pyg-nightly 2.7.0.dev20241106__py3-none-any.whl → 2.7.0.dev20241113__py3-none-any.whl

{pyg_nightly-2.7.0.dev20241106.dist-info → pyg_nightly-2.7.0.dev20241113.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pyg-nightly
-Version: 2.7.0.dev20241106
+Version: 2.7.0.dev20241113
 Summary: Graph Neural Network Library for PyTorch
 Keywords: deep-learning,pytorch,geometric-deep-learning,graph-neural-networks,graph-convolutional-networks
 Author-email: Matthias Fey <matthias@pyg.org>

{pyg_nightly-2.7.0.dev20241106.dist-info → pyg_nightly-2.7.0.dev20241113.dist-info}/RECORD

@@ -1,4 +1,4 @@
-torch_geometric/__init__.py,sha256=6BTs1HL6BtXSxNVFEMWCdtBeDNpd4GS-oL4PlHShLb0,1904
+torch_geometric/__init__.py,sha256=Mca3sSBlw54VQCuXnQZuuiaMSeoXOxn1Rvj2mKD91tc,1904
 torch_geometric/_compile.py,sha256=REjj1_qX8YBrva6iqr3AsNiDueTAy2BhLZkdezKL2MY,1322
 torch_geometric/_onnx.py,sha256=V9ffrIKSqhDw6xUZ12lkuSfNs48cQp2EeJ6Z19GfnVw,349
 torch_geometric/backend.py,sha256=lVaf7aLoVaB3M-UcByUJ1G4T4FOK6LXAg0CF4W3E8jo,1575
@@ -32,7 +32,7 @@ torch_geometric/contrib/transforms/__init__.py,sha256=lrGnWsEiJf5zsBRmshGZZFN_uY
 torch_geometric/data/__init__.py,sha256=OLkV82AGm6xMSynT_DHfRE6_INfPxLx4BQnY0-WVn54,4323
 torch_geometric/data/batch.py,sha256=C9cT7-rcWPgnG68Eb_uAcn90HS3OvOG6n4fY3ihpFhI,8764
 torch_geometric/data/collate.py,sha256=RRiUMBLxDAitaHx7zF0qiMR2nW1NY_0uaNdxlUo5-bo,12756
-torch_geometric/data/data.py,sha256=6HeA8tSMAcjWDsJqtRDMC0mmgnvvHCUDWfIusA7ObBA,43445
+torch_geometric/data/data.py,sha256=l_gHy18g9WtiSCm1mDinR4vGrZOLetogrw5wJEcn23E,43807
 torch_geometric/data/database.py,sha256=VTct1xyzXsK0GZahBV9-noviCzjRteAsKMG7VgJ52n0,22998
 torch_geometric/data/datapipes.py,sha256=9_Cq3j_7LIF4plQFzbLaqyy0LcpKdAic6yiKgMqSX9A,3083
 torch_geometric/data/dataset.py,sha256=TX2AM3OQkMLOx5Ie8IFtFFYuoA3AGeYwoT3ZqW56N7c,16768
@@ -517,7 +517,7 @@ torch_geometric/transforms/compose.py,sha256=P5AFGd6s9L-lpb8io1jKIm2LjAccp_6Q2Xo
 torch_geometric/transforms/constant.py,sha256=zDJbO1sEds1vjbRmgzSd-8D8gM4PtvWESuC-gX2qB9E,2005
 torch_geometric/transforms/delaunay.py,sha256=-7JIDKhjk8h1cFGVYiqRszwHFDf5dMzKOiB1ejUah_o,1273
 torch_geometric/transforms/distance.py,sha256=DvvI2vAYpxklnKCz3-4w2EXz7AYra0xBZ5m7MAL1tok,2360
-torch_geometric/transforms/face_to_edge.py,sha256=Gr0NwRtVwp51hkDJ2bQVkGbSs2k6ePrRiua3ZNt6-K8,1083
+torch_geometric/transforms/face_to_edge.py,sha256=ohAWtpiCs_qHwrrYmz2eLvAcd_bhfPsxkpHdFnAZkhk,2144
 torch_geometric/transforms/feature_propagation.py,sha256=GPiKiGU7OuOpBBJeATlCtAtBUy_DSHUoBnJdDK8T81E,3056
 torch_geometric/transforms/fixed_points.py,sha256=sfcqHZSw542LIYmq1DrTJdyncDRa2Uxf5N50G5lYSfQ,2426
 torch_geometric/transforms/gcn_norm.py,sha256=INi8f8J3i2OXWgX5U4GNKROpcvJNW42qO39EdLPRPS8,1397
@@ -578,7 +578,7 @@ torch_geometric/utils/_negative_sampling.py,sha256=u-7oDg8luSFto-iUqsq7eC9uek6yq
 torch_geometric/utils/_normalize_edge_index.py,sha256=H6DY-Dzi1Psr3igG_nb0U3ZPNZz-BBDntO2iuA8FtzA,1682
 torch_geometric/utils/_normalized_cut.py,sha256=uwVJkl-Q0tpY-w0nvcHajcQYcqFh1oDOf55XELdjJBU,1167
 torch_geometric/utils/_one_hot.py,sha256=vXC7l7zudYRZIwWv6mT-Biuk2zKELyqteJXLynPocPM,1404
-torch_geometric/utils/_scatter.py,sha256=yWayqkSPs5G5tsku2HPxJaHcqFRaSaam_L70Gb-7Uwg,14594
+torch_geometric/utils/_scatter.py,sha256=f8nSA_zZXO2YwKMnaGcx_Cz-11UdMxfck-hl0B6Mcng,14614
 torch_geometric/utils/_segment.py,sha256=CqS7_NMQihX89gEwFVHbyMEZgaEnSlJGpyuWqy3i8HI,1976
 torch_geometric/utils/_select.py,sha256=BZ5P6-1riR4xhCIJZnsNg5HmeAGelRzH42TpADj9xpQ,2439
 torch_geometric/utils/_softmax.py,sha256=6dTVbWX04laemRP-ZFPMS6ymRZtRa8zYF22QCXl_m4w,3242
@@ -616,8 +616,8 @@ torch_geometric/utils/smiles.py,sha256=4xTW56OWqvQcM5i2LEvsESAIvd2n0I17n9tvarHok
 torch_geometric/utils/sparse.py,sha256=uYd0oPrp5XN0c2Zc15f-00rhhVMfLnRMqNcqcmILNKQ,25519
 torch_geometric/utils/undirected.py,sha256=H_nfpI0_WluOG6VfjPyldvcjL4w5USAKWu2x5nUAUjw,6222
 torch_geometric/visualization/__init__.py,sha256=PyR_4K5SafsJrBr6qWrkjKr6GBL1b7FtZybyXCDEVwY,154
-torch_geometric/visualization/graph.py,sha256=AGKqbtTdL14w7xIhy6n3g4bpCOnujKt-pXHCNzovxB4,4784
+torch_geometric/visualization/graph.py,sha256=ZuLPL92yGRi7lxlqsUPwL_EVVXF7P2kMcveTtW79vpA,4784
 torch_geometric/visualization/influence.py,sha256=CWMvuNA_Nf1sfbJmQgn58yS4OFpeKXeZPe7kEuvkUBw,477
-pyg_nightly-2.7.0.dev20241106.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-pyg_nightly-2.7.0.dev20241106.dist-info/METADATA,sha256=6emzbwwXZTdHjvjAkbEBUPsLTNsHGXD3CwYP-7haFj4,62897
-pyg_nightly-2.7.0.dev20241106.dist-info/RECORD,,
+pyg_nightly-2.7.0.dev20241113.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+pyg_nightly-2.7.0.dev20241113.dist-info/METADATA,sha256=mfvaeek9VqMAvaZRS0W_IUhuyVk-eQA3q3Mylf0w1u0,62897
+pyg_nightly-2.7.0.dev20241113.dist-info/RECORD,,

torch_geometric/__init__.py

@@ -30,7 +30,7 @@ from .lazy_loader import LazyLoader
 contrib = LazyLoader('contrib', globals(), 'torch_geometric.contrib')
 graphgym = LazyLoader('graphgym', globals(), 'torch_geometric.graphgym')
 
-__version__ = '2.7.0.dev20241106'
+__version__ = '2.7.0.dev20241113'
 
 __all__ = [
     'Index',

torch_geometric/data/data.py

@@ -659,7 +659,13 @@ class Data(BaseData, FeatureStore, GraphStore):
                 return value.get_dim_size()
             return int(value.max()) + 1
         elif 'index' in key or key == 'face':
-            return self.num_nodes
+            num_nodes = self.num_nodes
+            if num_nodes is None:
+                raise RuntimeError(f"Unable to infer 'num_nodes' from the "
+                                   f"attribute '{key}'. Please explicitly set "
+                                   f"'num_nodes' as an attribute of 'data' to "
+                                   f"prevent this error")
+            return num_nodes
         else:
             return 0
 

torch_geometric/transforms/face_to_edge.py

@@ -8,8 +8,15 @@ from torch_geometric.utils import to_undirected
 
 @functional_transform('face_to_edge')
 class FaceToEdge(BaseTransform):
-    r"""Converts mesh faces :obj:`[3, num_faces]` to edge indices
-    :obj:`[2, num_edges]` (functional name: :obj:`face_to_edge`).
+    r"""Converts mesh faces of shape :obj:`[3, num_faces]` or
+    :obj:`[4, num_faces]` to edge indices of shape :obj:`[2, num_edges]`
+    (functional name: :obj:`face_to_edge`).
+
+    This transform supports both 2D triangular faces, represented by a
+    tensor of shape :obj:`[3, num_faces]`, and 3D tetrahedral mesh faces,
+    represented by a tensor of shape :obj:`[4, num_faces]`. It will convert
+    these faces into edge indices, where each edge is defined by the indices
+    of its two endpoints.
 
     Args:
         remove_faces (bool, optional): If set to :obj:`False`, the face tensor
@@ -22,7 +29,29 @@ class FaceToEdge(BaseTransform):
         if hasattr(data, 'face'):
             assert data.face is not None
             face = data.face
-            edge_index = torch.cat([face[:2], face[1:], face[::2]], dim=1)
+
+            if face.size(0) not in [3, 4]:
+                raise RuntimeError(f"Expected 'face' tensor with shape "
+                                   f"[3, num_faces] or [4, num_faces] "
+                                   f"(got {list(face.size())})")
+
+            if face.size()[0] == 3:
+                edge_index = torch.cat([
+                    face[:2],
+                    face[1:],
+                    face[::2],
+                ], dim=1)
+            else:
+                assert face.size()[0] == 4
+                edge_index = torch.cat([
+                    face[:2],
+                    face[1:3],
+                    face[2:4],
+                    face[::2],
+                    face[1::2],
+                    face[::3],
+                ], dim=1)
+
             edge_index = to_undirected(edge_index, num_nodes=data.num_nodes)
 
             data.edge_index = edge_index

torch_geometric/utils/_scatter.py

@@ -351,5 +351,5 @@ def group_cat(
     """
     assert len(tensors) == len(indices)
     index, perm = torch.cat(indices).sort(stable=True)
-    out = torch.cat(tensors, dim=0)[perm]
+    out = torch.cat(tensors, dim=dim).index_select(dim, perm)
     return (out, index) if return_index else out

torch_geometric/visualization/graph.py

@@ -132,7 +132,7 @@ def _visualize_graph_via_networkx(
             xy=pos[src],
             xytext=pos[dst],
             arrowprops=dict(
-                arrowstyle="->",
+                arrowstyle="<-",
                 alpha=data['alpha'],
                 shrinkA=sqrt(node_size) / 2.0,
                 shrinkB=sqrt(node_size) / 2.0,