pyfast 4.12.0__cp36-abi3-win_amd64.whl

fast/licenses/semaphore/Semaphore_LICENSE.txt

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+Copyright (c) 2015 Jeff Preshing
+
+This software is provided 'as-is', without any express or implied
+warranty. In no event will the authors be held liable for any damages
+arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose,
+including commercial applications, and to alter it and redistribute it
+freely, subject to the following restrictions:
+
+1. The origin of this software must not be misrepresented; you must not
+   claim that you wrote the original software. If you use this software
+   in a product, an acknowledgement in the product documentation would be
+   appreciated but is not required.
+2. Altered source versions must be plainly marked as such, and must not be
+   misrepresented as being the original software.
+3. This notice may not be removed or altered from any source distribution.

fast/licenses/tiff/COPYRIGHT

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+Copyright (c) 1988-1997 Sam Leffler
+Copyright (c) 1991-1997 Silicon Graphics, Inc.
+
+Permission to use, copy, modify, distribute, and sell this software and 
+its documentation for any purpose is hereby granted without fee, provided
+that (i) the above copyright notices and this permission notice appear in
+all copies of the software and related documentation, and (ii) the names of
+Sam Leffler and Silicon Graphics may not be used in any advertising or
+publicity relating to the software without the specific, prior written
+permission of Sam Leffler and Silicon Graphics.
+
+THE SOFTWARE IS PROVIDED "AS-IS" AND WITHOUT WARRANTY OF ANY KIND, 
+EXPRESS, IMPLIED OR OTHERWISE, INCLUDING WITHOUT LIMITATION, ANY 
+WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE.  
+
+IN NO EVENT SHALL SAM LEFFLER OR SILICON GRAPHICS BE LIABLE FOR
+ANY SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES OF ANY KIND,
+OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS,
+WHETHER OR NOT ADVISED OF THE POSSIBILITY OF DAMAGE, AND ON ANY THEORY OF 
+LIABILITY, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE 
+OF THIS SOFTWARE.

fast/licenses/uthash/LICENSE

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+Copyright (c) 2005-2021, Troy D. Hanson    http://troydhanson.github.com/uthash/
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+    * Redistributions of source code must retain the above copyright
+      notice, this list of conditions and the following disclaimer.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
+IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
+TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
+PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
+OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+

fast/licenses/zip/UNLICENSE

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+/*
+  This is free and unencumbered software released into the public domain.
+
+  Anyone is free to copy, modify, publish, use, compile, sell, or
+  distribute this software, either in source code form or as a compiled
+  binary, for any purpose, commercial or non-commercial, and by any
+  means.
+
+  In jurisdictions that recognize copyright laws, the author or authors
+  of this software dedicate any and all copyright interest in the
+  software to the public domain. We make this dedication for the benefit
+  of the public at large and to the detriment of our heirs and
+  successors. We intend this dedication to be an overt act of
+  relinquishment in perpetuity of all present and future rights to this
+  software under copyright law.
+
+  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+  EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+  MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+  IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
+  OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+  ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+  OTHER DEALINGS IN THE SOFTWARE.
+
+  For more information, please refer to <http://unlicense.org/>
+*/

fast/licenses/zlib/README

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+ZLIB DATA COMPRESSION LIBRARY
+
+zlib 1.2.9 is a general purpose data compression library.  All the code is
+thread safe.  The data format used by the zlib library is described by RFCs
+(Request for Comments) 1950 to 1952 in the files
+http://tools.ietf.org/html/rfc1950 (zlib format), rfc1951 (deflate format) and
+rfc1952 (gzip format).
+
+All functions of the compression library are documented in the file zlib.h
+(volunteer to write man pages welcome, contact zlib@gzip.org).  A usage example
+of the library is given in the file test/example.c which also tests that
+the library is working correctly.  Another example is given in the file
+test/minigzip.c.  The compression library itself is composed of all source
+files in the root directory.
+
+To compile all files and run the test program, follow the instructions given at
+the top of Makefile.in.  In short "./configure; make test", and if that goes
+well, "make install" should work for most flavors of Unix.  For Windows, use
+one of the special makefiles in win32/ or contrib/vstudio/ .  For VMS, use
+make_vms.com.
+
+Questions about zlib should be sent to <zlib@gzip.org>, or to Gilles Vollant
+<info@winimage.com> for the Windows DLL version.  The zlib home page is
+http://zlib.net/ .  Before reporting a problem, please check this site to
+verify that you have the latest version of zlib; otherwise get the latest
+version and check whether the problem still exists or not.
+
+PLEASE read the zlib FAQ http://zlib.net/zlib_faq.html before asking for help.
+
+Mark Nelson <markn@ieee.org> wrote an article about zlib for the Jan.  1997
+issue of Dr.  Dobb's Journal; a copy of the article is available at
+http://marknelson.us/1997/01/01/zlib-engine/ .
+
+The changes made in version 1.2.9 are documented in the file ChangeLog.
+
+Unsupported third party contributions are provided in directory contrib/ .
+
+zlib is available in Java using the java.util.zip package, documented at
+http://java.sun.com/developer/technicalArticles/Programming/compression/ .
+
+A Perl interface to zlib written by Paul Marquess <pmqs@cpan.org> is available
+at CPAN (Comprehensive Perl Archive Network) sites, including
+http://search.cpan.org/~pmqs/IO-Compress-Zlib/ .
+
+A Python interface to zlib written by A.M. Kuchling <amk@amk.ca> is
+available in Python 1.5 and later versions, see
+http://docs.python.org/library/zlib.html .
+
+zlib is built into tcl: http://wiki.tcl.tk/4610 .
+
+An experimental package to read and write files in .zip format, written on top
+of zlib by Gilles Vollant <info@winimage.com>, is available in the
+contrib/minizip directory of zlib.
+
+
+Notes for some targets:
+
+- For Windows DLL versions, please see win32/DLL_FAQ.txt
+
+- For 64-bit Irix, deflate.c must be compiled without any optimization. With
+  -O, one libpng test fails. The test works in 32 bit mode (with the -n32
+  compiler flag). The compiler bug has been reported to SGI.
+
+- zlib doesn't work with gcc 2.6.3 on a DEC 3000/300LX under OSF/1 2.1 it works
+  when compiled with cc.
+
+- On Digital Unix 4.0D (formely OSF/1) on AlphaServer, the cc option -std1 is
+  necessary to get gzprintf working correctly. This is done by configure.
+
+- zlib doesn't work on HP-UX 9.05 with some versions of /bin/cc. It works with
+  other compilers. Use "make test" to check your compiler.
+
+- gzdopen is not supported on RISCOS or BEOS.
+
+- For PalmOs, see http://palmzlib.sourceforge.net/
+
+
+Acknowledgments:
+
+  The deflate format used by zlib was defined by Phil Katz.  The deflate and
+  zlib specifications were written by L.  Peter Deutsch.  Thanks to all the
+  people who reported problems and suggested various improvements in zlib; they
+  are too numerous to cite here.
+
+Copyright notice:
+
+ (C) 1995-2016 Jean-loup Gailly and Mark Adler
+
+  This software is provided 'as-is', without any express or implied
+  warranty.  In no event will the authors be held liable for any damages
+  arising from the use of this software.
+
+  Permission is granted to anyone to use this software for any purpose,
+  including commercial applications, and to alter it and redistribute it
+  freely, subject to the following restrictions:
+
+  1. The origin of this software must not be misrepresented; you must not
+     claim that you wrote the original software. If you use this software
+     in a product, an acknowledgment in the product documentation would be
+     appreciated but is not required.
+  2. Altered source versions must be plainly marked as such, and must not be
+     misrepresented as being the original software.
+  3. This notice may not be removed or altered from any source distribution.
+
+  Jean-loup Gailly        Mark Adler
+  jloup@gzip.org          madler@alumni.caltech.edu
+
+If you use the zlib library in a product, we would appreciate *not* receiving
+lengthy legal documents to sign.  The sources are provided for free but without
+warranty of any kind.  The library has been entirely written by Jean-loup
+Gailly and Mark Adler; it does not include third-party code.
+
+If you redistribute modified sources, we would appreciate that you include in
+the file ChangeLog history information documenting your changes.  Please read
+the FAQ for more information on the distribution of modified source versions.

fast/licenses/zlib-ng/LICENSE.md

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+(C) 1995-2024 Jean-loup Gailly and Mark Adler
+
+This software is provided 'as-is', without any express or implied
+warranty. In no event will the authors be held liable for any damages
+arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose,
+including commercial applications, and to alter it and redistribute it
+freely, subject to the following restrictions:
+
+1. The origin of this software must not be misrepresented; you must not
+   claim that you wrote the original software. If you use this software
+   in a product, an acknowledgment in the product documentation would be
+   appreciated but is not required.
+
+2. Altered source versions must be plainly marked as such, and must not be
+   misrepresented as being the original software.
+
+3. This notice may not be removed or altered from any source distribution.

fast/pipelines/uff_viewer/colormap_and_reject.fpl

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+PipelineName "Colormap and reject"
+PipelineDescription "asd"
+
+### Processing chain
+
+ProcessObject enhance UltrasoundImageEnhancement
+Attribute reject 40
+Input 0 UFFstream 0
+
+### Renderers
+
+#Renderer renderer1 ImageRenderer
+#Input 0 UFFstream 0
+
+Renderer renderer2 ImageRenderer
+Input 0 enhance 0
+
+### Views
+
+#View view1 renderer1
+#Attribute 2Dmode true
+#Attribute background-color black
+
+View view2 renderer2
+Attribute 2Dmode true
+Attribute background-color black

fast/pipelines/uff_viewer/default.fpl

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+PipelineName "Default"
+PipelineDescription "Only render UFF data"
+
+Renderer renderer ImageRenderer
+Input 0 UFFstream 0
+
+View view renderer
+Attribute 2Dmode true
+Attribute background-color black

fast/pipelines/uff_viewer/non_local_means.fpl

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+PipelineName "Non Local Means Filtering"
+PipelineDescription "asd"
+
+### Processing chain
+
+ProcessObject filter NonLocalMeans
+Attribute smoothing 0.2
+Attribute search-size 11
+Attribute filter-size 3
+Attribute iterations 3
+Attribute preprocess false
+Input 0 UFFstream 0
+
+ProcessObject enhance UltrasoundImageEnhancement
+Attribute reject 40
+Input 0 filter 0
+
+### Renderers
+
+Renderer renderer1 ImageRenderer
+Input 0 UFFstream 0
+
+Renderer renderer2 ImageRenderer
+Input 0 enhance 0
+
+### Views
+
+View view1 renderer1
+Attribute 2Dmode true
+Attribute background-color black
+
+View view2 renderer2
+Attribute 2Dmode true
+Attribute background-color black

pyfast-4.12.0.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: pyfast
+Version: 4.12.0
+Summary: Python bindings of FAST - a framework for high performance medical image computing and visualization on heterogeneous systems utilizing multi-core CPUs and GPUs.
+Home-page: https://fast-imaging.github.io
+Author: Erik Smistad
+Author-email: erik.smistad@sintef.no
+License: BSD 2-clause (package include binary dependencies with other licenses, see licenses folder)
+Platform: UNKNOWN
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Programming Language :: C++
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Environment :: GPU
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Scientific/Engineering :: Image Processing
+Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Requires-Python: >=3
+Description-Content-Type: text/markdown
+
+![](https://github.com/smistad/FAST/wiki/images/fast_logo.png)
+
+[![GitHub Discussions](https://img.shields.io/github/discussions/smistad/FAST?label=GitHub%20discussions&logo=github)](https://github.com/smistad/FAST/discussions)
+[![Pip Downloads](https://img.shields.io/pypi/dm/pyfast?label=pip%20downloads&logo=python)](https://fast-imaging.github.io/download-stats.html)
+
+FAST is an open-source framework developed by researchers at the Norwegian University of Science and Technology (NTNU) and SINTEF. 
+The main goal of FAST is to make it easier to do high-performance processing, neural network inference, and visualization of medical images utilizing multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL, and neural network inference libraries such as TensorRT, OpenVINO, TensorFlow and ONNX Runtime.
+
+### Get started
+See installation instructions for [Windows](https://fast-imaging.github.io/install-windows.html), [Ubuntu Linux](https://fast-imaging.github.io/install-ubuntu-linux.html) and [macOS](https://fast-imaging.github.io/install-mac.html).
+
+To start using the framework, check out the [C++ tutorials](https://fast-imaging.github.io/cpp-tutorials.html) or the [Python tutorials](https://fast-imaging.github.io/python-tutorials.html).
+
+Learn best by example? Check out all the examples for [C++](https://fast-imaging.github.io/cpp-examples.html) and [Python](https://fast-imaging.github.io/python-examples.html).
+
+For more examples and documentation, go to [fast-imaging.github.io](https://fast-imaging.github.io).
+
+Need help? Post your questions on the [Discussions](https://github.com/smistad/FAST/discussions/new?category=q-a) page or use the [Gitter Chat](https://gitter.im/smistad/FAST).
+
+### Main features
+
+* **Data streaming** – Processing pipelines in FAST can handle both static and dynamic/temporal data without any change to the code. FAST can stream data from movie files, your webcamera, an Intel RealSense camera, a sequence of images and even directly from ultrasound scanners such as Clarius.
+* **Deep learning** – FAST provides a common interface for neural networks supporting different model formats (ONNX, protobuf, SavedModel, OpenVINO, UFF) and backends (Google TensorFlow, NVIDIA TensorRT, Intel OpenVINO, Microsoft ONNX Runtime), making it possible to create real-time neural network pipelines.
+* **High-level data management** – Data objects in FAST represent data, such as an image, on all processors. FAST keeps data coherent across the different storage areas thereby removing the burden of explicit memory handling from the developer.
+* **Wide data format support** - FAST supports several data formats (DICOM, metaimage (MHD), NIFTI, regular jpg/png/bmp images, videos, HDF5, VTK polydata, whole slide images, ultrasound file format) and data types (images 2D and 3D, grayscale and color, image pyramids, surface mesh, vertices, lines, text ++).
+* **High performance algorithms** – FAST has several high performance parallel OpenCL implementations of common algorithms, such as marching cubes surface extraction, Gaussian smoothing, non-local means, block matching tracking and seeded region growing.
+* **Fast concurrent visualization** – Rendering and computation are done in separate threads to ensure smooth responsive visualizations. Several types of visualizations are supported both 3D (mesh, point, line, image slice and volume rendering) and 2D (2D image, image slice and segmentation/label rendering, whole slide image (WSI) pyramids).
+* **Interoperability** – FAST can be used with Python and can also be easily integrated into existing Qt applications.
+
+### License
+
+The source code of FAST is licensed under the BSD 2-clause license, however the FAST binaries use and are linked with many third-party libraries which has a number of different open source licences (MIT, Apache 2.0, LGPL ++), see the licences folder in the release for more details.
+
+### Research
+
+FAST has been described in the following research articles. If you use this framework for research please cite them:
+
+*[FAST: framework for heterogeneous medical image computing and visualization](http://www.eriksmistad.no/wp-content/uploads/FAST_framework_for_heterogeneous_medical_image_computing_and_visualization.pdf)
+Erik Smistad, Mohammadmehdi Bozorgi, Frank Lindseth
+International Journal of Computer Assisted Radiology and Surgery 2015*
+
+*[High Performance Neural Network Inference, Streaming, and Visualization of Medical Images Using FAST](https://www.eriksmistad.no/wp-content/uploads/High-Performance-Neural-Network-Inference-Streaming-and-Visualization-of-Medical-Images-Using-FAST.pdf)
+Erik Smistad, Andreas Østvik, André Pedersen
+IEEE Access 2019*
+
+### Build
+
+To setup and build the framework, see the instructions for your operating system:
+* [Linux (Ubuntu)](https://fast-imaging.github.io/building-on-linux.html)
+* [Windows](https://fast-imaging.github.io/building-on-windows.html)
+* [macOS](https://fast-imaging.github.io/building-on-mac.html)
+
+
+![Surface mesh extracted from a large abdominal CT scan.](https://github.com/smistad/FAST/wiki/images/surface_extraction.png) ![Alpha blending ray casting rendering of a thorax CT image.](https://github.com/smistad/FAST/wiki/images/volume_renderer.jpg)
+
+![Ultrasound image segmentation using neural netwoks.](https://github.com/smistad/FAST/wiki/images/ultrasound_segmentation.jpg)  ![Whole slide microscopy image.](https://github.com/smistad/FAST/wiki/images/wsi.jpg)
+
+