pyegeria 5.3.10__py3-none-any.whl → 5.4.0.dev3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (47) hide show
  1. commands/cat/debug_log.2025-06-05_20-24-18_123924.log.zip +0 -0
  2. commands/cat/debug_log.2025-06-10_08-45-03_929921.log.zip +0 -0
  3. commands/cat/debug_log.2025-06-11_09-57-21_247890.log.zip +0 -0
  4. commands/cat/debug_log.2025-06-12_16-14-31_212042.log.zip +0 -0
  5. commands/cat/debug_log.log +1267 -0
  6. commands/cat/dr_egeria_md.py +32 -5
  7. commands/cat/list_collections.py +10 -4
  8. commands/cat/list_data_designer.py +172 -0
  9. commands/cat/solution_architect_log.log +0 -0
  10. md_processing/__init__.py +7 -2
  11. md_processing/data/commands.json +4666 -848
  12. md_processing/dr_egeria_inbox/data_designer_search_test.md +11 -0
  13. md_processing/dr_egeria_inbox/data_test.md +106 -13
  14. md_processing/dr_egeria_inbox/data_test2.md +376 -0
  15. md_processing/dr_egeria_inbox/{search_test.md → glossary_search_test.md} +1 -0
  16. md_processing/dr_egeria_inbox/solution-components.md +66 -91
  17. md_processing/md_commands/data_designer_commands.py +840 -557
  18. md_processing/md_commands/solution_architect_commands.py +985 -0
  19. md_processing/md_processing_utils/common_md_proc_utils.py +262 -89
  20. md_processing/md_processing_utils/common_md_utils.py +11 -4
  21. md_processing/md_processing_utils/md_processing_constants.py +18 -16
  22. pyegeria/_client.py +39 -0
  23. pyegeria/classification_manager_omvs.py +1 -1
  24. pyegeria/collection_manager_omvs.py +248 -188
  25. pyegeria/data_designer_omvs.py +217 -9
  26. pyegeria/governance_officer_omvs.py +2349 -0
  27. pyegeria/output_formatter.py +24 -12
  28. pyegeria/solution_architect_omvs.py +4219 -1084
  29. pyegeria/utils.py +15 -2
  30. {pyegeria-5.3.10.dist-info → pyegeria-5.4.0.dev3.dist-info}/METADATA +2 -1
  31. {pyegeria-5.3.10.dist-info → pyegeria-5.4.0.dev3.dist-info}/RECORD +35 -36
  32. {pyegeria-5.3.10.dist-info → pyegeria-5.4.0.dev3.dist-info}/entry_points.txt +4 -0
  33. md_processing/dr_egeria_outbox/processed-2025-05-15 19:52-data_test.md +0 -94
  34. md_processing/dr_egeria_outbox/processed-2025-05-16 07:39-data_test.md +0 -88
  35. md_processing/dr_egeria_outbox/processed-2025-05-17 16:01-data_field.md +0 -56
  36. md_processing/dr_egeria_outbox/processed-2025-05-18 15:51-data_test.md +0 -103
  37. md_processing/dr_egeria_outbox/processed-2025-05-18 16:47-data_test.md +0 -94
  38. md_processing/dr_egeria_outbox/processed-2025-05-19 07:14-data_test.md +0 -96
  39. md_processing/dr_egeria_outbox/processed-2025-05-19 07:20-data_test.md +0 -100
  40. md_processing/dr_egeria_outbox/processed-2025-05-19 07:22-data_test.md +0 -88
  41. md_processing/dr_egeria_outbox/processed-2025-05-19 09:26-data_test.md +0 -91
  42. md_processing/dr_egeria_outbox/processed-2025-05-19 10:27-data_test.md +0 -91
  43. md_processing/dr_egeria_outbox/processed-2025-05-19 14:04-data_test.md +0 -91
  44. md_processing/md_commands/blueprint_commands.py +0 -303
  45. /commands/cat/{list_data_structures.py → list_data_structures_full.py} +0 -0
  46. {pyegeria-5.3.10.dist-info → pyegeria-5.4.0.dev3.dist-info}/LICENSE +0 -0
  47. {pyegeria-5.3.10.dist-info → pyegeria-5.4.0.dev3.dist-info}/WHEEL +0 -0
@@ -0,0 +1,11 @@
1
+
2
+
3
+ # View Data Dictionaries
4
+
5
+ ## Output Format
6
+ DICT
7
+ ## Search String
8
+
9
+ *
10
+
11
+
@@ -8,22 +8,38 @@ ___
8
8
  Data Specification for the Teddy Bear Drop Foot Clinical Trial
9
9
  ___
10
10
 
11
- # foo Create Data Specification
11
+ # Create Data Specification
12
12
 
13
13
  ## Data Specification
14
14
 
15
-
16
15
  Data Specification for the Teddy Bear Drop Foot Clinical Trial
17
- >woof
16
+
17
+ ## Description
18
+
19
+ Principle data requirements for Teddy Bear Drop Foot clinical trial.
20
+ ___
21
+
22
+ # Create Data Specification
23
+
24
+ ## Data Specification
25
+ Data Specification for the Werewolf Transformation Clinical Trial
26
+
18
27
  ## Description
19
- >Meow -
20
28
 
21
- Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
29
+ Principle data requirements for Werewolf Transformation clinical trial.
30
+
31
+ # Create Data Specification
32
+
33
+ ## Data Specification
34
+ Test Spec
35
+
36
+ ## Description
22
37
 
38
+ for testing purposes only.
23
39
 
24
40
 
25
41
 
26
- # foo Create Data Dictionary
42
+ # Create Data Dictionary
27
43
  ## Name
28
44
  Clinical Trial Data Dictionary
29
45
 
@@ -31,6 +47,12 @@ Clinical Trial Data Dictionary
31
47
  A data dictionary for clinical trial data elements.
32
48
 
33
49
 
50
+ # Create Data Dictionary
51
+ ## Name
52
+ Pharma Data Dictionary
53
+
54
+ ## Description
55
+ A data dictionary of elements relevant to the Pharma communities.
34
56
 
35
57
 
36
58
  ___
@@ -41,17 +63,17 @@ ___
41
63
  TBDF-Incoming Weekly Measurement Data
42
64
  ___
43
65
 
44
- # Update Data Structure
66
+ # Create Data Structure
45
67
 
46
68
  ## Data Structure
47
69
 
48
70
  TBDF-Incoming Weekly Measurement Data
49
71
 
50
72
  ## Description
51
- This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
73
+ This describes the weekly measurement data for each patient in the Teddy Bear drop foot clinical trial
52
74
 
53
75
  ## In Data Specification
54
- Data Specification for the Teddy Bear Drop Foot Clinical Trial
76
+ Data Specification for the Teddy Bear Drop Foot Clinical Trial, Test Spec
55
77
 
56
78
 
57
79
  ## Qualified Name
@@ -61,13 +83,13 @@ ___
61
83
 
62
84
  WWT-Incoming Weekly Measurement Data
63
85
 
64
- # foo Create Data Structure
86
+ # Create Data Structure
65
87
 
66
88
  ## Qualified Name
67
89
  DataStruct::WWT-Incoming Weekly Measurement Data
68
90
 
69
91
  ## GUID
70
- ae221834-a3a6-4f32-ac94-110dff761b49
92
+
71
93
 
72
94
  ## Data Structure
73
95
 
@@ -76,11 +98,82 @@ WWT-Incoming Weekly Measurement Data
76
98
 
77
99
  ## Description
78
100
  A collection of data fields that form a data structure.
79
-
101
+ Meow
80
102
 
81
103
  ## In Data Specification
82
104
 
83
-
105
+ Test Spec
106
+ Data Specification for the Teddy Bear Drop Foot Clinical Trial
84
107
 
85
108
  ## Qualified Name
109
+ ___
110
+
111
+
112
+
113
+ # foo Create Data Field
114
+ ## Name
115
+ PatientId
116
+ ## Description
117
+ Unique identifier of the patient
118
+ ## Data Type
119
+ String
120
+ ## Position
121
+ 0
122
+ ## Min Cardinality
123
+ 1
124
+ ## Max Cardinality
125
+ 1
126
+ ## In Data Structure
127
+ > initially a data field must have at least one place it is part of and can update
128
+
129
+ TBDF-Incoming Weekly Measurement Data
130
+
131
+ ## Data Class
132
+ ## Glossary Term
133
+ GlossaryTerm::ClinicalTrialTerminology::PatientId
134
+ ## Namespace
135
+ > forms part of qualified name
136
+ ## Version
137
+
138
+ ## In Data Dictionary
139
+ Clinical Trial Data Dictionary
140
+
141
+ ## Qualified Name
142
+
143
+ DataField::PatientId
144
+
145
+ ___
146
+
147
+ # foo Create Data Field
148
+ ## Name
149
+ HospitalId
150
+ ## Description
151
+ Unique identifier for a hospital
152
+ ## Data Type
153
+ String
154
+ ## Position
155
+ 0
156
+ ## Min Cardinality
157
+ 1
158
+ ## Max Cardinality
159
+ 1
160
+ ## Parent Data Field
161
+ DataField::PatientId
162
+ ## In Data Structure
163
+ > initially a data field must have at least one place it is part of and can update
164
+
165
+ TBDF-Incoming Weekly Measurement Data
166
+
167
+ ## Data Class
168
+ ## Glossary Term
169
+ GlossaryTerm::ClinicalTrialTerminology::PatientId
170
+ ## Namespace
171
+ > forms part of qualified name
172
+ ## Version
173
+
174
+ ## In Data Dictionary
175
+ Clinical Trial Data Dictionary
176
+
177
+ ## Qualified Name
86
178
 
179
+ DataField::HospitalId
@@ -0,0 +1,376 @@
1
+ # Create Term
2
+ ## In Glossary
3
+ Coco Pharmaceuticals Clinical Trial Terminology
4
+ ## Term Name
5
+ Hospital Identifier
6
+ ## Description
7
+ Identifies each hospital uniquely. Used within the PatientId field.
8
+
9
+ ___
10
+
11
+ # Create Data Dictionary
12
+ ## Name
13
+ Clinical Trial Data Dictionary
14
+
15
+ ## Description
16
+ A data dictionary for clinical trial data elements.
17
+
18
+
19
+ # Create Data Dictionary
20
+ ## Name
21
+ Pharma Data Dictionary
22
+
23
+ ## Description
24
+ A data dictionary of elements relevant to the Pharma communities.
25
+
26
+
27
+ ___
28
+
29
+ # Create Data Spec
30
+
31
+ ## Data Specification
32
+
33
+ Data Specification for the Teddy Bear Drop Foot Clinical Trial
34
+
35
+ ## Description
36
+ Principle data requirements for Teddy Bear Drop Foot Clinical Trial. Meow
37
+
38
+ ## Qualified Name
39
+ DataSpec::Data Specification for the Teddy Bear Drop Foot Clinical Trial
40
+
41
+ ## Classifications
42
+
43
+ ## Guid
44
+
45
+
46
+ ___
47
+
48
+
49
+ # Create Data Specification
50
+
51
+ ## Data Specification Name
52
+
53
+ Test Spec2
54
+
55
+ ## Description
56
+ A test spec - Meow
57
+
58
+ ## Qualified Name
59
+
60
+ ## Classifications
61
+
62
+ ## Guid
63
+
64
+ ## Additional Properties
65
+ {
66
+ "a prop" : "meow",
67
+ "another" : "woof"
68
+ }
69
+ ___
70
+
71
+ # Create Data Dictionary
72
+
73
+ ## Dictionary Name
74
+
75
+ dw
76
+
77
+ ## Description
78
+ A data dictionary for dan..
79
+ ## Qualified Name
80
+ DataDict::dw
81
+
82
+ ## Classifications
83
+
84
+ ## GUID
85
+
86
+
87
+ ___
88
+
89
+
90
+ # Create Data Structure
91
+
92
+ ## Data Structure Name
93
+
94
+ TBDF-Incoming Weekly Measurement Data
95
+
96
+ ## Description
97
+ This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial.
98
+
99
+ ## Qualified Name
100
+ DataStruct::TBDF-Incoming Weekly Measurement Data
101
+
102
+ ## Namespace
103
+
104
+ ## In Data Specification
105
+ Data Specification for the Teddy Bear Drop Foot Clinical Trial, Test Spec2
106
+
107
+ ## Version Identifier
108
+
109
+
110
+ ## Guid
111
+
112
+
113
+ ___
114
+
115
+ # Create Data Structure
116
+
117
+ ## Data Structure Name
118
+
119
+ WWT-Incoming Weekly Measurement Data
120
+
121
+ ## Description
122
+ A collection of data fields that form a data structure.
123
+
124
+ ## Qualified Name
125
+ DataStruct::WWT-Incoming Weekly Measurement Data
126
+
127
+ ## In Data Specification
128
+ Test Spec2
129
+
130
+ ## Namespace
131
+
132
+
133
+ ## Version Identifier
134
+
135
+
136
+ ## GUID
137
+
138
+
139
+
140
+ ___
141
+
142
+ # Create Data Field
143
+
144
+ ## Data Field Name
145
+
146
+ PatientId
147
+
148
+ ## Description
149
+ Unique identifier of the patient
150
+
151
+ ## Qualified Name
152
+ DataField::PatientId
153
+
154
+
155
+ ## Data Type
156
+
157
+ String
158
+
159
+ ## Guid
160
+
161
+ ## Data Class
162
+
163
+ ## In Data Dictionary
164
+ DataDict::Clinical Trial Data Dictionary, Pharma Data Dictionary
165
+
166
+ ## In Data Structure
167
+ TBDF-Incoming Weekly Measurement Data
168
+ DataStruct::WWT-Incoming Weekly Measurement Data
169
+
170
+ ## Glossary Term
171
+ GlossaryTerm::ClinicalTrialTerminology::PatientId
172
+ ___
173
+
174
+
175
+
176
+ # Create Data Field
177
+
178
+ ## Data Field Name
179
+
180
+ HospitalId
181
+
182
+ ## Description
183
+ Unique identifier for a hospital. Used in forming PatientId.
184
+
185
+ ## Qualified Name
186
+ DataField::HospitalId
187
+
188
+ ## Data Type
189
+ String
190
+
191
+ ## In Data Dictionary
192
+ DataDict::Clinical Trial Data Dictionary
193
+
194
+ ## In Data Structure
195
+
196
+ DataStruct::TBDF-Incoming Weekly Measurement Data
197
+ DataStruct::WWT-Incoming Weekly Measurement Data
198
+
199
+ ## Position
200
+ 1
201
+
202
+ ## Min Cardinality
203
+ 0
204
+
205
+ ## Max Cardinality
206
+ 1
207
+
208
+ ## Glossary Term
209
+ Term::Hospital Identifier
210
+
211
+ ## Parent Data Field
212
+ DataField::PatientId
213
+
214
+ ## Journal Entry
215
+ Just creating this term
216
+
217
+ ___
218
+
219
+ # Create Data Field
220
+
221
+ ## Data Field Name
222
+
223
+ PatientSN
224
+
225
+ ## Description
226
+ Unique identifier of the patient within a hospital.
227
+
228
+ ## Qualified Name
229
+ DataField::PatientSN
230
+
231
+
232
+ ## Data Type
233
+
234
+ String
235
+ ## Position
236
+ 2
237
+
238
+ ## Min Cardinality
239
+ 0
240
+
241
+ ## Max Cardinality
242
+ 1
243
+
244
+ ## In Data Dictionary
245
+ DataDict::Clinical Trial Data Dictionary
246
+
247
+ ## In Data Structure
248
+ DataStruct::TBDF-Incoming Weekly Measurement Data
249
+ DataStruct::WWT-Incoming Weekly Measurement Data
250
+
251
+ ## Parent Data Field
252
+ DataField::PatientId
253
+
254
+ ## Journal Entry
255
+ Just creating this term
256
+
257
+ ___
258
+
259
+ # foo Create Data Class
260
+
261
+ ## Data Class Name
262
+
263
+ ISO-Date
264
+
265
+ ## Description
266
+ ISO 8601 standard date. A date of the form YYYY-MM-DD
267
+
268
+ ## Qualified Name
269
+ DataClass::ISO-Date
270
+
271
+ ## Data Type
272
+ Date
273
+ ## Position
274
+ 0
275
+
276
+ ## Min Cardinality
277
+ 0
278
+
279
+ ## Max Cardinality
280
+ 1
281
+
282
+ ## In Data Dictionary
283
+ DataDict::Clinical Trial Data Dictionary
284
+
285
+
286
+ ## Containing Data Class
287
+
288
+ ## Specializes Data Class
289
+
290
+ ## Journal Entry
291
+ Just creating this date
292
+
293
+
294
+ ___
295
+
296
+
297
+ # Update Data Field
298
+
299
+ ## Data Field Name
300
+
301
+ Date
302
+
303
+ ## Description
304
+ A date of the form YYYY-MM-DD
305
+
306
+ ## Qualified Name
307
+ DataField::Date
308
+
309
+
310
+ ## Data Type
311
+ Date
312
+
313
+ ## Position
314
+ 0
315
+
316
+ ## Min Cardinality
317
+ 0
318
+
319
+ ## Max Cardinality
320
+ 1
321
+
322
+ ## In Data Dictionary
323
+ DataDict::Clinical Trial Data Dictionary
324
+
325
+ ## In Data Structure
326
+ TBDF-Incoming Weekly Measurement Data
327
+ DataStruct::WWT-Incoming Weekly Measurement Data
328
+
329
+ ## Parent Data Field
330
+
331
+ ## Data Class
332
+ DataClass::ISO-Date
333
+
334
+ ## Journal Entry
335
+ Just creating this date
336
+
337
+
338
+ ___
339
+
340
+
341
+
342
+ # foo Create Data Class
343
+
344
+ ## Data Class Name
345
+
346
+ Address
347
+
348
+ ## Description
349
+ Address Class
350
+
351
+ ## Qualified Name
352
+
353
+
354
+
355
+ ## Data Type
356
+
357
+ String
358
+ ## Position
359
+ 0
360
+
361
+ ## Min Cardinality
362
+ 0
363
+
364
+ ## Max Cardinality
365
+ 1
366
+
367
+ ## In Data Dictionary
368
+ DataDict::Clinical Trial Data Dictionary
369
+
370
+
371
+ ## Containing Data Class
372
+
373
+ ## Specializes Data Class
374
+
375
+ ## Journal Entry
376
+ Just creating this date
@@ -1,4 +1,5 @@
1
1
 
2
+
2
3
  # List Terms
3
4
  ## Output Format
4
5
  DICT