pyfebio 0.1.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyfebio/__init__.py +45 -0
- pyfebio/_types.py +95 -0
- pyfebio/boundary.py +119 -0
- pyfebio/constraints.py +41 -0
- pyfebio/contact.py +172 -0
- pyfebio/control.py +76 -0
- pyfebio/discrete.py +40 -0
- pyfebio/globals.py +12 -0
- pyfebio/include.py +5 -0
- pyfebio/initial.py +27 -0
- pyfebio/loaddata.py +51 -0
- pyfebio/loads.py +55 -0
- pyfebio/material.py +1191 -0
- pyfebio/mesh.py +354 -0
- pyfebio/meshadaptor.py +159 -0
- pyfebio/meshdata.py +52 -0
- pyfebio/meshdomains.py +65 -0
- pyfebio/model.py +145 -0
- pyfebio/module.py +14 -0
- pyfebio/output.py +298 -0
- pyfebio/py.typed +0 -0
- pyfebio/rigid.py +275 -0
- pyfebio/step.py +28 -0
- pyfebio-0.1.1.dist-info/METADATA +346 -0
- pyfebio-0.1.1.dist-info/RECORD +26 -0
- pyfebio-0.1.1.dist-info/WHEEL +4 -0
pyfebio/__init__.py
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from . import (
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boundary,
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constraints,
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contact,
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control,
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discrete,
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globals,
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include,
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initial,
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loaddata,
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loads,
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material,
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mesh,
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meshadaptor,
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meshdata,
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meshdomains,
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model,
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module,
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output,
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rigid,
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step,
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)
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__all__ = [
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"boundary",
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"constraints",
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"contact",
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"control",
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"discrete",
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"globals",
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"initial",
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"loaddata",
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"loads",
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"material",
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"mesh",
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"meshdata",
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"meshdomains",
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"meshadaptor",
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"model",
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"module",
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"output",
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"rigid",
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"step",
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"include",
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]
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pyfebio/_types.py
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from typing import Annotated
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from pydantic import StringConstraints
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StringFloatVec = Annotated[
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str,
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StringConstraints(
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strip_whitespace=True,
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pattern=r"^([+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?,)+([+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?)$",
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),
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]
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StringFloatVec2 = Annotated[
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str,
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StringConstraints(
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strip_whitespace=True,
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pattern=r"^" + ",".join([r"[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?"] * 2) + r"$",
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),
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]
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StringFloatVec3 = Annotated[
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str,
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StringConstraints(
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strip_whitespace=True,
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pattern=r"^" + ",".join([r"[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?"] * 3) + r"$",
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),
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]
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StringFloatVec9 = Annotated[
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str,
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StringConstraints(
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strip_whitespace=True,
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pattern=r"^" + ",".join([r"[+-]?(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?"] * 9) + r"$",
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),
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]
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StringUIntVec = Annotated[
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str,
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StringConstraints(
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strip_whitespace=True,
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pattern=r"^(?:\d+)(?:,(?:\d+))*$",
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),
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]
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StringUIntVec2 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 2) + r"$"),
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]
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StringUIntVec3 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 3) + r"$"),
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]
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StringUIntVec4 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 4) + r"$"),
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]
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StringUIntVec6 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 6) + r"$"),
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]
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StringUIntVec8 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 8) + r"$"),
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]
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StringUIntVec9 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 9) + r"$"),
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]
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StringUIntVec10 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 10) + r"$"),
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]
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StringUIntVec15 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 15) + r"$"),
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]
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StringUIntVec20 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 20) + r"$"),
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]
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StringUIntVec27 = Annotated[
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str,
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StringConstraints(strip_whitespace=True, pattern=r"^" + ",".join([r"\d+"] * 27) + r"$"),
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]
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pyfebio/boundary.py
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from typing import Literal
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from pydantic_xml import BaseXmlModel, attr, element
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from ._types import (
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StringFloatVec3,
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StringFloatVec9,
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)
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class Value(BaseXmlModel, validate_assignment=True):
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lc: int = attr()
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text: float | StringFloatVec3 = 1.0
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class BCZeroDisplacement(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["zero displacement"] = attr(default="zero displacement", frozen=True)
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node_set: str = attr()
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x_dof: Literal[0, 1] = element(default=0)
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y_dof: Literal[0, 1] = element(default=0)
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z_dof: Literal[0, 1] = element(default=0)
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class BCZeroShellDisplacement(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["zero shell displacement"] = attr(
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default="zero shell displacement", frozen=True
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)
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node_set: str = attr()
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sx_dof: Literal[0, 1] = element(default=0)
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sy_dof: Literal[0, 1] = element(default=0)
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sz_dof: Literal[0, 1] = element(default=0)
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class BCZeroFluidPressure(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["zero fluid pressure"] = attr(
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default="zero fluid pressure", frozen=True
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)
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node_set: str = attr()
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class BCPrescribedDisplacement(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["prescribed displacement"] = attr(
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default="prescribed displacement", frozen=True
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)
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node_set: str = attr()
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dof: Literal["x", "y", "z"] = element()
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value: Value = element()
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relative: Literal[0, 1] = element(default=0)
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class BCPrescribedShellDisplacement(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["prescribed shell displacement"] = attr(
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default="prescribed shell displacement", frozen=True
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)
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node_set: str = attr()
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dof: Literal["sx", "sy", "sz"] = element()
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value: Value = element()
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relative: Literal[0, 1] = element(default=0)
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class BCPrescribedFluidPressure(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["prescribed fluid pressure"] = attr(
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default="prescribed fluid pressure", frozen=True
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)
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node_set: str = attr()
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value: Value = element()
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relative: Literal[0, 1] = element(default=0)
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class BCPrescribedDeformation(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["prescribed deformation"] = attr(default="prescribed deformation")
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node_set: str = attr()
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scale: Value = element()
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F: StringFloatVec9 = element(default="1.0,0.0,0.0,0.0,1.0,0.0,0.0,0.0,1.0")
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relative: Literal[0, 1] = element(default=0)
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class BCRigid(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["rigid"] = attr(default="rigid", frozen=True)
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node_set: str = attr()
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rb: str = element()
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class BCRigidDeformation(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["rigid deformation"] = attr(default="rigid deformation", frozen=True)
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node_set: str = attr()
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pos: StringFloatVec3 = element(default="0.0,0.0,0.0")
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rot: Value = element()
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relative: Literal[0, 1] = element(default=0)
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class BCNormalDisplacement(BaseXmlModel, tag="bc", validate_assignment=True):
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type: Literal["normal displacement"] = attr(
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default="normal displacement", frozen=True
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)
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surface: str = attr()
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scale: Value = element()
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surface_hint: Literal[0, 1] = element(default=0)
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BoundaryConditionType = (
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BCZeroDisplacement
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| BCZeroShellDisplacement
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| BCZeroFluidPressure
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| BCPrescribedDisplacement
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| BCPrescribedShellDisplacement
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| BCPrescribedFluidPressure
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| BCPrescribedDeformation
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| BCRigid
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| BCRigidDeformation
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| BCNormalDisplacement
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)
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class Boundary(BaseXmlModel, tag="Boundary", validate_assignment=True):
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all_bcs: list[BoundaryConditionType] = element(default=[], tag="bc")
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def add_bc(self, new_bc: BoundaryConditionType):
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self.all_bcs.append(new_bc)
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pyfebio/constraints.py
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from typing import Literal, Union
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from pydantic_xml import BaseXmlModel, attr, element
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class ConstraintSymmetryPlane(BaseXmlModel, validate_assignment=True):
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type: Literal["symmetry plane"] = attr(default="symmetry plane", frozen=True)
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laugon: Literal[0, 1] = element(default=1)
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tol: float = element(default=0.1)
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penalty: float = element(default=1)
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rhs: float = element(default=0)
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minaug: int = element(default=0)
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maxaug: int = element(default=50)
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class ConstraintPrestrain(BaseXmlModel, validate_assignment=True):
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type: Literal["prestrain"] = attr(default="prestrain", frozen=True)
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update: Literal[0, 1] = element(default=1)
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tolerance: Literal[0] | float = element(default=0)
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min_iters: int = element(default=0)
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max_iters: int = element(default=-1)
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class ConstraintInSituStretch(BaseXmlModel, validate_assignment=True):
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type: Literal["in-situ stretch"] = attr(default="in-situ stretch", frozen=True)
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update: Literal[0, 1] = element(default=1)
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tolerance: Literal[0] | float = element(default=0)
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min_iters: int = element(default=0)
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max_iters: int = element(default=-1)
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max_stretch: Literal[0] | float = element(default=0)
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isochoric: Literal[0, 1] = element(default=1)
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ConstraintTypes = Union[ConstraintSymmetryPlane, ConstraintInSituStretch, ConstraintPrestrain]
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class Constraints(BaseXmlModel, tag="Constraints", validate_assignment=True):
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all_constraints: list[ConstraintTypes] = element(default=[], tag="constraint")
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def add_constraint(self, new_constraint: ConstraintTypes):
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self.all_constraints.append(new_constraint)
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pyfebio/contact.py
ADDED
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@@ -0,0 +1,172 @@
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1
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from typing import Literal
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2
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+
|
|
3
|
+
from pydantic_xml import BaseXmlModel, attr, element
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
class SlidingBase(BaseXmlModel, validate_assignment=True):
|
|
7
|
+
name: str | None = attr(default=None)
|
|
8
|
+
surface_pair: str = attr()
|
|
9
|
+
laugon: Literal["PENALTY", "AUGLAG"] = element(default="PENALTY")
|
|
10
|
+
two_pass: Literal[0, 1] = element(default=0)
|
|
11
|
+
penalty: float = element(default=1.0)
|
|
12
|
+
auto_penalty: Literal[0, 1] = element(default=0)
|
|
13
|
+
update_penalty: Literal[0, 1] = element(default=0)
|
|
14
|
+
tolerance: float = element(default=0.01)
|
|
15
|
+
gaptol: Literal[0] | float = element(default=0)
|
|
16
|
+
minaug: int = element(default=0)
|
|
17
|
+
maxaug: int = element(default=10)
|
|
18
|
+
search_tol: float = element(default=0.01)
|
|
19
|
+
search_radius: Literal[0] | float = element(default=0)
|
|
20
|
+
knmult: float = element(default=1.0)
|
|
21
|
+
seg_up: int = element(default=0)
|
|
22
|
+
node_reloc: Literal[0, 1] = element(default=0)
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
class SlidingElastic(SlidingBase):
|
|
26
|
+
type: Literal["sliding-elastic"] = attr(default="sliding-elastic")
|
|
27
|
+
symmetric_stiffness: Literal[0, 1] = element(default=1)
|
|
28
|
+
smooth_aug: int = element(default=0)
|
|
29
|
+
tension: Literal[0, 1] = element(default=0)
|
|
30
|
+
fric_coeff: Literal[0] | float = element(default=0)
|
|
31
|
+
flip_primary: Literal[0, 1] = element(default=0)
|
|
32
|
+
flip_secondary: Literal[0, 1] = element(default=0)
|
|
33
|
+
shell_bottom_primary: Literal[0, 1] = element(default=0)
|
|
34
|
+
shell_bottom_secondary: Literal[0, 1] = element(default=0)
|
|
35
|
+
search_radius: Literal[0] | float = element(default=1)
|
|
36
|
+
offset: Literal[0] | float = element(default=0)
|
|
37
|
+
|
|
38
|
+
|
|
39
|
+
class SlidingFacetOnFacet(SlidingBase):
|
|
40
|
+
type: Literal["sliding-facet-on-facet"] = attr(default="sliding-facet-on-facet")
|
|
41
|
+
smooth_aug: int = element(default=0)
|
|
42
|
+
|
|
43
|
+
|
|
44
|
+
class SlidingNodeOnFacet(SlidingBase):
|
|
45
|
+
type: Literal["sliding-node-on-facet"] = attr(default="sliding-node-on-facet")
|
|
46
|
+
fric_coeff: Literal[0] | float = element(default=0)
|
|
47
|
+
fric_penalty: Literal[0] | float = element(default=0)
|
|
48
|
+
ktmult: Literal[0] | float = element(default=0)
|
|
49
|
+
|
|
50
|
+
|
|
51
|
+
SlidingContactType = SlidingElastic | SlidingFacetOnFacet | SlidingNodeOnFacet
|
|
52
|
+
|
|
53
|
+
|
|
54
|
+
class ContactPotential(BaseXmlModel, validate_assignment=True):
|
|
55
|
+
type: Literal["contact potential"] = attr(default="contact potential", frozen=True)
|
|
56
|
+
name: str = attr()
|
|
57
|
+
surface_pair: str = attr()
|
|
58
|
+
kc: float = element(default=1e-6)
|
|
59
|
+
p: int = element(default=4)
|
|
60
|
+
R_in: float = element(default=0.01)
|
|
61
|
+
R_out: float = element(default=0.05)
|
|
62
|
+
|
|
63
|
+
|
|
64
|
+
class SlidingBiphasic(SlidingBase):
|
|
65
|
+
type: Literal["sliding-biphasic"] = attr(default="sliding-biphasic")
|
|
66
|
+
ptol: Literal[0] | float = element(default=0)
|
|
67
|
+
pressure_penalty: float = element(default=1)
|
|
68
|
+
symmetric_stiffness: Literal[0, 1] = element(default=1)
|
|
69
|
+
fric_coeff: Literal[0] | float = element(default=0)
|
|
70
|
+
contact_frac: float = element(default=0.0)
|
|
71
|
+
smooth_aug: int = element(default=0)
|
|
72
|
+
smooth_fls: int = element(default=0)
|
|
73
|
+
search_radius: Literal[0] | float = element(default=1)
|
|
74
|
+
flip_primary: Literal[0, 1] = element(default=0)
|
|
75
|
+
flip_secondary: Literal[0, 1] = element(default=0)
|
|
76
|
+
shell_bottom_primary: Literal[0, 1] = element(default=0)
|
|
77
|
+
shell_bottom_secondary: Literal[0, 1] = element(default=0)
|
|
78
|
+
|
|
79
|
+
|
|
80
|
+
class Sliding2(SlidingBase):
|
|
81
|
+
type: Literal["sliding2"] = attr(default="sliding2")
|
|
82
|
+
ptol: Literal[0] | float = element(default=0)
|
|
83
|
+
pressure_penalty: float = element(default=1)
|
|
84
|
+
symmetric_stiffness: Literal[0, 1] = element(default=1)
|
|
85
|
+
search_radius: Literal[0] | float = element(default=1)
|
|
86
|
+
smooth_aug: int = element(default=0)
|
|
87
|
+
dual_proj: Literal[0, 1] = element(default=1)
|
|
88
|
+
|
|
89
|
+
|
|
90
|
+
SlidingBiphasicContactType = SlidingBiphasic | Sliding2
|
|
91
|
+
|
|
92
|
+
|
|
93
|
+
class TiedBase(BaseXmlModel, validate_assignment=True):
|
|
94
|
+
name: str = attr()
|
|
95
|
+
surface_pair: str = attr()
|
|
96
|
+
laugon: Literal["PENALTY", "AUGLAG"] = element(default="PENALTY")
|
|
97
|
+
tolerance: float = element(default=0.1)
|
|
98
|
+
penalty: float = element(default=1)
|
|
99
|
+
knmult: float = element(default=1)
|
|
100
|
+
minaug: int = element(default=0)
|
|
101
|
+
maxaug: int = element(default=10)
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
class TiedElastic(TiedBase):
|
|
105
|
+
type: Literal["tied-elastic"] = attr(default="tied-elastic", frozen=True)
|
|
106
|
+
auto_penalty: Literal[0, 1] = element(default=0)
|
|
107
|
+
update_penalty: Literal[0, 1] = element(default=0)
|
|
108
|
+
two_pass: Literal[0, 1] = element(default=0)
|
|
109
|
+
search_tol: float = element(default=0.01)
|
|
110
|
+
search_radius: float = element(default=1)
|
|
111
|
+
gaptol: float = element(default=-1)
|
|
112
|
+
symmetric_stiffness: Literal[0, 1] = element(default=1)
|
|
113
|
+
|
|
114
|
+
|
|
115
|
+
class TiedFacetOnFacet(TiedBase):
|
|
116
|
+
type: Literal["tied-facet-on-facet"] = attr(
|
|
117
|
+
default="tied-facet-on-facet", frozen=True
|
|
118
|
+
)
|
|
119
|
+
tolerance: float = element(default=0.01)
|
|
120
|
+
search_tolerance: float = element(default=0.0001)
|
|
121
|
+
gap_offset: Literal[0, 1] = element(default=0)
|
|
122
|
+
|
|
123
|
+
|
|
124
|
+
class TiedNodeOnFacet(TiedBase):
|
|
125
|
+
type: Literal["tied-node-on-facet"] = attr(
|
|
126
|
+
default="tied-node-on-facet", frozen=True
|
|
127
|
+
)
|
|
128
|
+
tolerance: float = element(default=0.01)
|
|
129
|
+
search_tolerance: float = element(default=0.0001)
|
|
130
|
+
offset_shells: Literal[0, 1] = element(default=0)
|
|
131
|
+
max_distance: Literal[0] | float = element(deafult=0)
|
|
132
|
+
special: Literal[0, 1] = element(default=1)
|
|
133
|
+
node_reloc: Literal[0, 1] = element(default=0)
|
|
134
|
+
|
|
135
|
+
|
|
136
|
+
class TiedBiphasic(TiedBase):
|
|
137
|
+
type: Literal["tied-biphasic"] = attr(default="tied-biphasic", frozen=True)
|
|
138
|
+
gaptol: float = element(default=-1)
|
|
139
|
+
ptol: float = element(default=-1)
|
|
140
|
+
auto_penalty: Literal[0, 1] = element(default=0)
|
|
141
|
+
update_penalty: Literal[0, 1] = element(default=0)
|
|
142
|
+
two_pass: Literal[0, 1] = element(default=0)
|
|
143
|
+
search_tol: float = element(default=0.01)
|
|
144
|
+
search_radius: float = element(default=1)
|
|
145
|
+
knmult: float = element(default=1)
|
|
146
|
+
pressure_penalty: float = element(default=1)
|
|
147
|
+
symmetric_stiffness: Literal[0, 1] = element(default=1)
|
|
148
|
+
|
|
149
|
+
|
|
150
|
+
ContactType = (
|
|
151
|
+
SlidingElastic
|
|
152
|
+
| SlidingFacetOnFacet
|
|
153
|
+
| SlidingNodeOnFacet
|
|
154
|
+
| SlidingBiphasic
|
|
155
|
+
| Sliding2
|
|
156
|
+
| ContactPotential
|
|
157
|
+
| TiedElastic
|
|
158
|
+
| TiedFacetOnFacet
|
|
159
|
+
| TiedNodeOnFacet
|
|
160
|
+
| TiedBiphasic
|
|
161
|
+
)
|
|
162
|
+
|
|
163
|
+
|
|
164
|
+
class Contact(BaseXmlModel, tag="Contact", validate_assignment=True):
|
|
165
|
+
all_contact_interfaces: list[ContactType] = element(default=[], tag="contact")
|
|
166
|
+
|
|
167
|
+
def add_contact(self, new_contact: ContactType):
|
|
168
|
+
if new_contact.name is None:
|
|
169
|
+
new_contact.name = (
|
|
170
|
+
f"{new_contact.type}_{len(self.all_contact_interfaces) + 1}"
|
|
171
|
+
)
|
|
172
|
+
self.all_contact_interfaces.append(new_contact)
|
pyfebio/control.py
ADDED
|
@@ -0,0 +1,76 @@
|
|
|
1
|
+
from typing import Literal
|
|
2
|
+
|
|
3
|
+
from pydantic_xml import BaseXmlModel, attr, element
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
class TimeStepValue(BaseXmlModel, validate_assignment=True):
|
|
7
|
+
lc: int | None = attr(default=None)
|
|
8
|
+
text: float = 1.0
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
class TimeStepper(BaseXmlModel, validate_assignment=True):
|
|
12
|
+
type: Literal["default"] = attr(default="default", frozen=True)
|
|
13
|
+
max_retries: int = element(default=5, ge=0)
|
|
14
|
+
opt_iter: int = element(default=11, ge=0)
|
|
15
|
+
dtmin: float = element(default=0.0, ge=0.0)
|
|
16
|
+
dtmax: TimeStepValue = element(default=TimeStepValue())
|
|
17
|
+
aggressiveness: Literal[0, 1] = element(default=0)
|
|
18
|
+
cutback: float = element(default=0.5, ge=0.0, le=1.0)
|
|
19
|
+
dtforce: Literal[0, 1] = element(default=0)
|
|
20
|
+
|
|
21
|
+
|
|
22
|
+
class LinearSolver(BaseXmlModel, validate_assignment=True):
|
|
23
|
+
type: Literal["pardiso", "mkl_dss"] = attr(default="pardiso")
|
|
24
|
+
|
|
25
|
+
|
|
26
|
+
class QuasiNewtonMethod(BaseXmlModel, validate_assignment=True):
|
|
27
|
+
type: Literal["BFGS", "Broyden", "Full Newton", "JFNK", "Modified Newton"] = attr(default="BFGS")
|
|
28
|
+
max_ups: int = element(default=10, ge=0)
|
|
29
|
+
max_buffer_size: int = element(default=0, ge=0)
|
|
30
|
+
cycle_buffer: Literal[0, 1] = element(default=1)
|
|
31
|
+
cmax: float = element(default=1.0e5)
|
|
32
|
+
|
|
33
|
+
|
|
34
|
+
class Solver(BaseXmlModel, validate_assignment=True, skip_empty=True):
|
|
35
|
+
"""
|
|
36
|
+
Class for Non-Linear Solver settings. Currently, only supporting
|
|
37
|
+
"solid" and "biphasic" analyses, and direct linear solvers "pardiso"
|
|
38
|
+
and "mkl_dss".
|
|
39
|
+
|
|
40
|
+
More nuanced parameters can be added as needed.
|
|
41
|
+
"""
|
|
42
|
+
|
|
43
|
+
type: Literal["solid", "biphasic"] = attr(default="solid")
|
|
44
|
+
dtol: float = element(default=0.001, gt=0)
|
|
45
|
+
etol: float = element(default=0.01, ge=0)
|
|
46
|
+
rtol: float = element(default=0, ge=0)
|
|
47
|
+
ptol: float | None = element(default=None)
|
|
48
|
+
lstol: float = element(default=0.9, ge=0)
|
|
49
|
+
lsmin: float = element(default=0.01, gt=0)
|
|
50
|
+
lsiter: int = element(default=5, ge=0)
|
|
51
|
+
max_refs: int = element(default=15, ge=0)
|
|
52
|
+
diverge_reform: Literal[0, 1] = element(default=1)
|
|
53
|
+
min_residual: float = element(default=1e-20, gt=0.0)
|
|
54
|
+
qn_method: QuasiNewtonMethod = element(default=QuasiNewtonMethod())
|
|
55
|
+
symmetric_stiffness: Literal["symmetric", "non-symmetric", "symmetric-structure"] = element(default="non-symmetric")
|
|
56
|
+
equation_scheme: Literal["staggered", "block"] = element(default="staggered")
|
|
57
|
+
equation_order: Literal["default", "reverse", "febio2"] = element(default="default")
|
|
58
|
+
optimize_bw: Literal[0, 1] = element(default=0)
|
|
59
|
+
linear_solver: LinearSolver = element(default=LinearSolver())
|
|
60
|
+
|
|
61
|
+
|
|
62
|
+
class Control(BaseXmlModel, tag="Control", validate_assignment=True):
|
|
63
|
+
analysis: Literal["STATIC", "DYNAMIC", "STEADY-STATE", "TRANSIENT"] = element(default="STATIC")
|
|
64
|
+
time_steps: int = element(default=10)
|
|
65
|
+
step_size: float = element(default=0.1)
|
|
66
|
+
plot_zero_state: Literal[0, 1] = element(default=0)
|
|
67
|
+
plot_range: str = element(default="0,-1")
|
|
68
|
+
plot_level: Literal["PLOT_NEVER", "PLOT_MAJOR_ITRS", "PLOT_MINOR_ITRS", "PLOT_MUST_POINTS"] = element(default="PLOT_MAJOR_ITRS")
|
|
69
|
+
output_level: Literal["OUTPUT_NEVER", "OUTPUT_MAJOR_ITRS", "OUTPUT_MINOR_ITRS", "OUTPUT_MUST_POINTS", "OUTPUT_FINAL"] = element(
|
|
70
|
+
default="OUTPUT_MAJOR_ITRS"
|
|
71
|
+
)
|
|
72
|
+
plot_stride: int = element(default=1)
|
|
73
|
+
output_stride: int = element(default=1)
|
|
74
|
+
adaptor_re_solve: int = element(default=1)
|
|
75
|
+
time_stepper: TimeStepper | None = element(default=TimeStepper())
|
|
76
|
+
solver: Solver = element(default=Solver())
|
pyfebio/discrete.py
ADDED
|
@@ -0,0 +1,40 @@
|
|
|
1
|
+
from typing import Literal
|
|
2
|
+
|
|
3
|
+
from pydantic_xml import BaseXmlModel, attr, element
|
|
4
|
+
|
|
5
|
+
|
|
6
|
+
class Spring(BaseXmlModel, tag="discrete_material", validate_assignment=True):
|
|
7
|
+
id: int = attr()
|
|
8
|
+
name: str = attr()
|
|
9
|
+
type: str = attr(default="linear spring", frozen=True)
|
|
10
|
+
E: float = element(default=1.0)
|
|
11
|
+
|
|
12
|
+
|
|
13
|
+
class NonlinearSpringForce(BaseXmlModel, tag="force", validate_assignment=True):
|
|
14
|
+
type: Literal["math"] = attr(default="math", frozen=True)
|
|
15
|
+
math: str = element()
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
class NonlinearSpring(BaseXmlModel, tag="discrete_material", validate_assignment=True):
|
|
19
|
+
id: int = attr()
|
|
20
|
+
name: str = attr()
|
|
21
|
+
type: str = attr(default="nonlinear spring", frozen=True)
|
|
22
|
+
scale: float = element(default=1.0)
|
|
23
|
+
measure: Literal["strain"] = element(default="strain", frozen=True)
|
|
24
|
+
force: NonlinearSpringForce = element()
|
|
25
|
+
|
|
26
|
+
|
|
27
|
+
class DiscreteEntry(BaseXmlModel, tag="discrete", validate_assignment=True):
|
|
28
|
+
dmat: int = attr()
|
|
29
|
+
discrete_set: str = attr()
|
|
30
|
+
|
|
31
|
+
|
|
32
|
+
class Discrete(BaseXmlModel, validate_assignment=True):
|
|
33
|
+
discrete_materials: list[NonlinearSpring | Spring] = element(default=[])
|
|
34
|
+
discrete_elements: list[DiscreteEntry] = element(default=[])
|
|
35
|
+
|
|
36
|
+
def add_discrete_material(self, new_material: NonlinearSpring | Spring):
|
|
37
|
+
self.discrete_materials.append(new_material)
|
|
38
|
+
|
|
39
|
+
def add_discrete_element(self, new_element: DiscreteEntry):
|
|
40
|
+
self.discrete_elements.append(new_element)
|
pyfebio/globals.py
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
from pydantic_xml import BaseXmlModel, element
|
|
2
|
+
|
|
3
|
+
|
|
4
|
+
class Constants(BaseXmlModel, validate_assignment=True):
|
|
5
|
+
T: float = element(default=298)
|
|
6
|
+
P: float = element(default=0)
|
|
7
|
+
R: float = element(default=8.314e-6)
|
|
8
|
+
Fc: float = element(default=96485e-9)
|
|
9
|
+
|
|
10
|
+
|
|
11
|
+
class Globals(BaseXmlModel, validate_assignment=True):
|
|
12
|
+
constants: Constants = element(default=Constants(), tag="Constants")
|
pyfebio/include.py
ADDED
pyfebio/initial.py
ADDED
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
from typing import Literal
|
|
2
|
+
|
|
3
|
+
from pydantic_xml import BaseXmlModel, attr, element
|
|
4
|
+
|
|
5
|
+
from ._types import (
|
|
6
|
+
StringFloatVec3,
|
|
7
|
+
)
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class InitialVelocity(BaseXmlModel, validate_assignment=True):
|
|
11
|
+
type: Literal["velocity", "shell_velocity", "initial fluid velocity"] = attr()
|
|
12
|
+
node_set: str = attr()
|
|
13
|
+
value: StringFloatVec3 = element(default="0.0,0.0,0.0")
|
|
14
|
+
|
|
15
|
+
|
|
16
|
+
class InitialPrestrain(BaseXmlModel, validate_assignment=True):
|
|
17
|
+
type: Literal["prestrain"] = attr(default="prestrain", frozen=True)
|
|
18
|
+
node_set: str = attr()
|
|
19
|
+
init: Literal[0, 1] = element(default=1)
|
|
20
|
+
reset: Literal[0, 1] = element(default=1)
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
class Initial(BaseXmlModel, validate_assignment=True):
|
|
24
|
+
all_initial_conditions: list[InitialVelocity | InitialPrestrain] = element(default=[], tag="ic")
|
|
25
|
+
|
|
26
|
+
def add_initial_condition(self, new_initial_condition: InitialVelocity | InitialPrestrain):
|
|
27
|
+
self.all_initial_conditions.append(new_initial_condition)
|
pyfebio/loaddata.py
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
from typing import Literal
|
|
2
|
+
|
|
3
|
+
from pydantic_xml import BaseXmlModel, attr, element
|
|
4
|
+
|
|
5
|
+
from ._types import (
|
|
6
|
+
StringFloatVec2,
|
|
7
|
+
)
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class CurvePoints(BaseXmlModel, validate_assignment=True):
|
|
11
|
+
points: list[StringFloatVec2] = element(default=[], tag="pt")
|
|
12
|
+
|
|
13
|
+
def add_point(self, new_point: StringFloatVec2):
|
|
14
|
+
self.points.append(new_point)
|
|
15
|
+
|
|
16
|
+
|
|
17
|
+
class LoadCurve(BaseXmlModel, tag="load_controller", validate_assignment=True):
|
|
18
|
+
id: int = attr()
|
|
19
|
+
type: Literal["loadcurve"] = attr(default="loadcurve", frozen=True)
|
|
20
|
+
interpolate: Literal["LINEAR", "STEP", "SMOOTH"] = element(default="LINEAR")
|
|
21
|
+
extend: Literal["CONSTANT", "EXTRAPOLATE", "REPEAT", "REPEAT OFFSET"] = element(default="CONSTANT")
|
|
22
|
+
points: CurvePoints = element()
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
class PIDController(BaseXmlModel, validate_assignment=True):
|
|
26
|
+
id: int = attr()
|
|
27
|
+
type: Literal["PID"] = attr(default="PID", frozen=True)
|
|
28
|
+
var: str = element()
|
|
29
|
+
target: float = element()
|
|
30
|
+
Kp: float = element()
|
|
31
|
+
Kd: float = element()
|
|
32
|
+
Ki: float = element()
|
|
33
|
+
|
|
34
|
+
|
|
35
|
+
class MathController(BaseXmlModel, validate_assignment=True):
|
|
36
|
+
id: int = attr()
|
|
37
|
+
type: Literal["math"] = attr(default="math", frozen=True)
|
|
38
|
+
math: str = element()
|
|
39
|
+
|
|
40
|
+
|
|
41
|
+
class LoadData(BaseXmlModel, validate_assignment=True):
|
|
42
|
+
load_controllers: list[LoadCurve | PIDController | MathController] = element(default=[], tag="load_controller")
|
|
43
|
+
|
|
44
|
+
def add_load_curve(self, new_load_curve: LoadCurve):
|
|
45
|
+
self.load_controllers.append(new_load_curve)
|
|
46
|
+
|
|
47
|
+
def add_pid_controller(self, new_pid_controller: PIDController):
|
|
48
|
+
self.load_controllers.append(new_pid_controller)
|
|
49
|
+
|
|
50
|
+
def add_math_controller(self, new_math_controller: MathController):
|
|
51
|
+
self.load_controllers.append(new_math_controller)
|