pyegeria 5.4.0.14__py3-none-any.whl → 5.4.0.16__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (118) hide show
  1. commands/cat/.DS_Store +0 -0
  2. commands/cat/.env +8 -0
  3. commands/cat/debug_log +550 -0
  4. commands/cat/debug_log.log +0 -0
  5. commands/cat/list_format_set.py +10 -4
  6. commands/cat/logs/pyegeria.log +0 -0
  7. commands/cli/debug_log.log +0 -0
  8. commands/ops/load_archive.py +26 -22
  9. commands/ops/logs/pyegeria.log +0 -0
  10. md_processing/.DS_Store +0 -0
  11. md_processing/dr_egeria_inbox/Derive-Dr-Gov-Defs.md +8 -0
  12. md_processing/dr_egeria_inbox/Dr.Egeria Templates.md +873 -0
  13. md_processing/dr_egeria_inbox/arch_test.md +57 -0
  14. md_processing/dr_egeria_inbox/archive/dr_egeria_intro.md +254 -0
  15. md_processing/dr_egeria_inbox/archive/dr_egeria_intro_more_terms.md +696 -0
  16. md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part1.md +254 -0
  17. md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part2.md +298 -0
  18. md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part3.md +608 -0
  19. md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part4.md +94 -0
  20. md_processing/dr_egeria_inbox/archive/freddie_intro.md +284 -0
  21. md_processing/dr_egeria_inbox/archive/freddie_intro_orig.md +275 -0
  22. md_processing/dr_egeria_inbox/archive/test-term.md +110 -0
  23. md_processing/dr_egeria_inbox/cat_test.md +100 -0
  24. md_processing/dr_egeria_inbox/collections.md +39 -0
  25. md_processing/dr_egeria_inbox/data_designer_debug.log +6 -0
  26. md_processing/dr_egeria_inbox/data_designer_out.md +60 -0
  27. md_processing/dr_egeria_inbox/data_designer_search_test.md +11 -0
  28. md_processing/dr_egeria_inbox/data_field.md +54 -0
  29. md_processing/dr_egeria_inbox/data_spec.md +77 -0
  30. md_processing/dr_egeria_inbox/data_spec_test.md +2406 -0
  31. md_processing/dr_egeria_inbox/data_test.md +179 -0
  32. md_processing/dr_egeria_inbox/data_test2.md +429 -0
  33. md_processing/dr_egeria_inbox/data_test3.md +462 -0
  34. md_processing/dr_egeria_inbox/dr_egeria_data_designer_1.md +124 -0
  35. md_processing/dr_egeria_inbox/dr_egeria_intro_categories.md +168 -0
  36. md_processing/dr_egeria_inbox/dr_egeria_intro_part1.md +280 -0
  37. md_processing/dr_egeria_inbox/dr_egeria_intro_part2.md +313 -0
  38. md_processing/dr_egeria_inbox/dr_egeria_intro_part3.md +1073 -0
  39. md_processing/dr_egeria_inbox/dr_egeria_isc1.md +44 -0
  40. md_processing/dr_egeria_inbox/generated_help_report.md +9 -0
  41. md_processing/dr_egeria_inbox/glossary_list.md +5 -0
  42. md_processing/dr_egeria_inbox/glossary_search_test.md +40 -0
  43. md_processing/dr_egeria_inbox/glossary_test1.md +324 -0
  44. md_processing/dr_egeria_inbox/gov_def.md +424 -0
  45. md_processing/dr_egeria_inbox/gov_def2.md +447 -0
  46. md_processing/dr_egeria_inbox/product.md +50 -0
  47. md_processing/dr_egeria_inbox/rel.md +8 -0
  48. md_processing/dr_egeria_inbox/sb.md +119 -0
  49. md_processing/dr_egeria_inbox/solution-components.md +136 -0
  50. md_processing/dr_egeria_inbox/solution_blueprints.md +118 -0
  51. md_processing/dr_egeria_inbox/synonym_test.md +42 -0
  52. md_processing/dr_egeria_inbox/t2.md +268 -0
  53. md_processing/dr_egeria_outbox/.obsidian/app.json +1 -0
  54. md_processing/dr_egeria_outbox/.obsidian/appearance.json +1 -0
  55. md_processing/dr_egeria_outbox/.obsidian/community-plugins.json +6 -0
  56. md_processing/dr_egeria_outbox/.obsidian/core-plugins.json +31 -0
  57. md_processing/dr_egeria_outbox/.obsidian/plugins/calendar/data.json +10 -0
  58. md_processing/dr_egeria_outbox/.obsidian/plugins/calendar/main.js +4459 -0
  59. md_processing/dr_egeria_outbox/.obsidian/plugins/calendar/manifest.json +10 -0
  60. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-kanban/data.json +3 -0
  61. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-kanban/main.js +153 -0
  62. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-kanban/manifest.json +11 -0
  63. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-kanban/styles.css +1 -0
  64. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-tasks-plugin/main.js +500 -0
  65. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-tasks-plugin/manifest.json +12 -0
  66. md_processing/dr_egeria_outbox/.obsidian/plugins/obsidian-tasks-plugin/styles.css +1 -0
  67. md_processing/dr_egeria_outbox/.obsidian/plugins/templater-obsidian/main.js +37 -0
  68. md_processing/dr_egeria_outbox/.obsidian/plugins/templater-obsidian/manifest.json +11 -0
  69. md_processing/dr_egeria_outbox/.obsidian/plugins/templater-obsidian/styles.css +220 -0
  70. md_processing/dr_egeria_outbox/.obsidian/types.json +28 -0
  71. md_processing/dr_egeria_outbox/.obsidian/workspace.json +220 -0
  72. md_processing/dr_egeria_outbox/Untitled.canvas +1 -0
  73. md_processing/dr_egeria_outbox/friday/processed-2025-07-18 15:00-product.md +62 -0
  74. md_processing/dr_egeria_outbox/friday/processed-2025-07-18 15:13-product.md +62 -0
  75. md_processing/dr_egeria_outbox/friday/processed-2025-07-20 13:23-product.md +47 -0
  76. md_processing/dr_egeria_outbox/friday/processed-2025-08-01 11:55-data_test3.md +503 -0
  77. md_processing/dr_egeria_outbox/monday/processed-2025-07-14 12:38-data_designer_out.md +663 -0
  78. md_processing/dr_egeria_outbox/monday/processed-2025-07-21 10:52-generated_help_report.md +2744 -0
  79. md_processing/dr_egeria_outbox/monday/processed-2025-07-21 18:38-collections.md +62 -0
  80. md_processing/dr_egeria_outbox/monday/processed-2025-08-01 11:34-gov_def.md +444 -0
  81. md_processing/dr_egeria_outbox/processed-2025-08-03 16:05-glossary_list.md +37 -0
  82. md_processing/dr_egeria_outbox/sunday/processed-2025-07-20 14:55-product.md +77 -0
  83. md_processing/dr_egeria_outbox/sunday/processed-2025-07-20 15:05-product.md +75 -0
  84. md_processing/dr_egeria_outbox/sunday/processed-2025-07-20 15:11-product.md +74 -0
  85. md_processing/dr_egeria_outbox/sunday/processed-2025-07-20 20:40-collections.md +49 -0
  86. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 15:00-Derive-Dr-Gov-Defs.md +719 -0
  87. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 20:13-Derive-Dr-Gov-Defs.md +41 -0
  88. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 20:14-Derive-Dr-Gov-Defs.md +33 -0
  89. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 20:50-Derive-Dr-Gov-Defs.md +192 -0
  90. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 22:08-gov_def2.md +486 -0
  91. md_processing/dr_egeria_outbox/thursday/processed-2025-07-17 22:10-gov_def2.md +486 -0
  92. md_processing/dr_egeria_outbox/thursday/processed-2025-07-18 08:53-gov_def2.md +486 -0
  93. md_processing/dr_egeria_outbox/thursday/processed-2025-07-18 08:54-gov_def2.md +486 -0
  94. md_processing/dr_egeria_outbox/thursday/processed-2025-07-18 09:03-gov_def2.md +486 -0
  95. md_processing/dr_egeria_outbox/thursday/processed-2025-07-18 09:06-gov_def2.md +486 -0
  96. md_processing/dr_egeria_outbox/thursday/processed-2025-07-18 09:10-gov_def2.md +486 -0
  97. md_processing/dr_egeria_outbox/tuesday/processed-2025-07-16 19:15-gov_def2.md +527 -0
  98. md_processing/dr_egeria_outbox/tuesday/processed-2025-07-17 12:08-gov_def2.md +527 -0
  99. md_processing/dr_egeria_outbox/tuesday/processed-2025-07-17 14:27-gov_def2.md +485 -0
  100. md_processing/md_processing_utils/debug_log.log +0 -0
  101. md_processing/md_processing_utils/solution_architect_log.log +0 -0
  102. pyegeria/.DS_Store +0 -0
  103. pyegeria/_client_new.py +31 -1
  104. pyegeria/_output_format_models.py +373 -0
  105. pyegeria/_output_formats.py +501 -190
  106. pyegeria/collection_manager_omvs.py +1 -1
  107. pyegeria/glossary_browser_omvs.py +178 -65
  108. pyegeria/governance_officer_omvs.py +2 -2
  109. pyegeria/load_config.py +38 -13
  110. pyegeria/logging_configuration.py +2 -2
  111. {pyegeria-5.4.0.14.dist-info → pyegeria-5.4.0.16.dist-info}/METADATA +1 -1
  112. {pyegeria-5.4.0.14.dist-info → pyegeria-5.4.0.16.dist-info}/RECORD +115 -17
  113. md_processing/dr-egeria-outbox/DataStruct-2025-07-29-20-49-16.py +0 -8
  114. md_processing/dr-egeria-outbox/Mandy-DataStruct-2025-07-29-15-54-45.md +0 -19
  115. pyegeria/dr.egeria spec.md +0 -9
  116. {pyegeria-5.4.0.14.dist-info → pyegeria-5.4.0.16.dist-info}/LICENSE +0 -0
  117. {pyegeria-5.4.0.14.dist-info → pyegeria-5.4.0.16.dist-info}/WHEEL +0 -0
  118. {pyegeria-5.4.0.14.dist-info → pyegeria-5.4.0.16.dist-info}/entry_points.txt +0 -0
@@ -0,0 +1,503 @@
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+
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+
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+
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+ # Update Glossary
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+ ## Glossary Name
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+ Test Glossary
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+ ## Description
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+ This glossary is just for testing
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Term
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+ ## In Glossary
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+ Test Glossary
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+ ## Term Name
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+ Hospital Identifier
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+ ## Description
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+ Identifies each hospital uniquely. Used within the PatientId field.
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Create Data Dictionary
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+ ## Name
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+ Clinical Trial Data Dictionary
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+
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+ ## Description
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+ A data dictionary for clinical trial data elements.
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+
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+
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+ # Create Data Dictionary
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+ ## Name
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+ Pharma Data Dictionary
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+
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+ ## Description
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+ A data dictionary of elements relevant to the Pharma communities.
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+
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+
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+ ___
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+
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+ # Update Data Spec
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+
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+ ## Data Specification
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+
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+ Data Specification for the Teddy Bear Drop Clinical Trial
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+
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+ ## Description
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+ Principle data requirements for Teddy Bear Drop Clinical Trial. Meow
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+
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+ ## Qualified Name
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+ DataSpec::Data Specification for the Teddy Bear Drop Clinical Trial
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+
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+ ## Classifications
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+
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+ ## Guid
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+
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+ # Create Data Specification
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+
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+ ## Data Specification Name
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+
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+ Test Spec2
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+
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+ ## Description
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+ A test spec - Meow
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+
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+ ## Qualified Name
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+
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+ ## Classifications
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+
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+ ## Guid
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+
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+ ## Additional Properties
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+ {
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+ "a prop" : "meow",
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+ "another" : "woof"
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+ }
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+ ___
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+
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+ # Create Data Dictionary
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+
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+ ## Dictionary Name
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+
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+ dw
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+
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+ ## Description
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+ A data dictionary for dan..meow
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+ ## Qualified Name
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+ DataDict::dw
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+
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+ ## Classifications
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+
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+ ## GUID
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+
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+
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+ ___
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+
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+
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+ # Update Data Structure
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+
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+ ## Data Structure Name
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+
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+ TBDF-Incoming Weekly Measurement Data
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+
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+ ## Description
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+ This describes the weekly measurement data for each patient for the Teddy Bear dropt clinical trial.
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+
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+ ## Qualified Name
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+ DataStruct::TBDF-Incoming Weekly Measurement Data
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+
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+ ## Namespace
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+
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+ ## In Data Specification
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+ Data Specification for the Teddy Bear Drop Clinical Trial
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+
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+ ## Version Identifier
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+
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+
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+ ## Guid
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Data Structure
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+
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+ ## Data Structure Name
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+
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+ WWT-Incoming Weekly Measurement Data
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+
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+ ## Description
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+ A collection of data fields that form a data structure.
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+
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+ ## Qualified Name
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+ DataStruct::WWT-Incoming Weekly Measurement Data
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+
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+ ## In Data Specification
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+ Test Spec2
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+
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+ ## Namespace
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+
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+
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+ ## Version Identifier
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+
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+
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+ ## GUID
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+
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Data Field
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+
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+ ## Data Field Name
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+
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+ PatientId
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+
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+ ## Description
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+ Unique identifier of the patient
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+
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+ ## Qualified Name
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+ DataField::PatientId
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+
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+
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+ ## Data Type
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+
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+ String
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+
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+ ## Guid
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+
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+ ## Data Class
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary, Pharma Data Dictionary
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+
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+ ## In Data Structure
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+ TBDF-Incoming Weekly Measurement Data
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+ DataStruct::WWT-Incoming Weekly Measurement Data
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+
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+ ## Glossary Term
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+ GlossaryTerm::ClinicalTrialTerminology::PatientId
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+ ___
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+
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+ ___
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+
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+
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+
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+
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+ # Update Data Field
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+
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+ ## Data Field Name
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+
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+ HospitalId
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+
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+ ## Description
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+ Unique identifier for a hospital. Used in forming PatientId.
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+
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+ ## Qualified Name
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+ DataField::HospitalId
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+
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+ ## Data Type
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+ String
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+ ## In Data Structure
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+
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+ DataStruct::TBDF-Incoming Weekly Measurement Data
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+ DataStruct::WWT-Incoming Weekly Measurement Data
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+
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+ ## Position
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+ 1
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## Glossary Term
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+ Term::Hospital Identifier
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+
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+ ## Parent Data Field
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+ DataField::PatientId
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+
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+ ## Journal Entry
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+ Just creating this term
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Data Field
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+
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+ ## Data Field Name
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+
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+ PatientSN
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+
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+ ## Description
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+ Unique identifier of the patient within a hospital.
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+
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+ ## Qualified Name
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+ DataField::PatientSN
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+
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+
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+ ## Data Type
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+
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+ String
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+ ## Position
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+ 2
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+ ## In Data Structure
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+ DataStruct::TBDF-Incoming Weekly Measurement Data
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+ DataStruct::WWT-Incoming Weekly Measurement Data
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+
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+ ## Parent Data Field
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+ DataField::PatientId
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+
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+ ## Journal Entry
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+ Just creating this term
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Data Class
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+
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+ ## Data Class Name
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+
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+ Date
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+
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+ ## Description
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+ A date of the form YYYY-MM-DD
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+
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+ ## Qualified Name
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+ DataClass::Date
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+
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+ ## Data Type
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+ date
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+ ## Position
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+ 0
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+
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+ ## Containing Data Class
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+
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+ ## Specializes Data Class
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+
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+ ## Journal Entry
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+ Just creating this date
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+
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+ # Update Data Class
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+
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+ ## Data Class Name
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+
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+ ISO-Date
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+
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+ ## Description
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+ ISO 8601 standard date. A date of the form YYYY-MM-DD
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+
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+ ## Qualified Name
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+ DataClass::ISO-Date
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+
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+ ## Data Type
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+ date
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+ ## Position
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+ 0
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+
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+ ## Containing Data Class
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+
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+ ## Specializes Data Class
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+ DataClass::Date
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+ ## Journal Entry
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+ Just creating this date
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+
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+ # Update Data Field
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+
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+ ## Data Field
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+
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+ Date
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+
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+ ## Description
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+ A date of the form YYYY-MM-DD
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+
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+ ## Qualified Name
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+ DataField::Date
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+
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+
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+ ## Data Type
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+ date
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+
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+ ## Position
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+ 0
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+ ## In Data Structure
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+ TBDF-Incoming Weekly Measurement Data,
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+ DataStruct::WWT-Incoming Weekly Measurement Data
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+
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+ ## Parent Data Field
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+
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+ ## Data Class
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+ DataClass::ISO-Date
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+
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+ ## Journal Entry
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+ Just creating this date
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+
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+
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+ ___
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+
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+ ___
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+
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+
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+
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+
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+ # Update Data Class
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+
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+ ## Data Class Name
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+
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+ Address
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+
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+ ## Description
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+ Address Class
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+
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+ ## Qualified Name
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+
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+ ## Data Type
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+
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+ String
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+ ## Position
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+ 0
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+
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+ ## Containing Data Class
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+
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+ ## Specializes Data Class
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+
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+ ## Journal Entry
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+ Just creating this date
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+
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+
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+
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+
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+ ___
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+
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+ # Update Data Class
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+
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+ ## Data Class Name
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+
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+ Street Address
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+
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+ ## Description
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+ Street Address including number and name of street.
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+
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+ ## Qualified Name
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+
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+
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+
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+ ## Data Type
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+
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+ String
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+ ## Position
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+ 0
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+
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+ ## Min Cardinality
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+ 0
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+
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+ ## Max Cardinality
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+ 1
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+
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+ ## In Data Dictionary
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+ DataDict::Clinical Trial Data Dictionary
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+
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+
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+ ## Containing Data Class
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+ DataClass::Address
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+ ## Specializes Data Class
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+
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+
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+ ___
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+
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+ # Provenance
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+
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+ * Results from processing file data_test3.md on 2025-08-01 11:55