        is_new = np.full(len(pop), True)
+        if self.last_pop is not None:
+            for k, ind in enumerate(pop):
+                if ind in self.last_pop:
+                    is_new[k] = False
+
+        # plot the new population
+        if is_new.sum() > 0:
+            X, F, CV = pop[is_new].get("X", "F", "CV")
+            plt.scatter(X[:, 0], F[:, 0], color="red", marker="*", s=70)
+
+        if hasattr(algorithm, "off") and algorithm.off is not None:
+            X, F, CV = algorithm.off.get("X", "F", "CV")
+            plt.scatter(X[:, 0], F[:, 0], color="purple", marker="*", s=40)
+
+        plt.title(f"Generation: {algorithm.n_gen}")
+        plt.legend()
+
+        # store the current population as the last
+        self.last_pop = set(pop)
+
+
+

pymoo/visualization/video/two_var_one_obj.py

@@ -0,0 +1,62 @@
+import matplotlib.pyplot as plt
+import numpy as np
+
+from pymoo.visualization.fitness_landscape import FitnessLandscape
+from pymoo.visualization.video.callback_video import AnimationCallback
+
+
+class TwoVariablesOneObjectiveVisualization(AnimationCallback):
+
+    def __init__(self,
+                 n_samples_for_surface=10000,
+                 **kwargs):
+        super().__init__(**kwargs)
+        self.last_pop = None
+        self.n_samples_for_surface = n_samples_for_surface
+
+    def do(self, problem, algorithm):
+
+        # check whether the visualization can be done or not - throw exception or simply do nothing
+        if problem.n_var != 2 or problem.n_obj != 1:
+            raise Exception("This visualization can only be used for problems with two variables and one objective!")
+
+        # draw the problem surface
+        # if algorithm.surrogate.targets["F"].doe is not None:
+        #     problem = algorithm.surrogate
+        plot = FitnessLandscape(problem, _type="contour", kwargs_contour=dict(alpha=0.5))
+        plot.do()
+
+        # get the population
+        pop = algorithm.pop
+
+        X, F, CV = pop.get("X", "F", "CV")
+        plt.scatter(X[:, 0], X[:, 1], facecolor="none", edgecolors="black", marker="o", s=50, label="Solutions")
+
+        if hasattr(algorithm, "off") and algorithm.off is not None:
+            X, F, CV = algorithm.off.get("X", "F", "CV")
+            plt.scatter(X[:, 0], X[:, 1], color="green", marker="D", s=30, label="Offsprings")
+
+        is_new = np.full(len(pop), True)
+        if self.last_pop is not None:
+            for k, ind in enumerate(pop):
+                if ind in self.last_pop:
+                    is_new[k] = False
+
+        # plot the new population
+        if is_new.sum() > 0:
+            X, F, CV = pop[is_new].get("X", "F", "CV")
+            plt.scatter(X[:, 0], X[:, 1], color="red", marker="*", s=70, label="Survivors")
+
+        xl, xu = problem.bounds()
+        plt.xlim(xl[0], xu[0])
+        plt.ylim(xl[1], xu[1])
+
+        plt.title(f"Generation: {algorithm.n_gen}")
+        plt.legend()
+
+        # store the current population as the last
+        self.last_pop = set(pop)
+
+        plt.show()
+
+        return plt.gcf()

pymoo-0.6.1.5.dev0.dist-info/METADATA

@@ -0,0 +1,187 @@
+Metadata-Version: 2.4
+Name: pymoo
+Version: 0.6.1.5.dev0
+Summary: Multi-Objective Optimization in Python
+Author-email: Julian Blank <blankjul@outlook.com>
+License-Expression: Apache-2.0
+Project-URL: homepage, https://pymoo.org
+Keywords: optimization
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+Requires-Dist: numpy>=1.19.3
+Requires-Dist: scipy>=1.1
+Requires-Dist: matplotlib>=3
+Requires-Dist: autograd>=1.4
+Requires-Dist: cma>=3.2.2
+Requires-Dist: alive-progress
+Requires-Dist: dill
+Requires-Dist: Deprecated
+Dynamic: license-file
+
+
+
+.. |python| image:: https://img.shields.io/badge/python-3.10-blue.svg
+   :alt: python 3.10
+
+.. |license| image:: https://img.shields.io/badge/license-apache-orange.svg
+   :alt: license apache
+   :target: https://www.apache.org/licenses/LICENSE-2.0
+
+
+.. |logo| image:: https://github.com/anyoptimization/pymoo-data/blob/main/logo.png?raw=true
+  :target: https://pymoo.org
+  :alt: pymoo
+
+
+.. |animation| image:: https://github.com/anyoptimization/pymoo-data/blob/main/animation.gif?raw=true
+  :target: https://pymoo.org
+  :alt: pymoo
+
+
+.. _Github: https://github.com/anyoptimization/pymoo
+.. _Documentation: https://www.pymoo.org/
+.. _Paper: https://ieeexplore.ieee.org/document/9078759
+
+
+
+
+|python| |license|
+
+
+|logo|
+
+
+
+Documentation_ / Paper_ / Installation_ / Usage_ / Citation_ / Contact_
+
+
+
+pymoo: Multi-objective Optimization in Python
+====================================================================
+
+Our open-source framework pymoo offers state of the art single- and multi-objective algorithms and many more features
+related to multi-objective optimization such as visualization and decision making.
+
+
+.. _Installation:
+
+Installation
+********************************************************************************
+
+First, make sure you have a Python 3 environment installed. We recommend miniconda3 or anaconda3.
+
+The official release is always available at PyPi:
+
+.. code:: bash
+
+    pip install -U pymoo
+
+
+For the current developer version:
+
+.. code:: bash
+
+    git clone https://github.com/anyoptimization/pymoo
+    cd pymoo
+    pip install .
+
+
+Since for speedup, some of the modules are also available compiled, you can double-check
+if the compilation worked. When executing the command, be sure not already being in the local pymoo
+directory because otherwise not the in site-packages installed version will be used.
+
+.. code:: bash
+
+    python -c "from pymoo.util.function_loader import is_compiled;print('Compiled Extensions: ', is_compiled())"
+
+
+.. _Usage:
+
+Usage
+********************************************************************************
+
+We refer here to our documentation for all the details.
+However, for instance, executing NSGA2:
+
+.. code:: python
+
+
+    from pymoo.algorithms.moo.nsga2 import NSGA2
+    from pymoo.problems import get_problem
+    from pymoo.optimize import minimize
+    from pymoo.visualization.scatter import Scatter
+
+    problem = get_problem("zdt1")
+
+    algorithm = NSGA2(pop_size=100)
+
+    res = minimize(problem,
+                   algorithm,
+                   ('n_gen', 200),
+                   seed=1,
+                   verbose=True)
+
+    plot = Scatter()
+    plot.add(problem.pareto_front(), plot_type="line", color="black", alpha=0.7)
+    plot.add(res.F, color="red")
+    plot.show()
+
+
+
+A representative run of NSGA2 looks as follows:
+
+|animation|
+
+
+
+.. _Citation:
+
+Citation
+********************************************************************************
+
+If you have used our framework for research purposes, you can cite our publication by:
+
+| `J. Blank and K. Deb, pymoo: Multi-Objective Optimization in Python, in IEEE Access, vol. 8, pp. 89497-89509, 2020, doi: 10.1109/ACCESS.2020.2990567 <https://ieeexplore.ieee.org/document/9078759>`_
+|
+| BibTex:
+
+::
+
+    @ARTICLE{pymoo,
+        author={J. {Blank} and K. {Deb}},
+        journal={IEEE Access},
+        title={pymoo: Multi-Objective Optimization in Python},
+        year={2020},
+        volume={8},
+        number={},
+        pages={89497-89509},
+    }
+
+.. _Contact:
+
+Contact
+********************************************************************************
+
+Feel free to contact me if you have any questions:
+
+| `Julian Blank <http://julianblank.com>`_  (blankjul [at] msu.edu)
+| Michigan State University
+| Computational Optimization and Innovation Laboratory (COIN)
+| East Lansing, MI 48824, USA
+
+
+

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