pyegeria 5.3.6.2.5__py3-none-any.whl → 5.3.6.4__py3-none-any.whl

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Files changed (33) hide show
  1. pyegeria/__init__.py +3 -0
  2. pyegeria/_client.py +10 -0
  3. pyegeria/commands/cat/{freddie_jupyter.py → dr_egeria_jupyter.py} +8 -16
  4. pyegeria/commands/cat/{freddie_md.py → dr_egeria_md.py} +39 -33
  5. pyegeria/commands/cat/glossary_actions.py +59 -1
  6. pyegeria/commands/cat/list_categories.py +185 -0
  7. pyegeria/commands/cat/list_glossaries.py +26 -33
  8. pyegeria/commands/cat/list_terms.py +47 -47
  9. pyegeria/commands/cli/egeria.py +51 -29
  10. pyegeria/commands/cli/egeria_cat.py +53 -31
  11. pyegeria/create_tech_guid_lists.py +2 -5
  12. pyegeria/glossary_browser_omvs.py +283 -113
  13. pyegeria/glossary_manager_omvs.py +150 -1594
  14. pyegeria/md_processing_utils.py +853 -0
  15. {pyegeria-5.3.6.2.5.dist-info → pyegeria-5.3.6.4.dist-info}/METADATA +1 -1
  16. {pyegeria-5.3.6.2.5.dist-info → pyegeria-5.3.6.4.dist-info}/RECORD +21 -31
  17. {pyegeria-5.3.6.2.5.dist-info → pyegeria-5.3.6.4.dist-info}/entry_points.txt +5 -0
  18. pyegeria/commands/cat/freddie_jup.py +0 -124
  19. pyegeria/commands/cat/freddie_utils.py +0 -590
  20. pyegeria/commands/cat/freddies-inbox/freddie_intro.md +0 -221
  21. pyegeria/commands/cat/freddies-outbox/Terms-2025-03-06-13-19-29-Report.md +0 -69
  22. pyegeria/commands/cat/freddies-outbox/Terms-2025-03-06-13-20-30-Update-Form.md +0 -78
  23. pyegeria/commands/cat/freddies-outbox/Terms-2025-03-06-19-39-25-Update-Form.md +0 -78
  24. pyegeria/commands/cat/glossary_creation_experiment.ipynb +0 -235
  25. pyegeria/test_j.html +0 -0
  26. pyegeria/test_m.html +0 -213
  27. pyegeria/test_m1.html +0 -273
  28. pyegeria/test_mer.ipynb +0 -596
  29. pyegeria/test_w.html +0 -213
  30. /pyegeria/commands/cat/{freddies-inbox → dr_egeria_inbox}/glossary_creation_experiment.ipynb +0 -0
  31. /pyegeria/commands/cat/{freddies-inbox → dr_egeria_inbox}/glossary_exp.md +0 -0
  32. {pyegeria-5.3.6.2.5.dist-info → pyegeria-5.3.6.4.dist-info}/LICENSE +0 -0
  33. {pyegeria-5.3.6.2.5.dist-info → pyegeria-5.3.6.4.dist-info}/WHEEL +0 -0
@@ -1,221 +0,0 @@
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- # Introduction to Freddie - an Egeria Markdown Processor
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-
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- A constant challenge in managing information is gathering enough metadata about the information to
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- allow us to manage it. A common approach is to build fancy graphical user interfaces hoping that they
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- will be attractive enough and easy enough to use that people will do so.
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-
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- Unfortunately, however, this ignores the fundamental fact that to use one of these nice GUI
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- applications, you have to step away from the tools and processes that you were in the midst of performing.
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- You have to leave your world and join someone elses.
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-
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- Freddie, is an experiment in turning this around. Its not that fancy graphical user
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- interfaces don't have a role - but rather, to look at what we can do to support the
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- tools and approaches people already use. And maybe even make their day job a little
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- easier.
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-
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- So this is what we are exploring with Freddie. An Egeria Markdown language that allows
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- users to intermix requests to Egeria with other text through the use of standard Markdown.
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-
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- This file is an example. You will see that we intersperse normal narrative text (such as this)
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- with Commands to Egeria. We introduce a specific vocabulary to make Egeria requests.
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-
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- In the example below we will create a new Egeria glossary to hold definitions related to Freddie:
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- ---
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-
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- # Create Glossary
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-
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- ## Glossary Name
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-
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- Egeria-Markdown
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-
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- ## Language
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-
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- English
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-
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- ## Description
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-
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- Glossary to describe the vocabulary of Freddie - an Egeria Markdown language to support the exchange of metadata in a
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- Markdown form.
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- Freddie allows users to input metadata using any text entry system that supports the entry of standard Markdown
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- characters and through post-processing
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- commands, validates the Egeria content and allows the requests to be sent to Egeria. This is an update
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-
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- ## Usage
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-
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- 1. (optional) load an example or template for the type of object from Egeria.
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- 2. Create a new document (perhaps from the template) and edit it, adding in the content with the Freddie controlled
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- Markdown language.
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- 3. Process the document to validate and display it before you submit it, Validation may annotate your document with
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- recommendations and potential issues.
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- 4. Submit the document to Egeria using the Freddie_sings command.
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-
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- ## <Qualified Name>
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-
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- ## <GUID>
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-
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- ---
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-
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- # First Walk-Through
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- The block of markdown above is a request to create a new Egeria Glossary called `Egeria-Markdown`. Let's briefly walk
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- through. The command starts when we see `# Create Glossary`. This is a known phrase in Freddie. When we see this
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- phrase we recognize that this is an egeria markdown request block. The request block ends if we encounter another `#` or
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- `---`, or run out of text. Within this request block we note some **attributes** that begin with a `## `. The first that
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- we encounter is `## Glossary Name`. Not all attributes need to be filled in. Later, we'll process this file and demonstrate
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- how to tell - but first, lets look at the attributes shown:
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-
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- * `## Glossary Name` - this is the display name of the glossary. In this case the name is `Egeria-Markdown` As you can
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- see, the value of the attribute is the plain text that follows it.
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- * `## Language` - what language will the terms of the glossary be in (yes there are ways to have mixed language but
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- Freddie strives to be as simple as possible).
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- * `## Description` - a description of the glossary and its purpose.
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- * `## Usage` - how the glossary is meant to be used and by whom.
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- * `## <Qualified Name>` - every element in Egeria must have a unique qualified name that we use to distinguish
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- it from all other elements. The qualified name is meant to be understandable by humans, although it may follow
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- formatting conventions. This attributes is in angle brackets because at this point we can't fill it in - we are just
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- in the midst of creating the glossary. A qualified name will be created for us as part of the glossary creation. We'll
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- see a little later how we get that.
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- * `## <GUID>` - same story as qualified name except that this is meant for automation and not people.
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-
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- And that's it. That's all we need to do to specify the creation of a new glossary (well - mostly - we'll reveal a few
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- more details a bit later).
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-
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- ## Great! That was easy!
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-
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- We now have a nice, clean, new...and empty...glossary - guess we better start filling it. Lets create a couple of terms.
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-
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- ---
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-
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- # Create Term
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-
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- ## Glossary Name
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-
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- Egeria-Markdown
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-
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- ## Term Name
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-
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- Command
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-
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- ## Summary
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-
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- Commands are how a user of the Freddie markdown language requests an action.
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-
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- ## Description
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-
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- Commands are how a user can request Egeria to take an action such as Create or Update an Egeria element. Freddie
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- provides
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- a limited (but growing) set of commands. Freddie commands align with the pyegeria 'hey-egeria' command line interface.
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-
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- ## Abbreviation
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-
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- ## Examples
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-
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- Create Glossary or
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- Update Glossary or
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- Create Term or
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- Update Term
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-
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- ## Usage
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-
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- Commands are used in the Freddie Egeria markdown language.
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-
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- ## Version
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-
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- 0.2
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-
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- ## Status
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-
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- DRAFT
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-
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- ## Qualified Name
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-
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- ---
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-
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- # Create Term
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-
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- ## Glossary Name
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-
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- Egeria-Markdown
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-
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- ## Term Name
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-
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- Source
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-
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- ## Summary
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-
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- Source of the markdown content.
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-
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- ## Description
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-
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- Source of the markdown content - could be jupter or plain markdown file.
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-
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- ## Abbreviation
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-
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- ## Examples
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-
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- ## Usage
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-
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- ## Version
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-
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- 0.1
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-
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- ## Status
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-
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- DRAFT
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-
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- ## Update Description
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-
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- ---
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-
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- # Create Term
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-
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- ## Glossary Name
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-
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- Egeria-Markdown
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-
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- ## Term Name
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-
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- Directive
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-
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- ## Summary
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-
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- A directive defines how the command is to be processed.
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-
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- ## Description
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-
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- Directives are one of:
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-
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- * display - just display what we've found
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- * validate - check the validity of the requested action
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- * process - process the requested action
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-
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- ## Abbreviation
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-
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- ## Examples
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-
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- ## Usage
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-
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- ## Version
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-
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- 0.1
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-
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- ## Status
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-
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- DRAFT
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-
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- ---
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-
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- # Some terms specified - Now what?
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-
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- Ok - we've now created a glossary and three terms to go into the glossary. Here is what we'll do next.
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-
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- >Note: This is changing - so will be somewhat abstrct
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-
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- We will run a small program called freddie_md.py to operate on this markdown file. When we run this program we
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- tell it not just the name of the file to process but also provide a directive on what to do. Currently we have the
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- choice of:
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-
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- 1. Display - just parse the file, breaking it down into request blocks, and display what we find
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- 2. Validate - parse the file and validate if the commands can be processed - showing information about what we observe.
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- 3. Process - parse the request blocks and execute the commands - and produce a new output file to simplify further processing.
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-
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- # Great --> let's give it a try!
@@ -1,69 +0,0 @@
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- # Glossaries Report - created at 2025-03-06 13:19
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- Glossaries found from the search string: `All Glossaries`
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-
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- # Glossary Name: Egeria-Markdown
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-
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- ## Description
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- Glossary to describe the vocabulary of Freddie - an Egeria Markdown language to support the exchange of metadata in a Markdown form.
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- Freddie allows users to input metadata using any text entry system that supports the entry of standard Markdown characters and through post-processing
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- commands, validates the Egeria content and allows the requests to be sent to Egeria. This is an update
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-
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- ## Language
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- English
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-
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- ## Usage
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- 1) (optional) load an example or template for the type of object from Egeria.
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- 2) Create a new document (perhaps from the template) and edit it, adding in the content with the Freddie controlled Markdown language.
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- 3) Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.
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- 4) Submit the document to Egeria using the Freddie_sings command.
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- 5) anything?
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-
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- ## Qualified Name
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- Glossary:Egeria-Markdown
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-
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- ## GUID
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- 5d45b499-d0d5-4fad-bc23-763bc4073296
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-
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-
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- ---
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-
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- # Glossary Name: Teddy Bear Drop Foot Terminology
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-
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- ## Description
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- This glossary describes terminology invented for the fictitious study into Teddy Bear Drop Foot that is being used to demonstrate aspects of open governance without risk to real patient data.
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-
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- ## Language
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- English
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-
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- ## Usage
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- Used with the Teddy Bear Drop Foot Demonstration Study.
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-
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- ## Qualified Name
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- Glossary:TeddyBearDropFootTerminology
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-
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- ## GUID
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- c103d0c9-7581-47e1-a684-6bbe0ecd596f
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-
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-
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- ---
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-
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- # Glossary Name: Sustainability Glossary
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-
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- ## Description
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- Terminology associated with Coco Pharmaceutical's sustainability initiative.
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-
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- ## Language
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- English
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-
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- ## Usage
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- For all Coco Pharmaceutical employees wishing to understand more about sustainability and the organization's efforts to improve its operations.
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-
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- ## Qualified Name
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- Glossary:Sustainability
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-
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- ## GUID
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- 30bfe79e-adf2-4fda-b9c5-9c86ad6b0d6c
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-
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-
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- ---
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-
@@ -1,78 +0,0 @@
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- # Update Glossaries Form - created at 2025-03-06 13:20
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- Glossaries found from the search string: `All Glossaries`
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Egeria-Markdown
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-
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- ## Description
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- Glossary to describe the vocabulary of Freddie - an Egeria Markdown language to support the exchange of metadata in a Markdown form.
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- Freddie allows users to input metadata using any text entry system that supports the entry of standard Markdown characters and through post-processing
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- commands, validates the Egeria content and allows the requests to be sent to Egeria. This is an update
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-
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- ## Language
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- English
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-
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- ## Usage
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- 1) (optional) load an example or template for the type of object from Egeria.
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- 2) Create a new document (perhaps from the template) and edit it, adding in the content with the Freddie controlled Markdown language.
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- 3) Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.
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- 4) Submit the document to Egeria using the Freddie_sings command.
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- 5) anything?
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-
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- ## Qualified Name
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- Glossary:Egeria-Markdown
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-
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- ## GUID
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- 5d45b499-d0d5-4fad-bc23-763bc4073296
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-
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-
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- ---
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Teddy Bear Drop Foot Terminology
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-
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- ## Description
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- This glossary describes terminology invented for the fictitious study into Teddy Bear Drop Foot that is being used to demonstrate aspects of open governance without risk to real patient data.
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-
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- ## Language
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- English
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-
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- ## Usage
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- Used with the Teddy Bear Drop Foot Demonstration Study.
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-
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- ## Qualified Name
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- Glossary:TeddyBearDropFootTerminology
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-
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- ## GUID
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- c103d0c9-7581-47e1-a684-6bbe0ecd596f
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-
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-
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- ---
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Sustainability Glossary
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-
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- ## Description
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- Terminology associated with Coco Pharmaceutical's sustainability initiative.
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-
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- ## Language
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- English
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-
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- ## Usage
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- For all Coco Pharmaceutical employees wishing to understand more about sustainability and the organization's efforts to improve its operations.
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-
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- ## Qualified Name
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- Glossary:Sustainability
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-
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- ## GUID
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- 30bfe79e-adf2-4fda-b9c5-9c86ad6b0d6c
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-
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-
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- ---
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-
@@ -1,78 +0,0 @@
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- # Update Glossaries Form - created at 2025-03-06 19:39
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- Glossaries found from the search string: `All Glossaries`
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Egeria-Markdown
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-
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- ## Description
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- Glossary to describe the vocabulary of Freddie - an Egeria Markdown language to support the exchange of metadata in a Markdown form.
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- Freddie allows users to input metadata using any text entry system that supports the entry of standard Markdown characters and through post-processing
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- commands, validates the Egeria content and allows the requests to be sent to Egeria. This is an update
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-
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- ## Language
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- English
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-
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- ## Usage
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- 1) (optional) load an example or template for the type of object from Egeria.
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- 2) Create a new document (perhaps from the template) and edit it, adding in the content with the Freddie controlled Markdown language.
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- 3) Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.
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- 4) Submit the document to Egeria using the Freddie_sings command.
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- 5) anything?
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-
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- ## Qualified Name
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- Glossary:Egeria-Markdown
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-
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- ## GUID
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- 5d45b499-d0d5-4fad-bc23-763bc4073296
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-
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-
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- ---
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Teddy Bear Drop Foot Terminology
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-
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- ## Description
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- This glossary describes terminology invented for the fictitious study into Teddy Bear Drop Foot that is being used to demonstrate aspects of open governance without risk to real patient data.
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-
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- ## Language
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- English
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-
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- ## Usage
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- Used with the Teddy Bear Drop Foot Demonstration Study.
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-
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- ## Qualified Name
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- Glossary:TeddyBearDropFootTerminology
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-
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- ## GUID
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- c103d0c9-7581-47e1-a684-6bbe0ecd596f
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-
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-
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- ---
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-
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- # Update Glossary
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-
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- ## Glossary Name
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- Sustainability Glossary
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-
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- ## Description
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- Terminology associated with Coco Pharmaceutical's sustainability initiative.
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-
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- ## Language
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- English
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-
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- ## Usage
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- For all Coco Pharmaceutical employees wishing to understand more about sustainability and the organization's efforts to improve its operations.
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-
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- ## Qualified Name
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- Glossary:Sustainability
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-
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- ## GUID
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- 30bfe79e-adf2-4fda-b9c5-9c86ad6b0d6c
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-
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-
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- ---
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-
@@ -1,235 +0,0 @@
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- {
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- "cells": [
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- {
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- "cell_type": "markdown",
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- "id": "f211c1736f87555",
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- "metadata": {},
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- "source": [
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- "# This notebook contains experimental Freddie commands\n",
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- "## Lets see if this is parsed\n",
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- "meow"
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- ]
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- },
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- {
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- "cell_type": "markdown",
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- "id": "3b321563-4977-496a-963b-9b9dd75de968",
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- "metadata": {},
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- "source": [
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- "# Create Glossary\n",
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- "## Glossary Name\n",
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- "\n",
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- "Egeria-Markdown\n",
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- "\n",
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- "## Language\n",
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- "English\n",
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- "\n",
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- "## Description\n",
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- "\n",
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- "Glossary to describe the vocabulary of Freddie - an Egeria Markdown language to support the exchange of metadata in a Markdown form.\n",
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- "Freddie allows users to input metadata using any text entry system that supports the entry of standard Markdown characters and through post-processing\n",
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- "commands, validates the Egeria content and allows the requests to be sent to Egeria.\n",
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- "\n",
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- "\n",
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- "## Usage\n",
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- "1) (optional) load an example or template for the type of object from Egeria.\n",
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- "2) Create a new document (perhaps from the template) and edit it, adding in the content with the Freddie controlled Markdown language.\n",
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- "3) Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.\n",
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- "4) Submit the document to Egeria using the Freddie_sings command.\n",
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- "\n",
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- "## <Qualified Name>\n",
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- "\n",
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- "## <GUID>\n",
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- "\n"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": null,
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- "id": "a7295df2-5afb-46ba-889a-94881d883678",
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- "metadata": {
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- "execution": {
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- "iopub.execute_input": "2025-02-27T15:23:58.820592Z",
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- "iopub.status.busy": "2025-02-27T15:23:58.820416Z",
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- "iopub.status.idle": "2025-02-27T15:24:00.802861Z",
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- "shell.execute_reply": "2025-02-27T15:24:00.802425Z",
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- "shell.execute_reply.started": "2025-02-27T15:23:58.820583Z"
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- }
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- },
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- "outputs": [],
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- "source": [
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- "%pip install jupyter-notebook-parser\n",
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- "%pip install marko"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": null,
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- "id": "d02383df-f617-48f7-be54-e930b6275a7e",
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- "metadata": {
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- "execution": {
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- "iopub.execute_input": "2025-02-27T15:25:33.155175Z",
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- "iopub.status.busy": "2025-02-27T15:25:33.154695Z",
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- "iopub.status.idle": "2025-02-27T15:25:33.162801Z",
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- "shell.execute_reply": "2025-02-27T15:25:33.162362Z",
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- "shell.execute_reply.started": "2025-02-27T15:25:33.155158Z"
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- }
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- },
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- "outputs": [],
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- "source": [
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- "import json\n",
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- "import marko\n",
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- "from jupyter_notebook_parser import JupyterNotebookParser"
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- ]
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- },
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- {
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- "cell_type": "code",
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- "execution_count": null,
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- "id": "b5560fcd-afe4-4133-8204-8f2535feb9b6",
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- "metadata": {
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- "execution": {
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- "iopub.execute_input": "2025-02-27T15:25:34.354443Z",
91
- "iopub.status.busy": "2025-02-27T15:25:34.354300Z",
92
- "iopub.status.idle": "2025-02-27T15:25:34.358702Z",
93
- "shell.execute_reply": "2025-02-27T15:25:34.358236Z",
94
- "shell.execute_reply.started": "2025-02-27T15:25:34.354435Z"
95
- }
96
- },
97
- "outputs": [],
98
- "source": [
99
- "parsed = JupyterNotebookParser('glossary_creation_experiment.ipynb')\n",
100
- "\n",
101
- "parsed.get_all_cells() # returns List[Dict], each Dict is a notebook cell\n",
102
- "\n",
103
- "cells = parsed.get_markdown_cells() # returns List[Dict], each Dict is a markdown cel\n",
104
- "indices = parsed.get_markdown_cell_indices() # returns List[int], each is a markdown cell's index\n",
105
- "cell_sources = parsed.get_markdown_cell_sources() # returns List[str], each is a markdown cell's text\n",
106
- "print(json.dumps(cell_sources, indent = 4))"
107
- ]
108
- },
109
- {
110
- "cell_type": "code",
111
- "execution_count": null,
112
- "id": "79dffa96-7e2a-40e3-a0d7-ba363d87b70c",
113
- "metadata": {
114
- "execution": {
115
- "iopub.execute_input": "2025-02-27T15:42:47.354237Z",
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- "iopub.status.busy": "2025-02-27T15:42:47.353238Z",
117
- "iopub.status.idle": "2025-02-27T15:42:47.360634Z",
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- "shell.execute_reply": "2025-02-27T15:42:47.360090Z",
119
- "shell.execute_reply.started": "2025-02-27T15:42:47.354193Z"
120
- }
121
- },
122
- "outputs": [],
123
- "source": [
124
- "parsed_markdown = marko.parse(cell_sources[0])\n",
125
- "print(type(parsed_markdown))"
126
- ]
127
- },
128
- {
129
- "cell_type": "code",
130
- "execution_count": null,
131
- "id": "f3d66578-cf02-4e95-a102-f84fbe3aae95",
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- "metadata": {
133
- "execution": {
134
- "iopub.execute_input": "2025-02-27T15:44:51.000320Z",
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- "iopub.status.busy": "2025-02-27T15:44:51.000168Z",
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- "iopub.status.idle": "2025-02-27T15:44:51.007790Z",
137
- "shell.execute_reply": "2025-02-27T15:44:51.007211Z",
138
- "shell.execute_reply.started": "2025-02-27T15:44:51.000309Z"
139
- }
140
- },
141
- "outputs": [],
142
- "source": [
143
- "parsed_source = marko.parse_source(cell_sources[0])"
144
- ]
145
- },
146
- {
147
- "cell_type": "code",
148
- "execution_count": null,
149
- "id": "7cc1a99c-46b3-42c9-8b38-77fb721586a7",
150
- "metadata": {
151
- "execution": {
152
- "iopub.execute_input": "2025-02-27T15:45:28.853162Z",
153
- "iopub.status.busy": "2025-02-27T15:45:28.852948Z",
154
- "iopub.status.idle": "2025-02-27T15:45:28.856556Z",
155
- "shell.execute_reply": "2025-02-27T15:45:28.856159Z",
156
- "shell.execute_reply.started": "2025-02-27T15:45:28.853153Z"
157
- }
158
- },
159
- "outputs": [],
160
- "source": [
161
- "? marko"
162
- ]
163
- },
164
- {
165
- "cell_type": "code",
166
- "execution_count": null,
167
- "id": "ca5f9660-1f56-4de9-8127-5e7e4a922b5f",
168
- "metadata": {},
169
- "outputs": [],
170
- "source": []
171
- },
172
- {
173
- "cell_type": "code",
174
- "execution_count": null,
175
- "id": "e967897d83588f86",
176
- "metadata": {},
177
- "outputs": [],
178
- "source": []
179
- },
180
- {
181
- "cell_type": "markdown",
182
- "id": "ed29f0e5d46a7c20",
183
- "metadata": {},
184
- "source": [
185
- "# Create Glossary\n",
186
- "## Glossary Name\n",
187
- "\n",
188
- "Another Test\n",
189
- "\n",
190
- "## Language\n",
191
- "English\n",
192
- "\n",
193
- "## Description\n",
194
- "\n",
195
- "Another quick test\n",
196
- "\n",
197
- "## Usage\n",
198
- "Alternate sundays\n",
199
- "\n",
200
- "## <Qualified Name>\n",
201
- "\n",
202
- "## <GUID>"
203
- ]
204
- },
205
- {
206
- "cell_type": "code",
207
- "execution_count": null,
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- "id": "e36a5074b9a94c1a",
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- "metadata": {},
210
- "outputs": [],
211
- "source": []
212
- }
213
- ],
214
- "metadata": {
215
- "kernelspec": {
216
- "display_name": "Python 3 (ipykernel)",
217
- "language": "python",
218
- "name": "python3"
219
- },
220
- "language_info": {
221
- "codemirror_mode": {
222
- "name": "ipython",
223
- "version": 3
224
- },
225
- "file_extension": ".py",
226
- "mimetype": "text/x-python",
227
- "name": "python",
228
- "nbconvert_exporter": "python",
229
- "pygments_lexer": "ipython3",
230
- "version": "3.12.9"
231
- }
232
- },
233
- "nbformat": 4,
234
- "nbformat_minor": 5
235
- }
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