pymodaq 4.2.4__py3-none-any.whl → 5.0.0__py3-none-any.whl

pymodaq/utils/plotting/data_viewers/viewer2D.py

@@ -1,1118 +0,0 @@
-from collections import OrderedDict
-import copy
-import datetime
-import numpy as np
-import sys
-from typing import Union, Iterable, List, Dict
-
-import pymodaq.utils.messenger
-from qtpy import QtCore, QtGui, QtWidgets
-from qtpy.QtCore import QObject, Slot, Signal, Qt
-import pyqtgraph as pg
-from pyqtgraph.graphicsItems.GradientEditorItem import Gradients
-from pyqtgraph import ROI as pgROI
-
-from pymodaq.utils.data import (Axis, DataToExport, DataFromRoi, DataFromPlugins, DataRaw,
-                                DataDistribution, DataWithAxes)
-from pymodaq.utils.logger import set_logger, get_module_name
-from pymodaq.utils.managers.roi_manager import ROIManager, SimpleRectROI
-from pymodaq.utils.managers.action_manager import ActionManager
-from pymodaq.utils.plotting.widgets import ImageWidget
-
-from pymodaq.utils.plotting.data_viewers.viewer import ViewerBase
-from pymodaq.utils.plotting.data_viewers.viewer1D import Viewer1D
-from pymodaq.utils.plotting.data_viewers.viewer0D import Viewer0D
-from pymodaq.utils.plotting.items.image import UniformImageItem, SpreadImageItem
-from pymodaq.utils.plotting.items.axis_scaled import AXIS_POSITIONS, AxisItem_Scaled
-from pymodaq.utils.plotting.items.crosshair import Crosshair
-from pymodaq.utils.plotting.utils.filter import Filter2DFromCrosshair, Filter2DFromRois
-import pymodaq.utils.daq_utils as utils
-from pymodaq.utils.plotting.utils.plot_utils import make_dashed_pens, RoiInfo
-
-
-logger = set_logger(get_module_name(__file__))
-
-Gradients.update(OrderedDict([
-    ('red', {'ticks': [(0.0, (0, 0, 0, 255)), (1.0, (255, 0, 0, 255))], 'mode': 'rgb'}),
-    ('green', {'ticks': [(0.0, (0, 0, 0, 255)), (1.0, (0, 255, 0, 255))], 'mode': 'rgb'}),
-    ('blue', {'ticks': [(0.0, (0, 0, 0, 255)), (1.0, (0, 0, 255, 255))], 'mode': 'rgb'}),
-    ('spread', {'ticks': [(0.0, (0, 0, 0, 255)), (1.0, (255, 255, 255, 255))], 'mode': 'rgb'}),]))
-
-COLORS_DICT = dict(red=(255, 0, 0), green=(0, 255, 0), blue=(0, 0, 255), spread=(128, 128, 128))
-
-
-
-IMAGE_TYPES = ['red', 'green', 'blue']
-COLOR_LIST = utils.plot_colors
-crosshair_pens = make_dashed_pens(color=(255, 255, 0))
-
-
-def image_item_factory(item_type='uniform', axisOrder='row-major', pen='r'):
-    if item_type == 'uniform':
-        image = UniformImageItem(pen=pen)
-        image.setOpts(axisOrder=axisOrder)
-    elif item_type == 'spread':
-        image = SpreadImageItem(pen=pen)
-    image.setCompositionMode(QtGui.QPainter.CompositionMode_Plus)
-    return image
-
-
-def histogram_factory(image_item=None, gradient='red'):
-    """
-    Create a pyqtgraph HistogramLUTWidget widget (histogram) and link it to the corresponding image_item
-    Parameters
-    ----------
-    image_item: (ImageItem) the image item to be linked with the histogram
-    gradient: (str) either 'red', 'green', 'blue', 'spread' or one of the Gradients
-
-    Returns
-    -------
-    HistogramLUTWidget instance
-    """
-
-    if gradient not in Gradients:
-        raise KeyError(f'Possible gradient are {Gradients} not {gradient}')
-
-    histo = pg.HistogramLUTWidget()
-    if image_item is not None:
-        histo.setImageItem(image_item)
-
-    histo.gradient.loadPreset(gradient)
-    return histo
-
-
-class ImageDisplayer(QObject):
-    """
-    This Object deals with the display of 2D data  with a plotitem
-    """
-
-    updated_item = Signal(dict)
-
-    def __init__(self, plotitem, data_distribution: DataDistribution):
-        super().__init__()
-        self._plotitem = plotitem
-        self._plotitem.addLegend()
-        self.show_legend(False)
-        self.display_type = data_distribution
-        self._image_items = dict([])
-        self._autolevels = False
-        self._data: DataWithAxes = None
-
-        self.update_display_items()
-
-    def show_legend(self, show=True):
-        self.legend.setVisible(show)
-
-    @property
-    def legend(self):
-        return self._plotitem.legend
-
-    def get_images(self):
-        return self._image_items
-
-    def get_image(self, name):
-        if name not in self._image_items:
-            raise KeyError(f'The image {name} is not defined in {self.__class__.__name__}')
-        else:
-            return self._image_items[name]
-
-    @property
-    def labels(self):
-        if self._data is None:
-            return []
-        else:
-            return self._data.labels
-
-    @property
-    def autolevels(self):
-        return self._autolevels
-
-    @Slot(bool)
-    def set_autolevels(self, isautolevel):
-        self._autolevels = isautolevel
-
-    def update_data(self, dwa: DataWithAxes):
-        if dwa.labels != self.labels:
-            self.update_display_items(dwa.labels)
-        if dwa.distribution != self.display_type:
-            self.display_type = dwa.distribution
-        self._data = dwa
-        for ind_data, data_array in enumerate(dwa.data):
-            if data_array.size > 0:
-                if self.display_type == 'uniform':
-                    self._image_items[IMAGE_TYPES[ind_data]].setImage(data_array, self.autolevels)
-                else:
-                    nav_axes = dwa.get_nav_axes()
-                    data_array = np.stack((nav_axes[0].get_data(),
-                                           nav_axes[1].get_data(),
-                                           data_array), axis=0).T
-                    self._image_items[IMAGE_TYPES[ind_data]].setImage(data_array, self.autolevels)
-
-    def update_display_items(self, labels: List[str] = None):
-        while len(self._image_items) > 0:
-            self._plotitem.removeItem(self._image_items.pop(next(iter(self._image_items))))
-        if labels is None:
-            labels = []
-            while len(labels) != len(IMAGE_TYPES):
-                labels.append(IMAGE_TYPES[len(labels)])
-
-        for ind, img_key in enumerate(IMAGE_TYPES):
-            self._image_items[img_key] = image_item_factory(self.display_type, pen=img_key[0])
-            self._plotitem.addItem(self._image_items[img_key])
-            if ind < len(labels):
-                self.legend.addItem(self._image_items[img_key], labels[ind])
-        self.updated_item.emit(self._image_items)
-
-    def update_image_visibility(self, are_items_visible):
-        if len(are_items_visible) != len(self._image_items):
-            raise ValueError(f'The length of the argument is not equal with the number of images')
-        for ind, key in enumerate(IMAGE_TYPES):
-            self._image_items[key].setVisible(are_items_visible[ind])
-
-
-class Histogrammer(QObject):
-    gradient_changed = Signal()
-
-    def __init__(self, histogram_container: QtWidgets.QWidget, histogram_refs=IMAGE_TYPES):
-        super().__init__()
-        self._histograms = dict([])
-        self._histogram_refs = histogram_refs
-        self._histogram_container = histogram_container
-        self.setup_histograms()
-        self._autolevels = False
-
-    def setup_histograms(self):
-        for histo_key in self._histogram_refs:
-            self._histograms[histo_key] = histogram_factory(None, gradient=histo_key)
-            self.add_histogram(self._histograms[histo_key])
-            self._histograms[histo_key].setVisible(False)
-            self._histograms[histo_key].item.sigLookupTableChanged.connect(lambda: self.gradient_changed.emit())
-
-    def get_histograms(self):
-        return self._histograms
-
-    def get_histogram(self, name):
-        if name not in self.get_histograms():
-            raise KeyError(f'The histogram {name} is not defined in {self.__class__.__name__}')
-        else:
-            return self._histograms[name]
-
-    @property
-    def autolevels(self):
-        return self._autolevels
-
-    @Slot(bool)
-    def set_autolevels(self, isautolevels=True):
-        self._autolevels = isautolevels
-        for histo in self._histograms.values():
-            histo.region.setVisible(not isautolevels)
-
-    @Slot(bool)
-    def activated(self, histo_action_checked):
-        if histo_action_checked:
-            for histo in self._histograms.values():
-                histo.regionChanged()
-
-    def affect_histo_to_imageitems(self, image_items):
-        # TODO: if self._histogram_refs doesn't contains the same refs as image_items, we have an issue...
-        for img_key in self._histogram_refs:
-            self._histograms[img_key].setImageItem(image_items[img_key])
-
-    def add_histogram(self, histogram):
-        if self._histogram_container.layout() is None:
-            self._histogram_container.setLayout(QtWidgets.QHBoxLayout())
-        self._histogram_container.layout().addWidget(histogram)
-
-    def show_hide_histogram(self, checked, are_items_visible):
-        for ind_histo, histo_name in enumerate(self._histogram_refs):
-            self._histograms[histo_name].setVisible(are_items_visible[ind_histo] and checked)
-
-    def set_gradient(self, histo='red', gradient='grey'):
-        """
-        Change the color gradient of the specified histogram
-        Parameters
-        ----------
-        histo: (str) either 'red', 'green', 'blue', 'spread' or 'all'
-        gradient: (str or Gradient)
-        """
-        if gradient in Gradients:
-            if histo == 'all':
-                for key in self._histogram_refs:
-                    self._histograms[key].item.gradient.loadPreset(gradient)
-            else:
-                self._histograms[histo].item.gradient.loadPreset(gradient)
-
-
-class IsoCurver(QObject):
-    def __init__(self, image_source, histogram_parent):
-        super().__init__()
-        self._histogram_parent = histogram_parent
-        self.setup_iso_curve()
-        self.update_image_source(image_source)
-        self.update_histogram_parent(histogram_parent)
-        self.show_hide_iso(False)
-
-    def setup_iso_curve(self, parent_image_item='red'):
-        # # Isocurve drawing
-        self._isocurve_item = pg.IsocurveItem(level=0.8, pen='g', axisOrder='row-major')
-        self._isocurve_item.setZValue(5)
-
-        # # Draggable line for setting isocurve level
-        self._isoLine = pg.InfiniteLine(angle=0, movable=True, pen='g')
-        self._isoLine.setValue(0.8)
-        self._isoLine.setZValue(1000)  # bring iso line above contrast controls
-
-        self._isoLine.sigDragged.connect(self.update_isocurve)
-
-    def update_image_source(self, image_source):
-        self._isocurve_item.setParentItem(image_source)
-
-    def update_histogram_parent(self, histogram):
-        if histogram != self._histogram_parent:
-            histogram.vb.removeItem(self._isoLine)
-            self._histogram_parent = histogram
-        histogram.vb.addItem(self._isoLine)
-        histogram.vb.setMouseEnabled(y=False)  # makes user interaction a little easier
-
-    def update_isocurve(self):
-        self._isocurve_item.setLevel(self._isoLine.value())
-
-    def set_isocurve_data(self, data):
-        self._isocurve_item.setData(data)
-
-    @Slot(bool)
-    def show_hide_iso(self, show=True):
-        if show:
-            self._isocurve_item.show()
-            self._isoLine.show()
-        else:
-            self._isocurve_item.hide()
-            self._isoLine.hide()
-
-
-class View2D(ActionManager, QtCore.QObject):
-
-    lineout_types = ['hor', 'ver', 'int']
-
-    def __init__(self, parent_widget=None):
-        QtCore.QObject.__init__(self)
-        ActionManager.__init__(self, toolbar=QtWidgets.QToolBar())
-
-        self.ROIselect = SimpleRectROI([0, 0], [10, 10], centered=True, sideScalers=True)
-
-        self._lineout_widgets = {widg_key: QtWidgets.QWidget() for widg_key in self.lineout_types}
-        self.lineout_viewers: Dict[str, Viewer1D] = dict(hor=Viewer1D(self._lineout_widgets['hor'], show_toolbar=False, no_margins=True),
-                                    ver=Viewer1D(self._lineout_widgets['ver'], show_toolbar=False, no_margins=True,
-                                                 flip_axes=True),
-                                    int=Viewer0D(self._lineout_widgets['int'], show_toolbar=False, no_margins=True))
-
-        self.setup_actions()
-
-        self.parent_widget = parent_widget
-        if self.parent_widget is None:
-            self.parent_widget = QtWidgets.QWidget()
-            self.parent_widget.show()
-
-        self.image_widget = ImageWidget()
-        self.roi_manager = ROIManager(self.image_widget, '2D')
-
-        self.roi_target: Union[pgROI, Crosshair] = None
-
-        self.setup_widgets()
-
-        self.histogrammer = Histogrammer(self.widget_histo)
-        self.data_displayer: ImageDisplayer = None
-        self.isocurver: IsoCurver = None
-
-        self.crosshair = Crosshair(self.image_widget)
-
-        self.connect_things()
-        self.prepare_ui()
-
-        self.set_axis_label('bottom', label='', units='Pxls')
-        self.set_axis_label('left', label='', units='Pxls')
-
-        self.set_image_displayer(DataDistribution['uniform'])
-
-    def clear_plot_item(self):
-        for item in self.plotitem.items[:]:
-            if isinstance(item, SpreadImageItem) or isinstance(item, UniformImageItem):
-                self.plotitem.removeItem(item)
-
-    def set_image_displayer(self, data_distribution: DataDistribution):
-        self.clear_plot_item()
-        self.data_displayer = ImageDisplayer(self.plotitem, data_distribution)
-        self.isocurver = IsoCurver(self.data_displayer.get_image('red'), self.histogrammer.get_histogram('red'))
-        self.connect_action('isocurve', self.isocurver.show_hide_iso)
-        self.data_displayer.updated_item.connect(self.histogrammer.affect_histo_to_imageitems)
-        self.connect_action('autolevels', self.data_displayer.set_autolevels)
-        for key in IMAGE_TYPES:
-            self.connect_action(key, self.notify_visibility_data_displayer)
-
-        self.histogrammer.affect_histo_to_imageitems(self.data_displayer.get_images())
-
-        if data_distribution.name == 'uniform':
-            self.roi_target = pgROI(pos=(0, 0), size=(20, 20), movable=False, rotatable=False,
-                                    resizable=False)
-            self.plotitem.addItem(self.roi_target)
-
-        elif data_distribution.name == 'spread':
-            self.roi_target = Crosshair(self.image_widget, pen=(255, 255, 255))
-        self.roi_target.setVisible(False)
-
-    def show_roi_target(self, show=True):
-        self.roi_target.setVisible(show)
-
-    def move_scale_roi_target(self, pos=None, size=None):
-        """
-        Move and scale the target ROI (used to display a particular area,
-        for instance the currently scanned points
-        during a scan
-        Parameters
-        ----------
-        pos: (iterable) setting the central position of the ROI in the view
-        size: (iterable) setting the size of the ROI
-        """
-        if isinstance(self.roi_target, pgROI):
-            if size is not None:
-                x_offset, x_scaling, y_offset, y_scaling = self._get_axis_scaling_offset()
-                size = list(np.divide(list(size), [x_scaling, y_scaling]))
-                if list(self.roi_target.size()) != size:
-                    self.roi_target.setSize(size, center=(0.5, 0.5))
-
-            if pos is not None:
-                pos = self.unscale_axis(*list(pos))
-                pos = list(pos)
-                if list(self.roi_target.pos()) != pos:
-                    self.roi_target.setPos(pos)
-
-        else:
-            self.roi_target.set_crosshair_position(*list(pos))
-
-    def setup_widgets(self):
-        vertical_layout = QtWidgets.QVBoxLayout()
-        vertical_layout.setContentsMargins(5, 5, 5, 5)
-        self.parent_widget.setLayout(vertical_layout)
-        splitter_vertical = QtWidgets.QSplitter(QtCore.Qt.Vertical)
-        vertical_layout.addWidget(splitter_vertical)
-        splitter_vertical.addWidget(self.toolbar)
-
-        self.graphs_widget = QtWidgets.QWidget()
-        self.graphs_widget.setLayout(QtWidgets.QHBoxLayout())
-        self.graphs_widget.layout().setContentsMargins(0, 0, 0, 0)
-        self.setup_graphs(self.graphs_widget.layout())
-        splitter_vertical.addWidget(self.graphs_widget)
-
-        self.plotitem.addItem(self.ROIselect)
-
-        self.splitter_VLeft.splitterMoved[int, int].connect(self.move_right_splitter)
-        self.splitter_VRight.splitterMoved[int, int].connect(self.move_left_splitter)
-
-        self.splitter_VLeft.setSizes([1, 0])
-        self.splitter_VRight.setSizes([1, 0])
-
-    def setup_graphs(self, graphs_layout):
-        self.splitter = QtWidgets.QSplitter(QtCore.Qt.Horizontal)
-        graphs_layout.addWidget(self.splitter)
-
-        self.widget_histo = QtWidgets.QWidget()
-        graphs_layout.addWidget(self.widget_histo)
-        self.widget_histo.setLayout(QtWidgets.QHBoxLayout())
-
-        self.splitter_VLeft = QtWidgets.QSplitter(QtCore.Qt.Vertical)
-        self.splitter_VRight = QtWidgets.QSplitter(QtCore.Qt.Vertical)
-
-        self.splitter.addWidget(self.splitter_VLeft)
-        self.splitter.addWidget(self.splitter_VRight)
-
-        self.splitter_VLeft.addWidget(self.image_widget)
-        self.splitter_VLeft.addWidget(self._lineout_widgets['hor'])
-        self.splitter_VRight.addWidget(self._lineout_widgets['ver'])
-        self.splitter_VRight.addWidget(self._lineout_widgets['int'])
-
-        self.image_widget.add_scaled_axis('right')
-        self.image_widget.add_scaled_axis('top')
-        self.image_widget.add_scaled_axis('left')
-        self.image_widget.add_scaled_axis('bottom')
-        self.splitter.addWidget(self.roi_manager.roiwidget)
-        self.roi_manager.roiwidget.setVisible(False)
-
-    def setup_actions(self):
-
-        self.add_action('position', '(,)')
-        self.add_action('red', 'Red Channel', 'r_icon', tip='Show/Hide Red Channel', checkable=True)
-        self.add_action('green', 'Green Channel', 'g_icon', tip='Show/Hide Green Channel', checkable=True)
-        self.add_action('blue', 'Blue Channel', 'b_icon', tip='Show/Hide Blue Channel', checkable=True)
-        self.get_action('red').setChecked(True)
-        self.get_action('green').setChecked(True)
-        self.get_action('blue').setChecked(True)
-
-        self.add_action('autolevels', 'AutoLevels', 'autoscale',
-                        tip='Scale Histogram to Min/Max intensity', checkable=True)
-        self.add_action('auto_levels_sym', 'AutoLevels Sym.', 'autoscale',
-                        tip='Make the autoscale of the histograms symetric with respect to 0', checkable=True)
-
-        self.add_action('histo', 'Histogram', 'Histogram', tip='Show/Hide Histogram', checkable=True)
-        self.add_action('roi', 'ROI', 'Region', tip='Show/Hide ROI Manager', checkable=True)
-        self.add_action('isocurve', 'IsoCurve', 'meshPlot', tip='Show/Hide Isocurve', checkable=True)
-        self.add_action('aspect_ratio', 'Aspect Ratio', 'Zoom_1_1', tip='Fix Aspect Ratio', checkable=True, checked=True)
-        self.add_action('crosshair', 'CrossHair', 'reset', tip='Show/Hide data Crosshair', checkable=True)
-        self.add_action('ROIselect', 'ROI Select', 'Select_24',
-                        tip='Show/Hide ROI selection area', checkable=True)
-        self.add_action('flip_ud', 'Flip UD', 'scale_vertically',
-                        tip='Flip the image up/down', checkable=True)
-        self.add_action('flip_lr', 'Flip LR', 'scale_horizontally',
-                        tip='Flip the image left/right', checkable=True)
-        self.add_action('rotate', 'Rotate', 'rotation2',
-                        tip='Rotate the image', checkable=True)
-        self.add_action('legend', 'Legend', 'RGB',
-                        tip='Show the legend', checkable=True)
-
-    def update_colors(self, colors: list):
-        for ind, roi_name in enumerate(self.roi_manager.ROIs):
-            self.lineout_viewers['hor'].update_colors(make_dashed_pens(colors[ind]), displayer=roi_name)
-            self.lineout_viewers['ver'].update_colors(make_dashed_pens(colors[ind]), displayer=roi_name)
-            self.lineout_viewers['int'].update_colors(make_dashed_pens(colors[ind]), displayer=roi_name)
-
-    def connect_things(self):
-        self.connect_action('histo', self.histogrammer.activated)
-        self.connect_action('autolevels', self.histogrammer.set_autolevels)
-        self.roi_manager.new_ROI_signal.connect(self.update_roi_channels)
-        self.roi_manager.new_ROI_signal.connect(self.add_roi_displayer)
-        self.roi_manager.new_ROI_signal.connect(self.lineout_viewers['int'].get_action('clear').click)
-        self.roi_manager.remove_ROI_signal.connect(self.remove_roi_displayer)
-        self.roi_manager.color_signal.connect(self.update_colors)
-        self.connect_action('isocurve', self.get_action('histo').trigger)
-
-        self.connect_action('aspect_ratio', self.lock_aspect_ratio)
-        self.connect_action('histo', self.show_hide_histogram)
-        self.connect_action('roi', self.show_lineout_widgets)
-        self.connect_action('roi', self.roi_clicked)
-        self.connect_action('ROIselect', self.show_ROI_select)
-        self.connect_action('crosshair', self.show_hide_crosshair)
-        self.connect_action('crosshair', self.show_lineout_widgets)
-        self.connect_action('legend', self.show_legend)
-
-    def show_legend(self, show=True):
-        self.data_displayer.show_legend(show)
-
-    @Slot(int, str, str)
-    def add_roi_displayer(self, index, roi_type='', roi_name=''):
-        color = self.roi_manager.ROIs[roi_name].color
-        self.lineout_viewers['hor'].view.add_data_displayer(roi_name, make_dashed_pens(color))
-        self.lineout_viewers['ver'].view.add_data_displayer(roi_name, make_dashed_pens(color))
-        self.lineout_viewers['int'].view.add_data_displayer(roi_name, make_dashed_pens(color))
-
-    @Slot(str)
-    def remove_roi_displayer(self, roi_name=''):
-        self.lineout_viewers['hor'].view.remove_data_displayer(roi_name)
-        self.lineout_viewers['ver'].view.remove_data_displayer(roi_name)
-        self.lineout_viewers['int'].view.remove_data_displayer(roi_name)
-
-    @Slot(int, str, str)
-    def update_roi_channels(self, index, roi_type=''):
-        """Update the use_channel setting each time a ROI is added"""
-        self.roi_manager.update_use_channel(self.data_displayer.labels.copy())
-
-    def prepare_ui(self):
-        self.ROIselect.setVisible(False)
-        self.show_hide_crosshair(False)
-        self.show_lineout_widgets()
-
-    @Slot(DataRaw)
-    def display_images(self, datas):
-        self.data_displayer.update_data(datas)
-        if self.is_action_checked('isocurve'):
-            self.isocurver.set_isocurve_data(datas.data[0])
-
-    def display_roi_lineouts(self, roi_dte: DataToExport):
-        if len(roi_dte) > 0:
-            for lineout_type in self.lineout_types:
-                for displayer_name in self.lineout_viewers[lineout_type].view.other_data_displayers:
-                    dwa = roi_dte.get_data_from_name_origin(lineout_type, displayer_name)
-                    if dwa is not None:
-                        self.lineout_viewers[lineout_type].view.display_data(dwa.deepcopy(),
-                                                                             displayer=displayer_name)
-
-    def display_crosshair_lineouts(self, crosshair_dte: DataToExport):
-        for lineout_type in self.lineout_types:
-            dwa = crosshair_dte.get_data_from_name(lineout_type)
-            if dwa is not None:
-                self.lineout_viewers[lineout_type].view.display_data(dwa, displayer='crosshair')
-
-    def show_lineout_widgets(self):
-        state = self.is_action_checked('roi') or self.is_action_checked('crosshair')
-        if state:
-            self.prepare_image_widget_for_lineouts()
-        else:
-            self.prepare_image_widget_for_lineouts(1)
-
-    @Slot(bool)
-    def roi_clicked(self, isroichecked=True):
-        self.roi_manager.roiwidget.setVisible(isroichecked)
-
-        for k, roi in self.roi_manager.ROIs.items():
-            roi.setVisible(isroichecked)
-
-    def get_visible_images(self):
-        are_items_visible = []
-        for key in IMAGE_TYPES:
-            are_items_visible.append(self.is_action_visible(key) and self.is_action_checked(key))
-        return are_items_visible
-
-    def notify_visibility_data_displayer(self):
-        are_items_visible = self.get_visible_images()
-        self.data_displayer.update_image_visibility(are_items_visible)
-
-    @Slot(bool)
-    def show_hide_histogram(self, show=True):
-        are_items_visible = self.get_visible_images()
-        self.histogrammer.show_hide_histogram(show, are_items_visible)
-
-    def prepare_image_widget_for_lineouts(self, ratio=0.7):
-        QtGui.QGuiApplication.processEvents()
-        self.splitter_VRight.splitterMoved[int, int].emit(int(ratio * self.parent_widget.height()), 1)
-        self.splitter.moveSplitter(int(ratio * self.parent_widget.width()), 1)
-        self.splitter_VLeft.moveSplitter(int(ratio * self.parent_widget.height()), 1)
-        self.splitter_VLeft.splitterMoved[int, int].emit(int(ratio * self.parent_widget.height()), 1)
-        QtGui.QGuiApplication.processEvents()
-
-    def collapse_lineout_widgets(self):
-        self.prepare_image_widget_for_lineouts(ratio=1)
-
-    def get_view_range(self):
-        return self.image_widget.view.viewRange()
-
-    def get_data_at(self, name='red', xy=(0, 0)):
-        return self.data_displayer.get_image(name).get_val_at(xy)
-
-    def lock_aspect_ratio(self):
-        lock = self.is_action_checked('aspect_ratio')
-        self.plotitem.vb.setAspectLocked(lock=lock, ratio=1)
-
-    @Slot(int, int)
-    def move_left_splitter(self, pos, index):
-        self.splitter_VLeft.blockSignals(True)
-        self.splitter_VLeft.moveSplitter(pos, index)
-        self.splitter_VLeft.blockSignals(False)
-
-    @Slot(int, int)
-    def move_right_splitter(self, pos, index):
-        self.splitter_VRight.blockSignals(True)
-        self.splitter_VRight.moveSplitter(pos, index)
-        self.splitter_VRight.blockSignals(False)
-
-    def get_double_clicked(self):
-        return self.image_widget.view.sig_double_clicked
-
-    def get_axis(self, position='left') -> AxisItem_Scaled:
-        if position not in AXIS_POSITIONS:
-            raise KeyError(f'{position} is not a possible position for Axis: {AXIS_POSITIONS}')
-        return self.image_widget.getAxis(position)
-
-    @property
-    def plotitem(self):
-        return self.image_widget.plotitem
-
-    def get_crosshair_signal(self):
-        """Convenience function from the Crosshair"""
-        return self.crosshair.crosshair_dragged
-
-    def get_crosshair_position(self):
-        """Convenience function from the Crosshair"""
-        return self.crosshair.get_positions()
-
-    def set_crosshair_position(self, *positions):
-        """Convenience function from the Crosshair"""
-        self.crosshair.set_crosshair_position(*positions)
-
-    @Slot(bool)
-    def show_hide_crosshair(self, show=True):
-        self.crosshair.setVisible(show)
-        self.set_action_visible('position', show)
-        self.crosshair.setVisible(show)
-        if show:
-            self.lineout_viewers['hor'].view.add_data_displayer('crosshair', plot_colors=crosshair_pens)
-            self.lineout_viewers['ver'].view.add_data_displayer('crosshair', plot_colors=crosshair_pens)
-            self.lineout_viewers['int'].view.add_data_displayer('crosshair', plot_colors=crosshair_pens)
-            range = self.get_view_range()
-            self.set_crosshair_position(np.mean(np.array(range[0])), np.mean(np.array(range[0])))
-        else:
-            self.lineout_viewers['hor'].view.remove_data_displayer('crosshair')
-            self.lineout_viewers['ver'].view.remove_data_displayer('crosshair')
-            self.lineout_viewers['int'].view.remove_data_displayer('crosshair')
-        logger.debug(f'Crosshair visible?: {self.crosshair.isVisible()}')
-
-    def show_ROI_select(self):
-        self.ROIselect.setVisible(self.is_action_checked('ROIselect'))
-        rect = self.data_displayer.get_image('red').boundingRect()
-        self.ROIselect.setPos(rect.center()-QtCore.QPointF(rect.width() * 2 / 3, rect.height() * 2 / 3)/2)
-        self.ROIselect.setSize(rect.size() * 2 / 3)
-
-    def set_image_labels(self, labels: List[str]):
-        if self.data_displayer.labels != labels:
-            action_names =['red', 'green', 'blue']
-            for action_name, label in zip(action_names[:len(labels)], labels):
-                self.get_action(action_name).setToolTip('Show/Hide'
-                                                        f' - '
-                                                        f'{label}')
-
-    def set_axis_label(self, position, label='', units=''):
-        """
-        Convenience method to set label and unit of any view axes
-        Parameters
-        ----------
-        position: (str) any of AXIS_POSITIONS
-        label: (str) text of the axis label
-        units: (str) units of the axis label
-        """
-        axis = self.get_axis(position)
-        axis.setLabel(text=label, units=units)
-
-    def get_axis_label(self, position):
-        axis = self.get_axis(position)
-        return axis.axis_label, axis.axis_units
-
-    def set_axis_scaling(self, position='top', scaling=1, offset=0, label='', units='Pxls'):
-        """
-        Method used to update the scaling of the right and top axes in order to translate pixels to real coordinates
-        Parameters
-        ----------
-        position: (str) axis position either one of AXIS_POSITIONS
-        scaling: (float) scaling of the axis
-        offset: (float) offset of the axis
-        label: (str) text of the axis label
-        units: (str) units of the axis label
-        """
-        if scaling is None:
-            scaling = 1
-        if offset is None:
-            offset = 0
-        self.get_axis(position).axis_scaling = scaling
-        self.get_axis(position).axis_offset = offset
-        self.set_axis_label(position, label=label, units=units)
-
-    def scale_axis(self, xaxis, yaxis):
-        """scale view coordinates from the regular axes to the scaled/offset ones"""
-        x_offset, x_scaling, y_offset, y_scaling = self._get_axis_scaling_offset()
-        return xaxis * x_scaling + x_offset, yaxis * y_scaling + y_offset
-
-    def unscale_axis(self, xaxis, yaxis):
-        """scale view coordinates from the scaled/offset axes to the regular ones"""
-        x_offset, x_scaling, y_offset, y_scaling = self._get_axis_scaling_offset()
-        return (xaxis - x_offset) / x_scaling, (yaxis - y_offset) / y_scaling
-
-    def _get_axis_scaling_offset(self):
-        x_offset = self.get_axis('top').axis_offset
-        x_scaling = self.get_axis('top').axis_scaling
-        y_offset = self.get_axis('right').axis_offset
-        y_scaling = self.get_axis('right').axis_scaling
-        return x_offset, x_scaling, y_offset, y_scaling
-
-
-class Viewer2D(ViewerBase):
-    """Object managing plotting and manipulation of 2D data using a View2D"""
-
-    def __init__(self, parent: QtWidgets.QWidget = None, title=''):
-        super().__init__(parent, title)
-
-        self.just_init = True
-
-        self._datas = None
-        self.isdata = dict([])
-        self._is_gradient_manually_set = False
-
-        self.view = View2D(parent)
-        self.filter_from_rois = Filter2DFromRois(self.view.roi_manager, self.view.data_displayer.get_image('red'),
-                                                 IMAGE_TYPES)
-        self.filter_from_rois.register_activation_signal(self.view.get_action('roi').triggered)
-        self.filter_from_rois.register_target_slot(self.process_roi_lineouts)
-
-        self.filter_from_crosshair = Filter2DFromCrosshair(self.view.crosshair, self.view.data_displayer.get_images(),
-                                                           IMAGE_TYPES)
-        self.filter_from_crosshair.register_activation_signal(self.view.get_action('crosshair').triggered)
-        self.filter_from_crosshair.register_target_slot(self.process_crosshair_lineouts)
-
-        self.prepare_connect_ui()
-
-    @property
-    def roi_manager(self):
-        """Convenience method """
-        return self.view.roi_manager
-
-    @property
-    def roi_target(self) -> pgROI:
-        return self.view.roi_target
-
-    def move_roi_target(self, pos: Iterable[float] = None, size: Iterable[float] = (1, 1)):
-        """move a specific read only ROI at the given position on the viewer"""
-        self.view.move_scale_roi_target(pos, size)
-
-    @property
-    def crosshair(self):
-        """Convenience method """
-        return self.view.crosshair
-
-    @property
-    def image_widget(self):
-        """Convenience method """
-        return self.view.image_widget
-
-    def get_data_at(self):
-        """Convenience method """
-        return self.view.get_data_at()
-
-    def set_crosshair_position(self, xpos, ypos):
-        """Convenience method to set the crosshair positions"""
-        self.view.crosshair.set_crosshair_position(xpos=xpos, ypos=ypos)
-
-    def activate_roi(self, activate=True):
-        """Activate the Roi manager using the corresponding action"""
-        self.view.set_action_checked('roi', activate)
-        self.view.get_action('roi').triggered.emit(activate)
-
-    def roi_changed(self, *args, **kwargs):
-        self.filter_from_rois.filter_data(self._datas)
-
-    def crosshair_changed(self):
-        self.filter_from_crosshair.filter_data(self._datas)
-
-    def set_gradient(self, image_key, gradient):
-        """convenience function"""
-        self.view.histogrammer.set_gradient(image_key, gradient)
-
-    def _show_data(self, data: DataFromPlugins):
-        """Data to be plotted and eventually filtered using ROI...
-
-        Parameters
-        ----------
-        data: DataFromPlugins
-
-        """
-
-        if len(data) == 1 and not self._is_gradient_manually_set:
-            self.set_gradient('red', 'grey')
-        if len(data) > 3:
-            logger.warning('Cannot plot on 2D plot more than 3 channels')
-            data.data = data.data[:3]
-        self.view.set_image_labels(data.labels)
-        if data.distribution != self.view.data_displayer.display_type:
-            self.view.set_image_displayer(data.distribution)
-            self.filter_from_crosshair.set_graph_items(self.view.data_displayer.get_images())
-
-        self.get_axes_from_view(data)  # in case axes were not specified into data, one try to get them from the view
-
-        self.isdata['red'] = len(data) > 0
-        self.isdata['green'] = len(data) > 1
-        self.isdata['blue'] = len(data) > 2
-
-        self.update_data()
-
-        self.set_visible_items()
-        if not self.view.is_action_checked('roi'):
-            self.data_to_export_signal.emit(self.data_to_export)
-
-        self.autolevels_first()
-
-    def autolevels_first(self):
-        if self.just_init and not self.is_action_checked('autolevels'):
-            self.get_action('autolevels').trigger()
-            self.update_data()
-            self.get_action('autolevels').trigger()
-            self.just_init = False
-
-    def get_axes_from_view(self, data: DataWithAxes):
-        """Obtain axes info from the view
-
-        Only for uniform data
-        """
-        if data.distribution == DataDistribution['uniform']:
-            if data.get_axis_from_index(0)[0] is None:
-                axis_view = self.view.get_axis('right')
-                axis = Axis(axis_view.axis_label, units=axis_view.axis_units,
-                            scaling=axis_view.axis_scaling, offset=axis_view.axis_offset, index=0)
-                axis.create_linear_data(data.shape[0])
-                data.axes.append(axis)
-            if data.get_axis_from_index(1)[0] is None:
-                axis_view = self.view.get_axis('top')
-                axis = Axis(axis_view.axis_label, units=axis_view.axis_units,
-                            scaling=axis_view.axis_scaling, offset=axis_view.axis_offset, index=1)
-                axis.create_linear_data(data.shape[1])
-                data.axes.append(axis)
-
-    def update_data(self):
-        if self._raw_data is not None:
-            self._datas = self.set_image_transform()
-            if self._datas.distribution.name == 'uniform':
-                self.x_axis = self._datas.get_axis_from_index(1)[0]
-                self.y_axis = self._datas.get_axis_from_index(0)[0]
-            else:
-                self.x_axis = self._datas.get_axis_from_index(0)[0]
-                self.y_axis = self._datas.get_axis_from_index(0)[1]
-            self.view.display_images(self._datas)
-
-            if self.view.is_action_checked('roi'):
-                self.roi_changed()
-
-            if self.view.is_action_checked('crosshair'):
-                self.crosshair_changed()
-
-    def set_image_transform(self) -> DataRaw:
-        """
-        Deactivate some tool buttons if data type is "spread" then apply transform_image
-        """
-        data = copy.deepcopy(self._raw_data)
-        self.view.set_action_visible('flip_ud', data.distribution != 'spread')
-        self.view.set_action_visible('flip_lr', data.distribution != 'spread')
-        self.view.set_action_visible('rotate', data.distribution != 'spread')
-        if data.distribution != 'spread':
-            for ind_data in range(len(data)):
-                data.data[ind_data] = self.transform_image(data.data[ind_data])
-        return data
-
-    def transform_image(self, data):
-        if self.view.is_action_checked('flip_ud'):
-            data = np.flipud(data)
-        if self.view.is_action_checked('flip_lr'):
-            data = np.fliplr(data)
-        if self.view.is_action_checked('rotate'):
-            data = np.flipud(np.transpose(data))
-        return data
-
-    def set_visible_items(self):
-        for key in IMAGE_TYPES:
-            self.view.set_action_visible(key, self.isdata[key])
-
-        self.view.notify_visibility_data_displayer()
-
-    def show_roi(self, show=True, show_roi_widget=True):
-        """convenience function to control roi"""
-        if show == (not self.view.is_action_checked('roi')):
-            self.view.get_action('roi').trigger()
-
-        self.view.roi_manager.roiwidget.setVisible(show_roi_widget)
-
-    def update_crosshair_data(self, crosshair_dte: DataToExport):
-        try:
-            posx, posy = self.view.get_crosshair_position()
-            (posx_scaled, posy_scaled) = self.view.scale_axis(posx, posy)
-
-            dat = f'({posx_scaled:.1e}{posy_scaled:.1e})\n'
-            dwa_int = crosshair_dte.get_data_from_name('int')
-            if dwa_int is not None:
-                for ind_data in range(len(dwa_int)):
-                    dat += f' {dwa_int.labels[ind_data]}:{float(dwa_int[ind_data][0]):.1e}\n'
-
-                self.view.set_action_text('position', dat)
-
-        except Exception as e:
-            logger.warning(str(e))
-
-    def prepare_connect_ui(self):
-        self.view.ROIselect.sigRegionChangeFinished.connect(self.selected_region_changed)
-
-        self.roi_manager.roi_changed.connect(self.roi_changed)
-        self.roi_manager.roi_value_changed.connect(self.roi_changed)
-
-        self.view.connect_action('flip_ud', slot=self.update_data)
-        self.view.connect_action('flip_lr', slot=self.update_data)
-        self.view.connect_action('rotate', slot=self.update_data)
-        self.view.connect_action('autolevels', slot=self.update_data)
-        self.view.connect_action('isocurve', slot=self.update_data)
-        self.view.histogrammer.gradient_changed.connect(lambda: setattr(self, '_is_gradient_manually_set', True))
-
-        # todo : self.view.lineout_plotter.roi_changed.connect(self.roi_changed)
-        self.view.get_crosshair_signal().connect(self.crosshair_changed)
-
-        self.view.get_double_clicked().connect(self.double_clicked)
-
-    def selected_region_changed(self):
-        if self.view.is_action_checked('ROIselect'):
-            pos = self.view.ROIselect.pos()
-            size = self.view.ROIselect.size()
-            # self.ROI_select_signal.emit(QtCore.QRectF(pos[0], pos[1], size[0], size[1]))
-            self.roi_select_signal.emit(RoiInfo.info_from_rect_roi(self.view.ROIselect))
-
-    @Slot(float, float)
-    def double_clicked(self, posx, posy):
-        if self.view.is_action_checked('crosshair'):
-            self.view.crosshair.set_crosshair_position(posx, posy)
-            self.crosshair_changed()
-        #scale positions of double_click with respect to real axes
-        posx, posy = self.view.scale_axis(posx, posy)
-        self.sig_double_clicked.emit(posx, posy)
-
-
-    @property
-    def x_axis(self):
-        return self.view.get_axis('top')
-
-    @x_axis.setter
-    def x_axis(self, axis: Axis = None):
-        if axis is not None:
-            self.view.set_axis_scaling('top', scaling=axis.scaling, offset=axis.offset,
-                                       label=axis.label, units=axis.units)
-
-    @property
-    def y_axis(self):
-        return self.view.get_axis('right')
-
-    @y_axis.setter
-    def y_axis(self, axis: Axis = None):
-        if axis is not None:
-            self.view.set_axis_scaling('right', scaling=axis.scaling, offset=axis.offset,
-                                       label=axis.label, units=axis.units)
-
-    @Slot(DataToExport)
-    def process_crosshair_lineouts(self, dte):
-        self.view.display_crosshair_lineouts(dte)
-        self.update_crosshair_data(dte)
-        self.crosshair_dragged.emit(*self.view.scale_axis(*self.view.crosshair.get_positions()))
-
-    def process_roi_lineouts(self, roi_dte: DataToExport):
-            if len(roi_dte) > 0:
-                self.view.display_roi_lineouts(roi_dte)
-                roi_dte_bis = roi_dte.deepcopy()
-                for dwa in roi_dte_bis.data:
-                    if dwa.name == 'hor':
-                        dwa.name = f'Hlineout_{dwa.origin}'
-                    elif dwa.name == 'ver':
-                        dwa.name = f'Vlineout_{dwa.origin}'
-                    elif dwa.name == 'int':
-                        dwa.name = f'Integrated_{dwa.origin}'
-                self.data_to_export.append(roi_dte_bis)
-
-                self.measure_data_dict = dict([])
-
-                for roi_name in roi_dte_bis.get_origins():
-                    dwa = roi_dte_bis.get_data_from_name_origin(f'Integrated_{roi_name}', roi_name)
-                    for ind, data_array in enumerate(dwa.data):
-                            self.measure_data_dict[f'{dwa.labels[ind]}:'] = float(data_array[0])
-
-                    QtWidgets.QApplication.processEvents()
-
-                self.view.roi_manager.settings.child('measurements').setValue(self.measure_data_dict)
-                if not self._display_temporary:
-                    self.data_to_export_signal.emit(self.data_to_export)
-                self.ROI_changed.emit()
-
-
-def main_spread():
-    app = QtWidgets.QApplication(sys.argv)
-    widget = QtWidgets.QWidget()
-    prog = Viewer2D(widget)
-    widget.show()
-
-    def print_data(data: DataToExport):
-        print(data)
-        print('******')
-        print(data.get_data_from_dim('Data1D'))
-
-
-    prog.data_to_export_signal.connect(print_data)
-
-    data_spread = np.load('../../../resources/triangulation_data.npy')
-    # data_shuffled = data
-    # np.random.shuffle(data_shuffled)
-    # prog.show_data(utils.DataFromPlugins(name='mydata', distribution='spread',
-    #                                      data=[data, data_shuffled]))
-
-    prog.view.get_action('histo').trigger()
-    prog.view.get_action('autolevels').trigger()
-
-    prog.show_data(DataFromPlugins(name='mydata', distribution='spread', data=[data_spread],
-                                   axes=[]))
-
-    sys.exit(app.exec_())
-
-
-def main(data_distribution='uniform'):
-    """either 'uniform' or 'spread'"""
-
-    app = QtWidgets.QApplication(sys.argv)
-    widget = QtWidgets.QWidget()
-
-    widget_button = QtWidgets.QWidget()
-    widget_button.setLayout(QtWidgets.QHBoxLayout())
-    button = QtWidgets.QPushButton('New Data')
-    ndata = QtWidgets.QSpinBox()
-    widget_button.layout().addWidget(button)
-    widget_button.layout().addWidget(ndata)
-
-    def print_data(data: DataToExport):
-        print(data)
-        print('******')
-        print(data.get_data_from_dim('Data1D'))
-
-    if data_distribution == 'uniform':
-        data_to_plot = generate_uniform_data()
-
-    elif data_distribution == 'spread':
-        data_spread = np.load('../../../resources/triangulation_data.npy')
-        data_to_plot = DataFromPlugins(name='mydata', distribution='spread', data=[data_spread[:,2]],
-                                       nav_indexes=(0,),
-                                       axes=[Axis('xaxis', units='xpxl', data=data_spread[:,0], index=0, spread_order=0),
-                                             Axis('yaxis', units='ypxl', data=data_spread[:,1], index=0, spread_order=1),])
-
-    prog = Viewer2D(widget)
-    widget.show()
-    prog.data_to_export_signal.connect(print_data)
-
-    prog.view.get_action('histo').trigger()
-    prog.view.get_action('autolevels').trigger()
-
-    prog.show_data(data_to_plot)
-
-    prog.view.show_roi_target(True)
-    prog.view.move_scale_roi_target((50, 40), (10, 20))
-
-    button.clicked.connect(lambda: plot_data(prog, ndata.value()))
-    widget_button.show()
-    QtWidgets.QApplication.processEvents()
-    sys.exit(app.exec_())
-
-
-def generate_uniform_data() -> DataFromPlugins:
-    from pymodaq.utils.math_utils import gauss2D
-    Nx = 100
-    Ny = 2 * Nx
-    data_random = np.random.normal(size=(Ny, Nx))
-    x = 0.5 * np.linspace(-Nx / 2, Nx / 2 - 1, Nx)
-    y = 0.2 * np.linspace(-Ny / 2, Ny / 2 - 1, Ny)
-    data_red = 3 * np.sin(x / 5) ** 2 * gauss2D(x, 5, Nx / 10, y, -1, Ny / 10, 1, 90) + 0.2 * data_random
-    data_green = 10 * gauss2D(x, -20, Nx / 10, y, -10, Ny / 20, 1, 0)
-    data_green[70:80, 7:12] = np.nan
-
-    data_to_plot = DataFromPlugins(name='mydata', distribution='uniform',
-                                   data=[data_red, data_green, data_red-data_green],
-                                   labels = ['myreddata', 'mygreendata'],
-                                   axes=[Axis('xaxis', units='xpxl', data=x, index=1),
-                                         Axis('yaxis', units='ypxl', data=y, index=0), ])
-    return data_to_plot
-
-
-def plot_data(viewer2D: Viewer2D, ndata: int = 2):
-    if ndata > 0:
-        dwa = generate_uniform_data()
-        dwa.data = dwa.data[0:ndata]
-        viewer2D.show_data(dwa)
-
-
-def print_roi_select(rect):
-    print(rect)
-
-
-def main_view():
-    app = QtWidgets.QApplication(sys.argv)
-
-    form = QtWidgets.QWidget()
-    prog = View2D(form)
-    form.show()
-    sys.exit(app.exec_())
-
-
-if __name__ == '__main__':  # pragma: no cover
-
-    #main_view()
-    main('uniform')
-    #main('spread')