pyheor 0.4.0__py3-none-any.whl

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Files changed (26) hide show
  1. pyheor/__init__.py +123 -0
  2. pyheor/analysis/__init__.py +26 -0
  3. pyheor/analysis/comparison.py +782 -0
  4. pyheor/analysis/results.py +1501 -0
  5. pyheor/distributions.py +411 -0
  6. pyheor/export/__init__.py +10 -0
  7. pyheor/export/excel.py +533 -0
  8. pyheor/export/excel_model.py +403 -0
  9. pyheor/export/report.py +279 -0
  10. pyheor/models/__init__.py +20 -0
  11. pyheor/models/common.py +355 -0
  12. pyheor/models/des.py +969 -0
  13. pyheor/models/markov.py +409 -0
  14. pyheor/models/microsim.py +652 -0
  15. pyheor/models/psm.py +480 -0
  16. pyheor/models/rewards.py +296 -0
  17. pyheor/plotting.py +1884 -0
  18. pyheor/survival.py +744 -0
  19. pyheor/survival_tools.py +83 -0
  20. pyheor/time.py +76 -0
  21. pyheor/utils.py +268 -0
  22. pyheor-0.4.0.dist-info/METADATA +210 -0
  23. pyheor-0.4.0.dist-info/RECORD +26 -0
  24. pyheor-0.4.0.dist-info/WHEEL +5 -0
  25. pyheor-0.4.0.dist-info/licenses/LICENSE +664 -0
  26. pyheor-0.4.0.dist-info/top_level.txt +1 -0
pyheor/__init__.py ADDED
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+ """PyHEOR: health economic models with explicit time and reward units."""
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+
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+ __version__ = "0.4.0"
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+ __author__ = "PyHEOR Team"
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+
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+ # Core sentinel
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+ from .utils import C
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+ from .time import Cycle, qaly, rescale_discount_rate
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+ from .survival_tools import from_flexsurv, rescale_survival, ScaledSurvival
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+ from .models.rewards import RewardContext
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+
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+ # Distributions
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+ from .distributions import (
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+ Distribution,
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+ Beta,
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+ Gamma,
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+ Normal,
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+ LogNormal,
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+ Uniform,
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+ Triangular,
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+ Dirichlet,
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+ Fixed,
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+ )
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+
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+ # Survival distributions
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+ from .survival import (
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+ SurvivalDistribution,
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+ Exponential,
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+ Weibull,
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+ LogLogistic,
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+ SurvLogNormal,
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+ Gompertz,
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+ GeneralizedGamma,
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+ ProportionalHazards,
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+ AcceleratedFailureTime,
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+ KaplanMeier,
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+ PiecewiseExponential,
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+ )
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+
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+ # Models
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+ from .models.common import Param
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+ from .models.markov import CohortStateTransitionModel, MarkovModel
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+ from .models.psm import PartitionedSurvivalModel, PSMModel
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+ from .models.microsim import (
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+ IndividualStateTransitionModel,
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+ MicroSimModel,
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+ PatientProfile,
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+ )
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+ from .models.des import DiscreteEventSimulationModel, DESModel
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+
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+ # Results
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+ from .analysis.results import (
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+ BaseResult, OWSAResult, PSAResult, PSMBaseResult,
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+ MicroSimResult, MicroSimPSAResult,
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+ DESResult, DESPSAResult,
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+ )
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+
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+ # Excel export
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+ from .export.excel import export_to_excel, export_comparison_excel
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+ from .export.excel_model import export_excel_model
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+
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+ # Report
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+ from .export.report import generate_report
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+
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+ # Comparison / CEA
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+ from .analysis.comparison import CEAnalysis, calculate_icers
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+
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+ __all__ = [
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+ "Cycle", "qaly", "rescale_discount_rate", "from_flexsurv",
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+ "rescale_survival", "ScaledSurvival", "RewardContext",
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+ # Sentinel
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+ "C",
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+ # Distributions
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+ "Distribution",
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+ "Beta",
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+ "Gamma",
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+ "Normal",
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+ "LogNormal",
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+ "Uniform",
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+ "Triangular",
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+ "Dirichlet",
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+ "Fixed",
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+ # Survival
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+ "SurvivalDistribution",
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+ "Exponential",
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+ "Weibull",
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+ "LogLogistic",
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+ "SurvLogNormal",
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+ "Gompertz",
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+ "GeneralizedGamma",
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+ "ProportionalHazards",
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+ "AcceleratedFailureTime",
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+ "KaplanMeier",
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+ "PiecewiseExponential",
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+ # Models
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+ "CohortStateTransitionModel",
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+ "PartitionedSurvivalModel",
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+ "IndividualStateTransitionModel",
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+ "DiscreteEventSimulationModel",
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+ "MarkovModel",
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+ "PSMModel",
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+ "MicroSimModel",
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+ "PatientProfile",
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+ "DESModel",
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+ "Param",
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+ # Results
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+ "BaseResult",
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+ "PSMBaseResult",
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+ "OWSAResult",
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+ "PSAResult",
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+ "MicroSimResult",
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+ "MicroSimPSAResult",
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+ "DESResult",
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+ "DESPSAResult",
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+ # Excel / Report
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+ "export_to_excel",
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+ "export_comparison_excel",
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+ "export_excel_model",
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+ "generate_report",
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+ # Comparison / CEA
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+ "CEAnalysis",
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+ "calculate_icers",
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+ ]
pyheor/analysis/__init__.py ADDED
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+ """Analysis, results, and cost-effectiveness evaluation."""
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+
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+ from .results import (
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+ BaseResult,
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+ OWSAResult,
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+ PSAResult,
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+ PSMBaseResult,
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+ MicroSimResult,
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+ MicroSimPSAResult,
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+ DESResult,
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+ DESPSAResult,
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+ )
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+ from .comparison import CEAnalysis, calculate_icers
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+
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+ __all__ = [
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+ "BaseResult",
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+ "OWSAResult",
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+ "PSAResult",
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+ "PSMBaseResult",
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+ "MicroSimResult",
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+ "MicroSimPSAResult",
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+ "DESResult",
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+ "DESPSAResult",
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+ "CEAnalysis",
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+ "calculate_icers",
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+ ]