pylibsparseir 0.1.0__cp313-cp313-macosx_15_0_arm64.whl → 0.6.0__cp313-cp313-macosx_15_0_arm64.whl

include/eigen3/unsupported/Eigen/src/Skyline/SkylineMatrix.h

@@ -0,0 +1,862 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2008-2009 Guillaume Saupin <guillaume.saupin@cea.fr>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_SKYLINEMATRIX_H
+#define EIGEN_SKYLINEMATRIX_H
+
+#include "SkylineStorage.h"
+#include "SkylineMatrixBase.h"
+
+namespace Eigen { 
+
+/** \ingroup Skyline_Module
+ *
+ * \class SkylineMatrix
+ *
+ * \brief The main skyline matrix class
+ *
+ * This class implements a skyline matrix using the very uncommon storage
+ * scheme.
+ *
+ * \param _Scalar the scalar type, i.e. the type of the coefficients
+ * \param _Options Union of bit flags controlling the storage scheme. Currently the only possibility
+ *                 is RowMajor. The default is 0 which means column-major.
+ *
+ *
+ */
+namespace internal {
+template<typename _Scalar, int _Options>
+struct traits<SkylineMatrix<_Scalar, _Options> > {
+    typedef _Scalar Scalar;
+    typedef Sparse StorageKind;
+
+    enum {
+        RowsAtCompileTime = Dynamic,
+        ColsAtCompileTime = Dynamic,
+        MaxRowsAtCompileTime = Dynamic,
+        MaxColsAtCompileTime = Dynamic,
+        Flags = SkylineBit | _Options,
+        CoeffReadCost = NumTraits<Scalar>::ReadCost,
+    };
+};
+}
+
+template<typename _Scalar, int _Options>
+class SkylineMatrix
+: public SkylineMatrixBase<SkylineMatrix<_Scalar, _Options> > {
+public:
+    EIGEN_SKYLINE_GENERIC_PUBLIC_INTERFACE(SkylineMatrix)
+    EIGEN_SKYLINE_INHERIT_ASSIGNMENT_OPERATOR(SkylineMatrix, +=)
+    EIGEN_SKYLINE_INHERIT_ASSIGNMENT_OPERATOR(SkylineMatrix, -=)
+
+    using Base::IsRowMajor;
+
+protected:
+
+    typedef SkylineMatrix<Scalar, (Flags&~RowMajorBit) | (IsRowMajor ? RowMajorBit : 0) > TransposedSkylineMatrix;
+
+    Index m_outerSize;
+    Index m_innerSize;
+
+public:
+    Index* m_colStartIndex;
+    Index* m_rowStartIndex;
+    SkylineStorage<Scalar> m_data;
+
+public:
+
+    inline Index rows() const {
+        return IsRowMajor ? m_outerSize : m_innerSize;
+    }
+
+    inline Index cols() const {
+        return IsRowMajor ? m_innerSize : m_outerSize;
+    }
+
+    inline Index innerSize() const {
+        return m_innerSize;
+    }
+
+    inline Index outerSize() const {
+        return m_outerSize;
+    }
+
+    inline Index upperNonZeros() const {
+        return m_data.upperSize();
+    }
+
+    inline Index lowerNonZeros() const {
+        return m_data.lowerSize();
+    }
+
+    inline Index upperNonZeros(Index j) const {
+        return m_colStartIndex[j + 1] - m_colStartIndex[j];
+    }
+
+    inline Index lowerNonZeros(Index j) const {
+        return m_rowStartIndex[j + 1] - m_rowStartIndex[j];
+    }
+
+    inline const Scalar* _diagPtr() const {
+        return &m_data.diag(0);
+    }
+
+    inline Scalar* _diagPtr() {
+        return &m_data.diag(0);
+    }
+
+    inline const Scalar* _upperPtr() const {
+        return &m_data.upper(0);
+    }
+
+    inline Scalar* _upperPtr() {
+        return &m_data.upper(0);
+    }
+
+    inline const Scalar* _lowerPtr() const {
+        return &m_data.lower(0);
+    }
+
+    inline Scalar* _lowerPtr() {
+        return &m_data.lower(0);
+    }
+
+    inline const Index* _upperProfilePtr() const {
+        return &m_data.upperProfile(0);
+    }
+
+    inline Index* _upperProfilePtr() {
+        return &m_data.upperProfile(0);
+    }
+
+    inline const Index* _lowerProfilePtr() const {
+        return &m_data.lowerProfile(0);
+    }
+
+    inline Index* _lowerProfilePtr() {
+        return &m_data.lowerProfile(0);
+    }
+
+    inline Scalar coeff(Index row, Index col) const {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+
+        if (outer == inner)
+            return this->m_data.diag(outer);
+
+        if (IsRowMajor) {
+            if (inner > outer) //upper matrix
+            {
+                const Index minOuterIndex = inner - m_data.upperProfile(inner);
+                if (outer >= minOuterIndex)
+                    return this->m_data.upper(m_colStartIndex[inner] + outer - (inner - m_data.upperProfile(inner)));
+                else
+                    return Scalar(0);
+            }
+            if (inner < outer) //lower matrix
+            {
+                const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+                if (inner >= minInnerIndex)
+                    return this->m_data.lower(m_rowStartIndex[outer] + inner - (outer - m_data.lowerProfile(outer)));
+                else
+                    return Scalar(0);
+            }
+            return m_data.upper(m_colStartIndex[inner] + outer - inner);
+        } else {
+            if (outer > inner) //upper matrix
+            {
+                const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+                if (outer <= maxOuterIndex)
+                    return this->m_data.upper(m_colStartIndex[inner] + (outer - inner));
+                else
+                    return Scalar(0);
+            }
+            if (outer < inner) //lower matrix
+            {
+                const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+
+                if (inner <= maxInnerIndex)
+                    return this->m_data.lower(m_rowStartIndex[outer] + (inner - outer));
+                else
+                    return Scalar(0);
+            }
+        }
+    }
+
+    inline Scalar& coeffRef(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+
+        if (outer == inner)
+            return this->m_data.diag(outer);
+
+        if (IsRowMajor) {
+            if (col > row) //upper matrix
+            {
+                const Index minOuterIndex = inner - m_data.upperProfile(inner);
+                eigen_assert(outer >= minOuterIndex && "You tried to access a coeff that does not exist in the storage");
+                return this->m_data.upper(m_colStartIndex[inner] + outer - (inner - m_data.upperProfile(inner)));
+            }
+            if (col < row) //lower matrix
+            {
+                const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+                eigen_assert(inner >= minInnerIndex && "You tried to access a coeff that does not exist in the storage");
+                return this->m_data.lower(m_rowStartIndex[outer] + inner - (outer - m_data.lowerProfile(outer)));
+            }
+        } else {
+            if (outer > inner) //upper matrix
+            {
+                const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+                eigen_assert(outer <= maxOuterIndex && "You tried to access a coeff that does not exist in the storage");
+                return this->m_data.upper(m_colStartIndex[inner] + (outer - inner));
+            }
+            if (outer < inner) //lower matrix
+            {
+                const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+                eigen_assert(inner <= maxInnerIndex && "You tried to access a coeff that does not exist in the storage");
+                return this->m_data.lower(m_rowStartIndex[outer] + (inner - outer));
+            }
+        }
+    }
+
+    inline Scalar coeffDiag(Index idx) const {
+        eigen_assert(idx < outerSize());
+        eigen_assert(idx < innerSize());
+        return this->m_data.diag(idx);
+    }
+
+    inline Scalar coeffLower(Index row, Index col) const {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+            if (inner >= minInnerIndex)
+                return this->m_data.lower(m_rowStartIndex[outer] + inner - (outer - m_data.lowerProfile(outer)));
+            else
+                return Scalar(0);
+
+        } else {
+            const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+            if (inner <= maxInnerIndex)
+                return this->m_data.lower(m_rowStartIndex[outer] + (inner - outer));
+            else
+                return Scalar(0);
+        }
+    }
+
+    inline Scalar coeffUpper(Index row, Index col) const {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minOuterIndex = inner - m_data.upperProfile(inner);
+            if (outer >= minOuterIndex)
+                return this->m_data.upper(m_colStartIndex[inner] + outer - (inner - m_data.upperProfile(inner)));
+            else
+                return Scalar(0);
+        } else {
+            const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+            if (outer <= maxOuterIndex)
+                return this->m_data.upper(m_colStartIndex[inner] + (outer - inner));
+            else
+                return Scalar(0);
+        }
+    }
+
+    inline Scalar& coeffRefDiag(Index idx) {
+        eigen_assert(idx < outerSize());
+        eigen_assert(idx < innerSize());
+        return this->m_data.diag(idx);
+    }
+
+    inline Scalar& coeffRefLower(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+            eigen_assert(inner >= minInnerIndex && "You tried to access a coeff that does not exist in the storage");
+            return this->m_data.lower(m_rowStartIndex[outer] + inner - (outer - m_data.lowerProfile(outer)));
+        } else {
+            const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+            eigen_assert(inner <= maxInnerIndex && "You tried to access a coeff that does not exist in the storage");
+            return this->m_data.lower(m_rowStartIndex[outer] + (inner - outer));
+        }
+    }
+
+    inline bool coeffExistLower(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+            return inner >= minInnerIndex;
+        } else {
+            const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+            return inner <= maxInnerIndex;
+        }
+    }
+
+    inline Scalar& coeffRefUpper(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minOuterIndex = inner - m_data.upperProfile(inner);
+            eigen_assert(outer >= minOuterIndex && "You tried to access a coeff that does not exist in the storage");
+            return this->m_data.upper(m_colStartIndex[inner] + outer - (inner - m_data.upperProfile(inner)));
+        } else {
+            const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+            eigen_assert(outer <= maxOuterIndex && "You tried to access a coeff that does not exist in the storage");
+            return this->m_data.upper(m_colStartIndex[inner] + (outer - inner));
+        }
+    }
+
+    inline bool coeffExistUpper(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+        eigen_assert(inner != outer);
+
+        if (IsRowMajor) {
+            const Index minOuterIndex = inner - m_data.upperProfile(inner);
+            return outer >= minOuterIndex;
+        } else {
+            const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+            return outer <= maxOuterIndex;
+        }
+    }
+
+
+protected:
+
+public:
+    class InnerUpperIterator;
+    class InnerLowerIterator;
+
+    class OuterUpperIterator;
+    class OuterLowerIterator;
+
+    /** Removes all non zeros */
+    inline void setZero() {
+        m_data.clear();
+        memset(m_colStartIndex, 0, (m_outerSize + 1) * sizeof (Index));
+        memset(m_rowStartIndex, 0, (m_outerSize + 1) * sizeof (Index));
+    }
+
+    /** \returns the number of non zero coefficients */
+    inline Index nonZeros() const {
+        return m_data.diagSize() + m_data.upperSize() + m_data.lowerSize();
+    }
+
+    /** Preallocates \a reserveSize non zeros */
+    inline void reserve(Index reserveSize, Index reserveUpperSize, Index reserveLowerSize) {
+        m_data.reserve(reserveSize, reserveUpperSize, reserveLowerSize);
+    }
+
+    /** \returns a reference to a novel non zero coefficient with coordinates \a row x \a col.
+
+     *
+     * \warning This function can be extremely slow if the non zero coefficients
+     * are not inserted in a coherent order.
+     *
+     * After an insertion session, you should call the finalize() function.
+     */
+    EIGEN_DONT_INLINE Scalar & insert(Index row, Index col) {
+        const Index outer = IsRowMajor ? row : col;
+        const Index inner = IsRowMajor ? col : row;
+
+        eigen_assert(outer < outerSize());
+        eigen_assert(inner < innerSize());
+
+        if (outer == inner)
+            return m_data.diag(col);
+
+        if (IsRowMajor) {
+            if (outer < inner) //upper matrix
+            {
+                Index minOuterIndex = 0;
+                minOuterIndex = inner - m_data.upperProfile(inner);
+
+                if (outer < minOuterIndex) //The value does not yet exist
+                {
+                    const Index previousProfile = m_data.upperProfile(inner);
+
+                    m_data.upperProfile(inner) = inner - outer;
+
+
+                    const Index bandIncrement = m_data.upperProfile(inner) - previousProfile;
+                    //shift data stored after this new one
+                    const Index stop = m_colStartIndex[cols()];
+                    const Index start = m_colStartIndex[inner];
+
+
+                    for (Index innerIdx = stop; innerIdx >= start; innerIdx--) {
+                        m_data.upper(innerIdx + bandIncrement) = m_data.upper(innerIdx);
+                    }
+
+                    for (Index innerIdx = cols(); innerIdx > inner; innerIdx--) {
+                        m_colStartIndex[innerIdx] += bandIncrement;
+                    }
+
+                    //zeros new data
+                    memset(this->_upperPtr() + start, 0, (bandIncrement - 1) * sizeof (Scalar));
+
+                    return m_data.upper(m_colStartIndex[inner]);
+                } else {
+                    return m_data.upper(m_colStartIndex[inner] + outer - (inner - m_data.upperProfile(inner)));
+                }
+            }
+
+            if (outer > inner) //lower matrix
+            {
+                const Index minInnerIndex = outer - m_data.lowerProfile(outer);
+                if (inner < minInnerIndex) //The value does not yet exist
+                {
+                    const Index previousProfile = m_data.lowerProfile(outer);
+                    m_data.lowerProfile(outer) = outer - inner;
+
+                    const Index bandIncrement = m_data.lowerProfile(outer) - previousProfile;
+                    //shift data stored after this new one
+                    const Index stop = m_rowStartIndex[rows()];
+                    const Index start = m_rowStartIndex[outer];
+
+
+                    for (Index innerIdx = stop; innerIdx >= start; innerIdx--) {
+                        m_data.lower(innerIdx + bandIncrement) = m_data.lower(innerIdx);
+                    }
+
+                    for (Index innerIdx = rows(); innerIdx > outer; innerIdx--) {
+                        m_rowStartIndex[innerIdx] += bandIncrement;
+                    }
+
+                    //zeros new data
+                    memset(this->_lowerPtr() + start, 0, (bandIncrement - 1) * sizeof (Scalar));
+                    return m_data.lower(m_rowStartIndex[outer]);
+                } else {
+                    return m_data.lower(m_rowStartIndex[outer] + inner - (outer - m_data.lowerProfile(outer)));
+                }
+            }
+        } else {
+            if (outer > inner) //upper matrix
+            {
+                const Index maxOuterIndex = inner + m_data.upperProfile(inner);
+                if (outer > maxOuterIndex) //The value does not yet exist
+                {
+                    const Index previousProfile = m_data.upperProfile(inner);
+                    m_data.upperProfile(inner) = outer - inner;
+
+                    const Index bandIncrement = m_data.upperProfile(inner) - previousProfile;
+                    //shift data stored after this new one
+                    const Index stop = m_rowStartIndex[rows()];
+                    const Index start = m_rowStartIndex[inner + 1];
+
+                    for (Index innerIdx = stop; innerIdx >= start; innerIdx--) {
+                        m_data.upper(innerIdx + bandIncrement) = m_data.upper(innerIdx);
+                    }
+
+                    for (Index innerIdx = inner + 1; innerIdx < outerSize() + 1; innerIdx++) {
+                        m_rowStartIndex[innerIdx] += bandIncrement;
+                    }
+                    memset(this->_upperPtr() + m_rowStartIndex[inner] + previousProfile + 1, 0, (bandIncrement - 1) * sizeof (Scalar));
+                    return m_data.upper(m_rowStartIndex[inner] + m_data.upperProfile(inner));
+                } else {
+                    return m_data.upper(m_rowStartIndex[inner] + (outer - inner));
+                }
+            }
+
+            if (outer < inner) //lower matrix
+            {
+                const Index maxInnerIndex = outer + m_data.lowerProfile(outer);
+                if (inner > maxInnerIndex) //The value does not yet exist
+                {
+                    const Index previousProfile = m_data.lowerProfile(outer);
+                    m_data.lowerProfile(outer) = inner - outer;
+
+                    const Index bandIncrement = m_data.lowerProfile(outer) - previousProfile;
+                    //shift data stored after this new one
+                    const Index stop = m_colStartIndex[cols()];
+                    const Index start = m_colStartIndex[outer + 1];
+
+                    for (Index innerIdx = stop; innerIdx >= start; innerIdx--) {
+                        m_data.lower(innerIdx + bandIncrement) = m_data.lower(innerIdx);
+                    }
+
+                    for (Index innerIdx = outer + 1; innerIdx < outerSize() + 1; innerIdx++) {
+                        m_colStartIndex[innerIdx] += bandIncrement;
+                    }
+                    memset(this->_lowerPtr() + m_colStartIndex[outer] + previousProfile + 1, 0, (bandIncrement - 1) * sizeof (Scalar));
+                    return m_data.lower(m_colStartIndex[outer] + m_data.lowerProfile(outer));
+                } else {
+                    return m_data.lower(m_colStartIndex[outer] + (inner - outer));
+                }
+            }
+        }
+    }
+
+    /** Must be called after inserting a set of non zero entries.
+     */
+    inline void finalize() {
+        if (IsRowMajor) {
+            if (rows() > cols())
+                m_data.resize(cols(), cols(), rows(), m_colStartIndex[cols()] + 1, m_rowStartIndex[rows()] + 1);
+            else
+                m_data.resize(rows(), cols(), rows(), m_colStartIndex[cols()] + 1, m_rowStartIndex[rows()] + 1);
+
+            //            eigen_assert(rows() == cols() && "memory reorganisatrion only works with suare matrix");
+            //
+            //            Scalar* newArray = new Scalar[m_colStartIndex[cols()] + 1 + m_rowStartIndex[rows()] + 1];
+            //            Index dataIdx = 0;
+            //            for (Index row = 0; row < rows(); row++) {
+            //
+            //                const Index nbLowerElts = m_rowStartIndex[row + 1] - m_rowStartIndex[row];
+            //                //                std::cout << "nbLowerElts" << nbLowerElts << std::endl;
+            //                memcpy(newArray + dataIdx, m_data.m_lower + m_rowStartIndex[row], nbLowerElts * sizeof (Scalar));
+            //                m_rowStartIndex[row] = dataIdx;
+            //                dataIdx += nbLowerElts;
+            //
+            //                const Index nbUpperElts = m_colStartIndex[row + 1] - m_colStartIndex[row];
+            //                memcpy(newArray + dataIdx, m_data.m_upper + m_colStartIndex[row], nbUpperElts * sizeof (Scalar));
+            //                m_colStartIndex[row] = dataIdx;
+            //                dataIdx += nbUpperElts;
+            //
+            //
+            //            }
+            //            //todo : don't access m_data profile directly : add an accessor from SkylineMatrix
+            //            m_rowStartIndex[rows()] = m_rowStartIndex[rows()-1] + m_data.lowerProfile(rows()-1);
+            //            m_colStartIndex[cols()] = m_colStartIndex[cols()-1] + m_data.upperProfile(cols()-1);
+            //
+            //            delete[] m_data.m_lower;
+            //            delete[] m_data.m_upper;
+            //
+            //            m_data.m_lower = newArray;
+            //            m_data.m_upper = newArray;
+        } else {
+            if (rows() > cols())
+                m_data.resize(cols(), rows(), cols(), m_rowStartIndex[cols()] + 1, m_colStartIndex[cols()] + 1);
+            else
+                m_data.resize(rows(), rows(), cols(), m_rowStartIndex[rows()] + 1, m_colStartIndex[rows()] + 1);
+        }
+    }
+
+    inline void squeeze() {
+        finalize();
+        m_data.squeeze();
+    }
+
+    void prune(Scalar reference, RealScalar epsilon = dummy_precision<RealScalar > ()) {
+        //TODO
+    }
+
+    /** Resizes the matrix to a \a rows x \a cols matrix and initializes it to zero
+     * \sa resizeNonZeros(Index), reserve(), setZero()
+     */
+    void resize(size_t rows, size_t cols) {
+        const Index diagSize = rows > cols ? cols : rows;
+        m_innerSize = IsRowMajor ? cols : rows;
+
+        eigen_assert(rows == cols && "Skyline matrix must be square matrix");
+
+        if (diagSize % 2) { // diagSize is odd
+            const Index k = (diagSize - 1) / 2;
+
+            m_data.resize(diagSize, IsRowMajor ? cols : rows, IsRowMajor ? rows : cols,
+                    2 * k * k + k + 1,
+                    2 * k * k + k + 1);
+
+        } else // diagSize is even
+        {
+            const Index k = diagSize / 2;
+            m_data.resize(diagSize, IsRowMajor ? cols : rows, IsRowMajor ? rows : cols,
+                    2 * k * k - k + 1,
+                    2 * k * k - k + 1);
+        }
+
+        if (m_colStartIndex && m_rowStartIndex) {
+            delete[] m_colStartIndex;
+            delete[] m_rowStartIndex;
+        }
+        m_colStartIndex = new Index [cols + 1];
+        m_rowStartIndex = new Index [rows + 1];
+        m_outerSize = diagSize;
+
+        m_data.reset();
+        m_data.clear();
+
+        m_outerSize = diagSize;
+        memset(m_colStartIndex, 0, (cols + 1) * sizeof (Index));
+        memset(m_rowStartIndex, 0, (rows + 1) * sizeof (Index));
+    }
+
+    void resizeNonZeros(Index size) {
+        m_data.resize(size);
+    }
+
+    inline SkylineMatrix()
+    : m_outerSize(-1), m_innerSize(0), m_colStartIndex(0), m_rowStartIndex(0) {
+        resize(0, 0);
+    }
+
+    inline SkylineMatrix(size_t rows, size_t cols)
+    : m_outerSize(0), m_innerSize(0), m_colStartIndex(0), m_rowStartIndex(0) {
+        resize(rows, cols);
+    }
+
+    template<typename OtherDerived>
+    inline SkylineMatrix(const SkylineMatrixBase<OtherDerived>& other)
+    : m_outerSize(0), m_innerSize(0), m_colStartIndex(0), m_rowStartIndex(0) {
+        *this = other.derived();
+    }
+
+    inline SkylineMatrix(const SkylineMatrix & other)
+    : Base(), m_outerSize(0), m_innerSize(0), m_colStartIndex(0), m_rowStartIndex(0) {
+        *this = other.derived();
+    }
+
+    inline void swap(SkylineMatrix & other) {
+        //EIGEN_DBG_SKYLINE(std::cout << "SkylineMatrix:: swap\n");
+        std::swap(m_colStartIndex, other.m_colStartIndex);
+        std::swap(m_rowStartIndex, other.m_rowStartIndex);
+        std::swap(m_innerSize, other.m_innerSize);
+        std::swap(m_outerSize, other.m_outerSize);
+        m_data.swap(other.m_data);
+    }
+
+    inline SkylineMatrix & operator=(const SkylineMatrix & other) {
+        std::cout << "SkylineMatrix& operator=(const SkylineMatrix& other)\n";
+        if (other.isRValue()) {
+            swap(other.const_cast_derived());
+        } else {
+            resize(other.rows(), other.cols());
+            memcpy(m_colStartIndex, other.m_colStartIndex, (m_outerSize + 1) * sizeof (Index));
+            memcpy(m_rowStartIndex, other.m_rowStartIndex, (m_outerSize + 1) * sizeof (Index));
+            m_data = other.m_data;
+        }
+        return *this;
+    }
+
+    template<typename OtherDerived>
+            inline SkylineMatrix & operator=(const SkylineMatrixBase<OtherDerived>& other) {
+        const bool needToTranspose = (Flags & RowMajorBit) != (OtherDerived::Flags & RowMajorBit);
+        if (needToTranspose) {
+            //         TODO
+            //            return *this;
+        } else {
+            // there is no special optimization
+            return SkylineMatrixBase<SkylineMatrix>::operator=(other.derived());
+        }
+    }
+
+    friend std::ostream & operator <<(std::ostream & s, const SkylineMatrix & m) {
+
+        EIGEN_DBG_SKYLINE(
+        std::cout << "upper elements : " << std::endl;
+        for (Index i = 0; i < m.m_data.upperSize(); i++)
+            std::cout << m.m_data.upper(i) << "\t";
+        std::cout << std::endl;
+        std::cout << "upper profile : " << std::endl;
+        for (Index i = 0; i < m.m_data.upperProfileSize(); i++)
+            std::cout << m.m_data.upperProfile(i) << "\t";
+        std::cout << std::endl;
+        std::cout << "lower startIdx : " << std::endl;
+        for (Index i = 0; i < m.m_data.upperProfileSize(); i++)
+            std::cout << (IsRowMajor ? m.m_colStartIndex[i] : m.m_rowStartIndex[i]) << "\t";
+        std::cout << std::endl;
+
+
+        std::cout << "lower elements : " << std::endl;
+        for (Index i = 0; i < m.m_data.lowerSize(); i++)
+            std::cout << m.m_data.lower(i) << "\t";
+        std::cout << std::endl;
+        std::cout << "lower profile : " << std::endl;
+        for (Index i = 0; i < m.m_data.lowerProfileSize(); i++)
+            std::cout << m.m_data.lowerProfile(i) << "\t";
+        std::cout << std::endl;
+        std::cout << "lower startIdx : " << std::endl;
+        for (Index i = 0; i < m.m_data.lowerProfileSize(); i++)
+            std::cout << (IsRowMajor ? m.m_rowStartIndex[i] : m.m_colStartIndex[i]) << "\t";
+        std::cout << std::endl;
+        );
+        for (Index rowIdx = 0; rowIdx < m.rows(); rowIdx++) {
+            for (Index colIdx = 0; colIdx < m.cols(); colIdx++) {
+                s << m.coeff(rowIdx, colIdx) << "\t";
+            }
+            s << std::endl;
+        }
+        return s;
+    }
+
+    /** Destructor */
+    inline ~SkylineMatrix() {
+        delete[] m_colStartIndex;
+        delete[] m_rowStartIndex;
+    }
+
+    /** Overloaded for performance */
+    Scalar sum() const;
+};
+
+template<typename Scalar, int _Options>
+class SkylineMatrix<Scalar, _Options>::InnerUpperIterator {
+public:
+
+    InnerUpperIterator(const SkylineMatrix& mat, Index outer)
+    : m_matrix(mat), m_outer(outer),
+    m_id(_Options == RowMajor ? mat.m_colStartIndex[outer] : mat.m_rowStartIndex[outer] + 1),
+    m_start(m_id),
+    m_end(_Options == RowMajor ? mat.m_colStartIndex[outer + 1] : mat.m_rowStartIndex[outer + 1] + 1) {
+    }
+
+    inline InnerUpperIterator & operator++() {
+        m_id++;
+        return *this;
+    }
+
+    inline InnerUpperIterator & operator+=(Index shift) {
+        m_id += shift;
+        return *this;
+    }
+
+    inline Scalar value() const {
+        return m_matrix.m_data.upper(m_id);
+    }
+
+    inline Scalar* valuePtr() {
+        return const_cast<Scalar*> (&(m_matrix.m_data.upper(m_id)));
+    }
+
+    inline Scalar& valueRef() {
+        return const_cast<Scalar&> (m_matrix.m_data.upper(m_id));
+    }
+
+    inline Index index() const {
+        return IsRowMajor ? m_outer - m_matrix.m_data.upperProfile(m_outer) + (m_id - m_start) :
+                m_outer + (m_id - m_start) + 1;
+    }
+
+    inline Index row() const {
+        return IsRowMajor ? index() : m_outer;
+    }
+
+    inline Index col() const {
+        return IsRowMajor ? m_outer : index();
+    }
+
+    inline size_t size() const {
+        return m_matrix.m_data.upperProfile(m_outer);
+    }
+
+    inline operator bool() const {
+        return (m_id < m_end) && (m_id >= m_start);
+    }
+
+protected:
+    const SkylineMatrix& m_matrix;
+    const Index m_outer;
+    Index m_id;
+    const Index m_start;
+    const Index m_end;
+};
+
+template<typename Scalar, int _Options>
+class SkylineMatrix<Scalar, _Options>::InnerLowerIterator {
+public:
+
+    InnerLowerIterator(const SkylineMatrix& mat, Index outer)
+    : m_matrix(mat),
+    m_outer(outer),
+    m_id(_Options == RowMajor ? mat.m_rowStartIndex[outer] : mat.m_colStartIndex[outer] + 1),
+    m_start(m_id),
+    m_end(_Options == RowMajor ? mat.m_rowStartIndex[outer + 1] : mat.m_colStartIndex[outer + 1] + 1) {
+    }
+
+    inline InnerLowerIterator & operator++() {
+        m_id++;
+        return *this;
+    }
+
+    inline InnerLowerIterator & operator+=(Index shift) {
+        m_id += shift;
+        return *this;
+    }
+
+    inline Scalar value() const {
+        return m_matrix.m_data.lower(m_id);
+    }
+
+    inline Scalar* valuePtr() {
+        return const_cast<Scalar*> (&(m_matrix.m_data.lower(m_id)));
+    }
+
+    inline Scalar& valueRef() {
+        return const_cast<Scalar&> (m_matrix.m_data.lower(m_id));
+    }
+
+    inline Index index() const {
+        return IsRowMajor ? m_outer - m_matrix.m_data.lowerProfile(m_outer) + (m_id - m_start) :
+                m_outer + (m_id - m_start) + 1;
+        ;
+    }
+
+    inline Index row() const {
+        return IsRowMajor ? m_outer : index();
+    }
+
+    inline Index col() const {
+        return IsRowMajor ? index() : m_outer;
+    }
+
+    inline size_t size() const {
+        return m_matrix.m_data.lowerProfile(m_outer);
+    }
+
+    inline operator bool() const {
+        return (m_id < m_end) && (m_id >= m_start);
+    }
+
+protected:
+    const SkylineMatrix& m_matrix;
+    const Index m_outer;
+    Index m_id;
+    const Index m_start;
+    const Index m_end;
+};
+
+} // end namespace Eigen
+
+#endif // EIGEN_SKYLINEMATRIX_H