pyegeria 5.3.9.9.7__py3-none-any.whl → 5.4.0.dev2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- commands/cat/debug_log.2025-06-05_20-24-18_123924.log.zip +0 -0
- commands/cat/debug_log.2025-06-10_08-45-03_929921.log.zip +0 -0
- commands/cat/debug_log.2025-06-11_09-57-21_247890.log.zip +0 -0
- commands/cat/debug_log.2025-06-12_16-14-31_212042.log.zip +0 -0
- commands/cat/dr_egeria_md.py +32 -5
- commands/cat/list_collections.py +10 -4
- commands/cat/list_data_designer.py +171 -0
- md_processing/__init__.py +7 -2
- md_processing/data/commands.json +4666 -848
- md_processing/md_commands/data_designer_commands.py +840 -557
- md_processing/md_commands/solution_architect_commands.py +985 -0
- md_processing/md_processing_utils/common_md_proc_utils.py +262 -89
- md_processing/md_processing_utils/common_md_utils.py +11 -4
- md_processing/md_processing_utils/md_processing_constants.py +18 -16
- pyegeria/_client.py +39 -0
- pyegeria/classification_manager_omvs.py +1 -1
- pyegeria/collection_manager_omvs.py +248 -188
- pyegeria/data_designer_omvs.py +217 -9
- pyegeria/governance_officer_omvs.py +2349 -0
- pyegeria/output_formatter.py +24 -12
- pyegeria/solution_architect_omvs.py +4219 -1084
- pyegeria/utils.py +15 -2
- {pyegeria-5.3.9.9.7.dist-info → pyegeria-5.4.0.dev2.dist-info}/METADATA +2 -1
- {pyegeria-5.3.9.9.7.dist-info → pyegeria-5.4.0.dev2.dist-info}/RECORD +27 -62
- {pyegeria-5.3.9.9.7.dist-info → pyegeria-5.4.0.dev2.dist-info}/entry_points.txt +3 -0
- commands/cat/.DS_Store +0 -0
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro.md +0 -254
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro_more_terms.md +0 -696
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part1.md +0 -254
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part2.md +0 -298
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part3.md +0 -608
- md_processing/dr_egeria_inbox/archive/dr_egeria_intro_part4.md +0 -94
- md_processing/dr_egeria_inbox/archive/freddie_intro.md +0 -284
- md_processing/dr_egeria_inbox/archive/freddie_intro_orig.md +0 -275
- md_processing/dr_egeria_inbox/archive/test-term.md +0 -110
- md_processing/dr_egeria_inbox/cat_test.md +0 -100
- md_processing/dr_egeria_inbox/data_field.md +0 -54
- md_processing/dr_egeria_inbox/data_spec.md +0 -77
- md_processing/dr_egeria_inbox/data_spec_test.md +0 -2406
- md_processing/dr_egeria_inbox/data_test.md +0 -86
- md_processing/dr_egeria_inbox/dr_egeria_intro_categories.md +0 -168
- md_processing/dr_egeria_inbox/dr_egeria_intro_part1.md +0 -280
- md_processing/dr_egeria_inbox/dr_egeria_intro_part2.md +0 -313
- md_processing/dr_egeria_inbox/dr_egeria_intro_part3.md +0 -1073
- md_processing/dr_egeria_inbox/dr_egeria_isc1.md +0 -44
- md_processing/dr_egeria_inbox/glossary_test1.md +0 -324
- md_processing/dr_egeria_inbox/rel.md +0 -8
- md_processing/dr_egeria_inbox/sb.md +0 -119
- md_processing/dr_egeria_inbox/search_test.md +0 -39
- md_processing/dr_egeria_inbox/solution-components.md +0 -154
- md_processing/dr_egeria_inbox/solution_blueprints.md +0 -118
- md_processing/dr_egeria_inbox/synonym_test.md +0 -42
- md_processing/dr_egeria_inbox/t1.md +0 -0
- md_processing/dr_egeria_inbox/t2.md +0 -268
- md_processing/dr_egeria_outbox/processed-2025-05-15 19:52-data_test.md +0 -94
- md_processing/dr_egeria_outbox/processed-2025-05-16 07:39-data_test.md +0 -88
- md_processing/dr_egeria_outbox/processed-2025-05-17 16:01-data_field.md +0 -56
- md_processing/dr_egeria_outbox/processed-2025-05-18 15:51-data_test.md +0 -103
- md_processing/dr_egeria_outbox/processed-2025-05-18 16:47-data_test.md +0 -94
- md_processing/dr_egeria_outbox/processed-2025-05-19 07:14-data_test.md +0 -96
- md_processing/dr_egeria_outbox/processed-2025-05-19 07:20-data_test.md +0 -100
- md_processing/dr_egeria_outbox/processed-2025-05-19 07:22-data_test.md +0 -88
- md_processing/dr_egeria_outbox/processed-2025-05-19 09:26-data_test.md +0 -91
- md_processing/dr_egeria_outbox/processed-2025-05-19 10:27-data_test.md +0 -91
- md_processing/dr_egeria_outbox/processed-2025-05-19 14:04-data_test.md +0 -91
- md_processing/md_commands/blueprint_commands.py +0 -303
- pyegeria/.DS_Store +0 -0
- {pyegeria-5.3.9.9.7.dist-info → pyegeria-5.4.0.dev2.dist-info}/LICENSE +0 -0
- {pyegeria-5.3.9.9.7.dist-info → pyegeria-5.4.0.dev2.dist-info}/WHEEL +0 -0
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<!-- SPDX-License-Identifier: CC-BY-4.0 -->
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<!-- Copyright Contributors to the Egeria project. -->
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# Rules
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* If this is a create, and qualfied name is provided, it will be used.
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* If this is an update, and qualified name is provided, it is an error if it doesn't match.
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* If this is an update and no qualified name provided, will try to use the display name
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* If this is an update and qualified name and guid provided, then the qualified name can be changed
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* Name of the entity is either display_name or "{element_type} Name"
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# Create Solution Blueprint
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## Display Name
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Clinical Trial Management Solution Blueprint
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## Description
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A description of how a clinical trial is managed in Coco Pharmaceuticals.
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## Version Identifier
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V1.2
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## Qualified Name
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SolutionBlueprint:Clinical Trial Management Solution Blueprint:V1.2
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## <guid>
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---
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# Update Solution Component
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## Display Name
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Hospital Processes
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## Description
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## Version Identifier
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## Solution Component Type
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## Planned Deployed Implementation Type
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String - valid value?
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## Solution Blueprints
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Clinical Trial Management Solution Blueprint
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## Parent Components
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---
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# Create Solution Component
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## Display Name
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Lab Processes
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## Description
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## Version Identifier
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## Solution Component Type
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## Planned Deployed Implementation Type
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String - valid value?
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## Solution Blueprints
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SolutionBlueprint:Clinical Trial Management Solution Blueprint:V1.2
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## Parent Components
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# Create Solution Role
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## Name
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## Scope
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str - valid values
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# Create Solution Actor Role
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## Solution Component
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SolutionComponent:XXX q_name <required>
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## Actor
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Actor:XXX -q_name <required>
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## Role
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# Create Solution Linking Role
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## Starting Solution Component
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## Information Supply Chain Segment GUIDs
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# Create Term
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## In Glossary
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Egeria-Markdown
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## Term Name
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List Categories
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## Description
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Lists the categories across all glossaries.
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# Create Term
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## In Glossary
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## Term Name
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## Description
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Lists the categories across all glossaries.
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# Create Term-Term Relationship
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## Term 1 Name
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List Categories
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## Term Relationship
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Synonym
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# Demonstrating updates and additions
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This document was derived from the processing of the file dr_egeria_intro.md; All of the Dr.Egeria statements have been
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preserved (including the generated attributes such as the unique GUIDs) and the explanatory text has been replaced.
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In this document we will add glossary categories, update existing terms to categorize them, and add some new terms that
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further explain dr.egeria. This document is being written off-line (actually on a plane) - demonstrating one of the
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intriguing features of dr.egeria - because its just text, it can be edited anywhere and anytime that there is a text
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editor. Dr.Egeria files can be emailed, sent via text message, slack or maintained in a `git` repository.
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It's just text with markdown annotations.
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Ok, let's get started. First, we have the `Update Glossary` command below. There is nothing new we need to add at this
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point so we can just leave it as-is. When this document is processed it will apply updates but if there are none,
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It doesn't matter.
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# Update Glossary
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## Glossary Name
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## Description
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notation and through post-processing
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commands, validates the Egeria content and allows the requests to be sent to Egeria.
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## Language
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## Usage
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1. (optional) load an example or template for the type of object from Egeria.
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2. Create a new document (perhaps from a template) and edit it, adding in the content with the Dr.Egeria controlled Markdown language.
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3. Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.
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4. Submit the document to Egeria using the Dr.Egeria commands.
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## Qualified Name
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## Guid
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Ok, now let's create a couple of glossary categories. They will be:
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* **Writing Dr.Egeria Markdown** - where we describe elements of the Dr.Egeria language as terms within the category.
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Glossary categories have the following attributes:
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| Attribute Name | Input Required? | Generated/Default? | Unique? | Notes |
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| Category Name | Yes | No | No | A display name (informal name). |
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| Owning Glossary | Yes | No | Yes | This is the qualified name of the glossary that owns this category. |
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| Description | No | No | No | A textual description of this category |
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| Qualified Name | No | Yes | Yes | The qualified name can either be provided by the user or generated. If generated, a pattern is followed. |
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* Local-Qualifier is an optional string that can be useful to both disambiguate similar names and to add some local context. Local qualifiers could be set to organization names, functions, business context, etc. The settings for a local qualifier is set either by setting the environment variable `EGERIA_LOCAL_QUALIFIER` or by passing in a parameter when executing one of the Dr.Egeria enabled commands. This could also be set for a team by an Egeria administrator.
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| Term Name | Yes | No | No | A display name (informal name). |
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| Owning Glossary | Yes | No | Yes | This is the qualified name of the glossary that owns this term. |
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## Summary
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## In Glossary
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## Description
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provides
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## Examples
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Create Glossary or
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Update Glossary or
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Commands are used in the Freddie Egeria markdown language.
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# Update Term
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## Summary
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Source of the markdown content.
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## In Glossary
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Glossary::Egeria-Markdown
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Category:Processing-Dr.Egeria-Markdown
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Source of the markdown content - could be jupyter or plain markdown file.
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## Term Name
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Directive
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## Summary
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A directive defines how the command is to be processed.
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## Status
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DRAFT
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Directives are one of:
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* review?
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## Examples
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## Usage
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None
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## Published Version
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0.2
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Term:Directive
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## Guid
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# Provenance
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* t2.md Derived from processing file dr_egeria_intro_part2.md on 2025-03-20 15:06
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Data Specification for the Teddy Bear Drop Foot Clinical Trial
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# foo Update Data Specification
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## Data Specification
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Data Specification for the Teddy Bear Drop Foot Clinical Trial
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>woof
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## Description
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>Meow -
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Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
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# Fpp Create Data Dictionary
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## Name
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Clinical Trial Data Dictionary
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## Description
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A data dictionary for clinical trial data elements.
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___
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TBDF-Incoming Weekly Measurement Data
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# Update Data Structure Form - created at 2025-05-15 19:52
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Data Structure found from the search string: `<class 'filter'>`
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# Update Data Structure
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## Data Structure Name
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TBDF-Incoming Weekly Measurement Data
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## Description
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This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
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## Qualified Name
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DataStruct::TBDF-Incoming Weekly Measurement Data
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## Namespace
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## Version Identifier
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## Guid
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d71c7ee2-b414-4c8f-bf9b-b16bd3601855
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WWT-Incoming Weekly Measurement Data
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# Foo Update Data Structure
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## Qualified Name
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DataStruct::WWT-Incoming Weekly Measurement Data
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## GUID
|
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ae221834-a3a6-4f32-ac94-110dff761b49
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|
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## Data Structure
|
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|
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WWT-Incoming Weekly Measurement Data
|
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|
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|
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## Description
|
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A collection of data fields that form a data structure.
|
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|
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## In Data Specification
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## Qualified Name
|
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# Provenance
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* Results from processing file data_test.md on 2025-05-15 19:52
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Data Specification for the Teddy Bear Drop Foot Clinical Trial
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# foo Update Data Specification
|
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|
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|
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|
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## Data Specification
|
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|
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|
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|
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Data Specification for the Teddy Bear Drop Foot Clinical Trial
|
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|
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>woof
|
16
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## Description
|
17
|
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>Meow -
|
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|
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|
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|
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Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
|
20
|
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|
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|
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|
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|
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|
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# Fpp Create Data Dictionary
|
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|
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## Name
|
26
|
-
Clinical Trial Data Dictionary
|
27
|
-
|
28
|
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## Description
|
29
|
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A data dictionary for clinical trial data elements.
|
30
|
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|
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___
|
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|
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|
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|
38
|
-
TBDF-Incoming Weekly Measurement Data
|
39
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|
40
|
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# Update Data Structure
|
41
|
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|
42
|
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## GUID
|
43
|
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d71c7ee2-b414-4c8f-bf9b-b16bd3601855
|
44
|
-
|
45
|
-
## Data Structure
|
46
|
-
|
47
|
-
TBDF-Incoming Weekly Measurement Data
|
48
|
-
|
49
|
-
## Description
|
50
|
-
This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
|
51
|
-
|
52
|
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## In Data Specification
|
53
|
-
Data Specification for the Teddy Bear Drop Foot Clinical Trial
|
54
|
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|
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|
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|
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|
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## Qualified Name
|
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|
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|
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|
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|
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___
|
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|
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|
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WWT-Incoming Weekly Measurement Data
|
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|
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|
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# Foo Update Data Structure
|
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|
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|
65
|
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## Qualified Name
|
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|
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DataStruct::WWT-Incoming Weekly Measurement Data
|
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|
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## GUID
|
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|
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ae221834-a3a6-4f32-ac94-110dff761b49
|
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|
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|
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|
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## Data Structure
|
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|
-
|
73
|
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WWT-Incoming Weekly Measurement Data
|
74
|
-
|
75
|
-
|
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|
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## Description
|
77
|
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A collection of data fields that form a data structure.
|
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|
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|
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|
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|
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|
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## In Data Specification
|
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## Qualified Name
|
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# Provenance
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* Results from processing file data_test.md on 2025-05-16 07:39
|
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# Update Collection
|
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## Collection Name
|
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|
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|
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## Description
|
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|
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Angle rotation of the left leg from vertical
|
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|
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|
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|
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## Qualified Name
|
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|
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DataField::AngleLeftField
|
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|
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|
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## Classifications
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|
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## Collection Type
|
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|
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|
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|
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|
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## Guid
|
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8aa5bef9-3a20-4160-a579-6e63b4db7f67
|
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# Update Collection
|
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## Collection Name
|
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|
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|
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|
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|
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|
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## Description
|
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|
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Unique identifier of the patient
|
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|
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|
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## Qualified Name
|
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|
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DataField::PatientId
|
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|
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|
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|
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## Classifications
|
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|
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|
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## Collection Type
|
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|
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|
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|
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|
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## Guid
|
45
|
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a698b362-a781-41c6-9e6e-bde6fe3a1737
|
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|
-
|
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|
-
|
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|
-
|
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|
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## In Data Dictionary
|
50
|
-
|
51
|
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None
|
52
|
-
|
53
|
-
|
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|
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# Provenance
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|
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* Results from processing file data_field.md on 2025-05-17 16:01
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