pymetadata 0.5.5__py3-none-any.whl → 0.5.6__py3-none-any.whl

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Files changed (6) hide show
  1. pymetadata/__init__.py +1 -1
  2. pymetadata/core/annotation.py +6 -2
  3. {pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/METADATA +3 -18
  4. {pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/RECORD +6 -6
  5. {pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/WHEEL +0 -0
  6. {pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/licenses/LICENSE +0 -0
pymetadata/__init__.py CHANGED
@@ -3,7 +3,7 @@
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  from pathlib import Path
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  __author__ = "Matthias Koenig"
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- __version__ = "0.5.5"
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+ __version__ = "0.5.6"
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  program_name: str = "pymetadata"
pymetadata/core/annotation.py CHANGED
@@ -184,7 +184,7 @@ class RDFAnnotation:
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  namespace = REGISTRY.ns_dict.get(collection, None)
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  if namespace and not namespace.namespaceEmbeddedInLui:
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  # shorter term
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- if term.lower().startswith(collection):
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+ if term.lower().startswith(f"{collection}:"):
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  tokens = term.split(":")
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  term = ":".join(tokens[1:])
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@@ -399,10 +399,14 @@ if __name__ == "__main__":
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  for annotation in [
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  RDFAnnotation(
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  qualifier=BQB.IS_VERSION_OF,
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- resource="https://bioregistry.io/chebi:15996",
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+ resource="hmdb/HMDB0000122",
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  ),
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  # RDFAnnotation(
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  # qualifier=BQB.IS_VERSION_OF,
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+ # resource="https://bioregistry.io/chebi:15996",
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+ # ),
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+ # RDFAnnotation(
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+ # qualifier=BQB.IS_VERSION_OF,
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  # resource="NCIT:C75913",
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  # ),
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  # RDFAnnotation(
{pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pymetadata
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- Version: 0.5.5
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+ Version: 0.5.6
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  Summary: pymetadata are python utilities for working with metadata.
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  Author-email: Matthias König <konigmatt@googlemail.com>
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  Maintainer-email: Matthias König <konigmatt@googlemail.com>
@@ -53,9 +53,9 @@ metadata in the context of COMBINE standards with source code available from
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  Features include among others
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- - [core](src/pymetadata/core)COMBINE archive version 1 support (OMEX)
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+ - COMBINE archive version 1 support (OMEX)
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  - annotation classes and helpers
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- - SBO and KISAO ontology enums
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+ - SBO, KISAO and ECO ontology enums
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  If you have any questions or issues please [open an issue](https://github.com/matthiaskoenig/pymetadata/issues).
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@@ -66,8 +66,6 @@ see [omex_example.py](src/pymetadata/examples/omex_example.py).
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  # How to cite
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  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5308801.svg)](https://doi.org/10.5281/zenodo.5308801)
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- # Contributing
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- Contributions are always welcome! Please read the [contributing guidelines](https://github.com/matthiaskoenig/pymetadata/blob/develop/.github/CONTRIBUTING.rst) to get started.
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  # License
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  - Source Code: [MIT](https://opensource.org/license/MIT)
@@ -84,19 +82,6 @@ can be installed via
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  pip install pymetadata
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  ```
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- ## Develop version
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- The latest develop version can be installed via
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- ```bash
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- pip install git+https://github.com/matthiaskoenig/pymetadata.git@develop
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- ```
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-
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- Or via cloning the repository and installing via
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- ```bash
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- git clone https://github.com/matthiaskoenig/pymetadata.git
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- cd pymetadata
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- pip install -e .
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- ```
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-
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  # Cache path
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  `pymetadata` caches some information for faster retrieval. The cache path is set to
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{pymetadata-0.5.5.dist-info → pymetadata-0.5.6.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- pymetadata/__init__.py,sha256=1d6h5LuMgrZeCih1nQMu8U9kgk8eZoeToAXxR42g924,357
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+ pymetadata/__init__.py,sha256=s7E9lTDrSmb06g7HXFOoL19eoHZ9mFoa82U0gcxh7F4,357
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  pymetadata/cache.py,sha256=tQuMIcd1cOfO0dvODQMG92_IrHqgswPfshhFjtl7Pd0,1409
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  pymetadata/chebi.py,sha256=P9OWSf8fzcjfMscPG8LORMNnFRUye-Ai-Y3NiGyG0uc,2822
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  pymetadata/console.py,sha256=ouDYOx_81ndvtMW5GVrut71uzPC5xlvibGu9N5YdbRA,332
@@ -8,7 +8,7 @@ pymetadata/omex_v2.py,sha256=HZBg_wmQWixweOZG3qVj2zqG_o1x9Ljxy-JEP6-ZFhM,584
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  pymetadata/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  pymetadata/unichem.py,sha256=SCdljAA6dsR3DrD_OrjRoXIMhgwVV-MiXoCiNMVo_-0,6894
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  pymetadata/core/__init__.py,sha256=VWZCD9TgSGldzdtXoarvp_2oUHKXQkC1T-VUSvMLwNA,28
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- pymetadata/core/annotation.py,sha256=2iLSGqxt77SID3MsIWH-eHiF0zvJkPlpBVLTh327S-I,16031
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+ pymetadata/core/annotation.py,sha256=V7MKEOtFptj8xD44Ls4ZkIi3_U6VDgl5Ep6j1oB5n98,16161
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  pymetadata/core/creator.py,sha256=0_z0HPhO2Tq8FnAED_4kuVzUiPfm_tYMiZSvyw73Aho,1307
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  pymetadata/core/synonym.py,sha256=-2_1ouSWAtQK5eZv2-p6CIJgYZX4xGKua-09ubBg5uo,155
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  pymetadata/core/xref.py,sha256=qlUfAb5wk4bOwPiUCEV0s9gIWVdWf5yup1W8UxR5uHY,1594
@@ -35,7 +35,7 @@ pymetadata/ontologies/ols.py,sha256=lKmhRMKuEx29QAZsxCRlzUwH48CGtl8YKM2AcsiDFVk,
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  pymetadata/ontologies/ontology.py,sha256=-3_AAq-HxRBOZReuLb3dj56HPPFUXsW22ULwaYQLIBc,9153
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  pymetadata/resources/ontologies/README.md,sha256=h1LIKpr42-s0RzwpCufkR_YJ2nWiwOapZX_frRXk3Qg,163
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  pymetadata/resources/templates/ontology_enum.pytemplate,sha256=nona0KbGoFumgJo2v_J-pcTniXveiTGb8bz-1rMoDR8,1672
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- pymetadata-0.5.5.dist-info/METADATA,sha256=AyBlcvFMDEGwUqE6lisWzbHPfU3TRI4I1gGBxRiSmuQ,4937
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- pymetadata-0.5.5.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- pymetadata-0.5.5.dist-info/licenses/LICENSE,sha256=4oZhYj-TN8e6NrD0wup4nJfQUH9zX0v3gz43xN6F2hs,1059
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- pymetadata-0.5.5.dist-info/RECORD,,
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+ pymetadata-0.5.6.dist-info/METADATA,sha256=CiATcW5E-Nvn8SC2p0brTWfXtNw-_uAYmfBus9ZwXa0,4419
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+ pymetadata-0.5.6.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ pymetadata-0.5.6.dist-info/licenses/LICENSE,sha256=4oZhYj-TN8e6NrD0wup4nJfQUH9zX0v3gz43xN6F2hs,1059
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+ pymetadata-0.5.6.dist-info/RECORD,,