pyfli-lib 0.1.3__py3-none-any.whl

pyfli/__init__.py

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+#### inside "pyfli.__init__.py"
+__version__ = "0.1.0"
+
+# Pulling everything from the scripts gatekeeper
+from .scripts import (DataOperations, IRFAligner, DataViewer, 
+                        AlliGprocessedImport, BHprocessedImport, PyFliprocessedImport, 
+                        HardSimulator, HardestSimulator, DatasetPlotter,
+                        PhasorAnalyzer, FLIFitter, PoissonLikelihoodFitter, FLIAnalysisSuite,
+                        Plotter, DLModelComparator, DataPreprocessing,
+                        BaseFLIFitter, Fli_CPUProcessor, Fli_GPUProcessor, MLEFLIFitter, 
+                        GlobalFLIFitter, ROIMaker, AnalyticalHelpers, DataIO_utils, Colorprocess)
+
+__all__ = ['DataOperations', 'IRFAligner', 'DataViewer', 
+        'AlliGprocessedImport', 'BHprocessedImport', 'PyFliprocessedImport', 
+        'HardSimulator', 'HardestSimulator', 'DatasetPlotter',
+        'PhasorAnalyzer', 'FLIFitter', 'PoissonLikelihoodFitter', 'FLIAnalysisSuite'
+        'Plotter', 'DLModelComparator', 'DataPreprocessing',
+        'MultiScaleRNNSummaryNet', 'BaseFLIFitter', 'Fli_CPUProcessor', 'Fli_GPUProcessor', 
+        'MLEFLIFitter', 'GlobalFLIFitter', 'ROIMaker', 'AnalyticalHelpers', 'DataIO_utils',
+        'Colorprocess'
+        ]
+

pyfli/scripts/__init__.py

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+#### inside "scripts.__init__.py"
+from .dataIO import (DataOperations, AlliGprocessedImport, 
+                        BHprocessedImport, PyFliprocessedImport, DatasetPlotter, DataIO_utils )
+from .analytical_methods import (PhasorAnalyzer, FLIFitter, PoissonLikelihoodFitter, FLIAnalysisSuite, AnalyticalHelpers)
+from .dataCC import IRFAligner, DataPreprocessing
+from .dataVnP import DataViewer, Plotter, DLModelComparator, Colorprocess
+from .roiMaker import ROIMaker
+from .solver import (BaseFLIFitter, Fli_CPUProcessor, Fli_GPUProcessor, MLEFLIFitter, GlobalFLIFitter)
+
+from .simulatorPhysics import HardSimulator, HardestSimulator
+# This allows: from pyfli.scripts import DataViewer
+__all__ = ["DataOperations", "IRFAligner", "DataViewer", "AlliGprocessedImport", 
+    "BHprocessedImport", "PyFliprocessedImport", "DatasetPlotter", "HardSimulator",
+    "HardestSimulator", "FLIFitter", "PoissonLikelihoodFitter", "FLIAnalysisSuite", 
+    "PhasorAnalyzer", "Plotter", "DLModelComparator", "DataPreprocessing",
+    "BaseFLIFitter", "Fli_CPUProcessor", "Fli_GPUProcessor", "MLEFLIFitter", "GlobalFLIFitter",
+    "ROIMaker", "AnalyticalHelpers", "DataIO_utils", "Colorprocess"
+]
+    

pyfli/scripts/analytical_methods/__init__.py

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+### inside analytical_methods
+from .phasor import PhasorAnalyzer
+from .nlsf import FLIFitter, PoissonLikelihoodFitter, FLIAnalysisSuite 
+from .am_utils import AnalyticalHelpers

pyfli/scripts/analytical_methods/am_utils.py

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+import numpy as np
+
+class AnalyticalHelpers:
+    def __init__(self, laser_period = 12.5, gate_delay=None, num_gate = None):
+        self.laser_period = laser_period
+        self.gate_delay = gate_delay
+        self.num_gate = num_gate
+
+    def freq_computation(self):
+        freq = 1000.0/self.laser_period # laser_period in ns; freq in Hz
+        if  self.gate_delay is None or self.num_gate is None:
+            effective_freq = freq
+        else:
+            effective_freq = 1000.0/(self.num_gate*self.gate_delay) # frequency is computed in the MHz if the gate delays are in ns
+        return [freq, effective_freq]

pyfli/scripts/analytical_methods/laguerre_deconvolution.py

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+import numpy as np
+import matplotlib.pyplot as plt