pymolfit 0.1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pymolfit/__init__.py +241 -0
- pymolfit/_version.py +1 -0
- pymolfit/aer_data.py +928 -0
- pymolfit/atmosphere.py +1987 -0
- pymolfit/cli.py +750 -0
- pymolfit/components.py +1915 -0
- pymolfit/continuum.py +1664 -0
- pymolfit/data/lblrtm_v12_11_co2_continuum.npz +0 -0
- pymolfit/data/lblrtm_v12_11_h2o_continuum.npz +0 -0
- pymolfit/data/lblrtm_v12_11_n2_fundamental.npz +0 -0
- pymolfit/data/lblrtm_v12_11_o2_continuum.npz +0 -0
- pymolfit/data/lblrtm_v12_11_tips.npz +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s1.fits +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s2.fits +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s3.fits +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s4.fits +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s5.fits +0 -0
- pymolfit/data/profiles/gdas/GDAS_t0_s6.fits +0 -0
- pymolfit/data/profiles/mipas/equ.fits +57 -0
- pymolfit/data/profiles/mipas/std.fits +2 -1
- pymolfit/data/profiles/mipas/tro.fits +8 -0
- pymolfit/diagnostics.py +66 -0
- pymolfit/fit.py +2396 -0
- pymolfit/gdas.py +297 -0
- pymolfit/hitran.py +629 -0
- pymolfit/io.py +294 -0
- pymolfit/line_data.py +561 -0
- pymolfit/linelist.py +575 -0
- pymolfit/model.py +1141 -0
- pymolfit/partition.py +457 -0
- pymolfit/physics.py +1499 -0
- pymolfit/plotting.py +44 -0
- pymolfit/provenance.py +163 -0
- pymolfit/radiative_transfer.py +250 -0
- pymolfit/spectrum.py +249 -0
- pymolfit/systematics.py +413 -0
- pymolfit/validation.py +490 -0
- pymolfit/workflow.py +1391 -0
- pymolfit-0.1.0.dist-info/METADATA +753 -0
- pymolfit-0.1.0.dist-info/RECORD +44 -0
- pymolfit-0.1.0.dist-info/WHEEL +5 -0
- pymolfit-0.1.0.dist-info/entry_points.txt +2 -0
- pymolfit-0.1.0.dist-info/licenses/THIRD_PARTY_NOTICES.md +40 -0
- pymolfit-0.1.0.dist-info/top_level.txt +1 -0
pymolfit/__init__.py
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"""Pure-Python telluric fitting experiments inspired by ESO Molecfit."""
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from ._version import __version__
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from .aer_data import (
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AER_CATALOG_VERSION,
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AERCatalogArtifact,
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AERDataError,
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AERLineArtifact,
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aer_catalog_status,
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default_aer_cache_dir,
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find_local_aer_catalog,
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install_aer_catalog,
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load_aer_line_window,
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)
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from .atmosphere import AtmosphereLayer, AtmosphereProfile
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from .components import (
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AbsorptionComponent,
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CO2ContinuumAbsorption,
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H2OContinuumAbsorption,
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HitranLineAbsorption,
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N2CIAAbsorption,
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N2ContinuumAbsorption,
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N2RototranslationalContinuumAbsorption,
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O2CIAAbsorption,
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O2ContinuumAbsorption,
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PairCIAAbsorption,
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RayleighScatteringAbsorption,
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TabulatedContinuumAbsorption,
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combine_optical_depth_components,
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line_wing_effective_cutoff_cm,
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)
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from .continuum import (
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CIABlock,
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HitranCIATable,
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LBLRTMCO2Continuum,
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LBLRTMH2OContinuum,
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LBLRTMN2FundamentalContinuum,
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LBLRTMN2OvertoneContinuum,
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LBLRTMO2Continuum,
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MTCKDH2OContinuum,
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TabulatedContinuum,
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cubic_interpolate_regular,
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lblrtm_n2_rototranslational_coefficients,
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lblrtm_n2_rototranslational_optical_depth,
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lblrtm_rayleigh_optical_depth,
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radiation_term_cm,
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radiation_term_interval_cm,
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)
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from .diagnostics import correction_summary, residual_by_window
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from .fit import (
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FitConfig,
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MultiTelluricFitResult,
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TelluricFitResult,
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fit_telluric_segments,
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fit_tellurics,
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)
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from .hitran import (
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LBLRTM_ISOTOPOLOGUE_MASSES_AMU,
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lblrtm_isotopologue_mass_amu,
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read_aer_line_file,
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read_hitran_par,
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)
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from .io import load_spectrum, save_spectrum
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from .linelist import LineList
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from .line_data import (
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HitranAcquisitionError,
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HitranLineArtifact,
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cache_hitran_par,
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default_hitran_cache_dir,
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fetch_hitran_lines,
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)
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from .model import (
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ModelConfig,
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PiecewiseConstantRebinPlan,
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SampleAverageRebinPlan,
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average_high_resolution_values,
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high_resolution_wavelength_grid,
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lsf_kernel_half_width_pixels,
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optical_depth_basis,
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prepare_piecewise_constant_rebin,
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prepare_sample_average_rebin,
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radiative_transfer_wavelength_grid,
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rebin_piecewise_constant_values,
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rebin_high_resolution_values,
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sample_high_resolution_values,
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transmission_from_high_resolution_basis,
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transmission_model,
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)
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from .partition import IsotopologueMetadata, PartitionTable
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from .plotting import plot_fit
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from .physics import (
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lblrtm_dynamic_line_cutoff_cm,
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lblrtm_dynamic_max_line_cutoff_cm,
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lblrtm_f4_coefficients,
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lblrtm_layer_wavenumber_spacing_cm,
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lblrtm_layer_wavenumber_spacings_cm,
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lblrtm_merge_layer_wavenumber_spacings_cm,
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lblrtm_panel_interpolate_r1_r2_r3,
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lblrtm_panel_voigt_profile_wavenumber,
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lblrtm_tabulated_voigt_profile_offset,
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lblrtm_temperature_scaling_lower_energy,
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lblrtm_voigt_hwhm,
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pressure_shift_wavenumber,
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)
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from .radiative_transfer import (
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PhysicalModelConfig,
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hitran_optical_depth_basis,
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physical_components_from_options,
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physical_optical_depth_basis,
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physical_transmission_model,
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)
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from .spectrum import Spectrum, air_to_vacuum_wavelength, correct_spectrum, vacuum_to_air_wavelength
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from .systematics import (
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ModelSystematicsResult,
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MultiModelSystematicsResult,
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fit_telluric_segments_with_systematics,
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fit_tellurics_with_systematics,
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)
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from .validation import (
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ScienceReadinessReport,
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SpectrumComparison,
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TelluricCrossValidationResult,
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ValidationCheck,
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compare_spectra,
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cross_validate_telluric_segments,
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)
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from .workflow import correct_arrays, correct_file
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__all__ = [
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"__version__",
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"AER_CATALOG_VERSION",
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"AERCatalogArtifact",
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"AERDataError",
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"AERLineArtifact",
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"aer_catalog_status",
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"default_aer_cache_dir",
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"find_local_aer_catalog",
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"install_aer_catalog",
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"load_aer_line_window",
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"AbsorptionComponent",
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"AtmosphereLayer",
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"AtmosphereProfile",
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"CIABlock",
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"CO2ContinuumAbsorption",
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"FitConfig",
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"H2OContinuumAbsorption",
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"HitranCIATable",
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"HitranLineAbsorption",
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"HitranAcquisitionError",
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"HitranLineArtifact",
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"IsotopologueMetadata",
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"LineList",
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"LBLRTM_ISOTOPOLOGUE_MASSES_AMU",
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"LBLRTMCO2Continuum",
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"LBLRTMH2OContinuum",
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"LBLRTMN2FundamentalContinuum",
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"LBLRTMN2OvertoneContinuum",
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"LBLRTMO2Continuum",
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"ModelConfig",
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"ModelSystematicsResult",
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"MultiModelSystematicsResult",
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"MTCKDH2OContinuum",
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"MultiTelluricFitResult",
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"N2CIAAbsorption",
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"N2ContinuumAbsorption",
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"N2RototranslationalContinuumAbsorption",
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"O2CIAAbsorption",
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"O2ContinuumAbsorption",
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"PairCIAAbsorption",
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"PhysicalModelConfig",
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"PartitionTable",
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"PiecewiseConstantRebinPlan",
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"SampleAverageRebinPlan",
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"RayleighScatteringAbsorption",
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"Spectrum",
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"SpectrumComparison",
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"TelluricCrossValidationResult",
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"ScienceReadinessReport",
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"TabulatedContinuum",
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"TabulatedContinuumAbsorption",
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"TelluricFitResult",
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"ValidationCheck",
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"air_to_vacuum_wavelength",
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"correct_spectrum",
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"correct_arrays",
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"correct_file",
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"cache_hitran_par",
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"combine_optical_depth_components",
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"compare_spectra",
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"cross_validate_telluric_segments",
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"correction_summary",
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"cubic_interpolate_regular",
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"fit_tellurics",
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"fit_tellurics_with_systematics",
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"fetch_hitran_lines",
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"fit_telluric_segments",
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"fit_telluric_segments_with_systematics",
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"high_resolution_wavelength_grid",
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"lsf_kernel_half_width_pixels",
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"hitran_optical_depth_basis",
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"lblrtm_dynamic_line_cutoff_cm",
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"lblrtm_dynamic_max_line_cutoff_cm",
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"lblrtm_f4_coefficients",
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"lblrtm_isotopologue_mass_amu",
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"lblrtm_layer_wavenumber_spacing_cm",
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"lblrtm_layer_wavenumber_spacings_cm",
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"lblrtm_merge_layer_wavenumber_spacings_cm",
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"lblrtm_n2_rototranslational_coefficients",
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"lblrtm_n2_rototranslational_optical_depth",
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"lblrtm_panel_interpolate_r1_r2_r3",
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"lblrtm_panel_voigt_profile_wavenumber",
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"lblrtm_rayleigh_optical_depth",
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"lblrtm_tabulated_voigt_profile_offset",
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"lblrtm_temperature_scaling_lower_energy",
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"lblrtm_voigt_hwhm",
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"line_wing_effective_cutoff_cm",
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"default_hitran_cache_dir",
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"load_spectrum",
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"optical_depth_basis",
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"physical_components_from_options",
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"physical_optical_depth_basis",
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"physical_transmission_model",
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"plot_fit",
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"pressure_shift_wavenumber",
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"prepare_piecewise_constant_rebin",
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"prepare_sample_average_rebin",
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"radiative_transfer_wavelength_grid",
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"radiation_term_cm",
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"radiation_term_interval_cm",
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"rebin_piecewise_constant_values",
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"read_aer_line_file",
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"read_hitran_par",
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"average_high_resolution_values",
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"rebin_high_resolution_values",
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"residual_by_window",
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"save_spectrum",
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"sample_high_resolution_values",
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"transmission_from_high_resolution_basis",
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"transmission_model",
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"vacuum_to_air_wavelength",
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]
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pymolfit/_version.py
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__version__ = "0.1.0"
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