pyegeria 5.2.1__py3-none-any.whl → 5.3__py3-none-any.whl

md_processing/dr_egeria_inbox/t2.md

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+# Demonstrating updates and additions
+
+This document was derived from the processing of the file dr_egeria_intro.md; All of the Dr.Egeria statements have been
+preserved (including the generated attributes such as the unique GUIDs) and the explanatory text has been replaced.
+
+In this document we will add glossary categories, update existing terms to categorize them, and add some new terms that
+further explain dr.egeria.  This document is being written off-line (actually on a plane) - demonstrating one of the
+intriguing features of dr.egeria - because its just text, it can be edited anywhere and anytime that there is a text
+editor. Dr.Egeria files can be emailed, sent via text message, slack or maintained in a `git` repository.
+It's just text with markdown annotations.
+
+Ok, let's get started. First, we have the `Update Glossary` command below. There is nothing new we need to add at this
+point so we can just leave it as-is. When this document is processed it will apply updates but if there are none,
+It doesn't matter.
+
+
+---
+
+
+# Update Glossary
+
+## Glossary Name 
+
+Egeria-Markdown
+
+## Description
+Glossary to describe the vocabulary of Dr.Egeria - an Egeria Markdown language to support the exchange of metadata in a Markdown form.
+Dr.Egeria allows users to input metadata using any text entry system that supports the entry of standard Markdown
+notation and through post-processing
+commands, validates the Egeria content and allows the requests to be sent to Egeria.
+
+## Language
+English
+
+## Usage
+1. (optional) load an example or template for the type of object from Egeria.
+2. Create a new document (perhaps from a template) and edit it, adding in the content with the Dr.Egeria controlled Markdown language.
+3. Process the document to validate and display it before you submit it, Validation may annotate your document with recommendations and potential issues.
+4. Submit the document to Egeria using the Dr.Egeria commands.
+
+## Qualified Name
+Glossary::Egeria-Markdown
+
+## Guid
+5878850f-0fc5-484d-8426-511c18615a66
+
+
+
+Ok, now let's create a couple of glossary categories. They will be:
+
+* **Writing Dr.Egeria Markdown** - where we describe elements of the Dr.Egeria language as terms within the category.
+* **Processing Dr.Egeria Markdown** - where we describe the commands for processing Dr.Egeria.
+
+
+Glossary categories have the following attributes:
+
+| Attribute Name | Input Required? | Generated/Default? | Unique? | Notes |
+|:-|:-|:-|:-|:-|
+| Category Name | Yes | No | No | A display name (informal name). |
+| Owning Glossary | Yes | No | Yes | This is the qualified name of the glossary that owns this category. |
+| Description | No | No  | No | A textual description of this category |
+| Qualified Name | No | Yes | Yes | The qualified name can either be provided by the user or generated. If generated, a pattern is followed. |
+| GUID | No | Yes | Yes | GUIDs are always generated by Egeria. They are meant for automation, not people. |
+
+Qualified Names can either be user specified or generated. If generated the following the form:
+`{local-qualifier}:{type}:{display name}`
+
+* Local-Qualifier is an optional string that can be useful to both disambiguate similar names and to add some local context. Local qualifiers could be set to organization names, functions, business context, etc. The settings for a local qualifier is set either by setting the environment variable `EGERIA_LOCAL_QUALIFIER` or by passing in a parameter when executing one of the Dr.Egeria enabled commands. This could also be set for a team by an Egeria administrator.
+
+
+
+# Update Categories
+
+## Category Name 
+
+Writing Dr.Egeria Markdown
+
+## Description
+These terms describe the elements of the Dr.Egeria Markdown language and how to use them.
+
+## In Glossary
+Glossary::Egeria-Markdown
+
+## Qualified Name
+Category:Writing-Dr.Egeria-Markdown
+
+## Guid
+c5ba25df-f7b1-4ecf-913a-c5c83a03d63a
+
+
+---
+
+
+
+
+# Update Categories
+
+## Category Name 
+
+Processing Dr.Egeria Markdown
+
+## Description
+These terms describe commands to process Dr.Egeria Markdown.
+
+## In Glossary
+Glossary::Egeria-Markdown
+
+## Qualified Name
+Category:Processing-Dr.Egeria-Markdown
+
+## Guid
+1f13ec0d-e0ad-4327-bc1c-58e4174dd950
+
+
+---
+
+
+
+Ok now, let's add categories to some of the terms.  Let's review the attributes of a term:
+
+| Attribute Name  | Input Required? | Generated/Default? | Unique? | Notes |
+|:----------------| :- | :- | :- | :-|
+| Term Name       | Yes | No | No | A display name (informal name). |
+| Owning Glossary | Yes | No | Yes | This is the qualified name of the glossary that owns this term. |
+| Categories      | No | No | Yes | This is the qualified (unique) name of the category. Multiple categories can be assigned, separated by a `,` or line. |
+| Description     | No | No  | No | A textual description of this term |
+| Qualified Name  | No | Yes | Yes | The qualified name can either be provided by the user or generated. If generated, a pattern is followed. |
+| GUID            | No | Yes | Yes | GUIDs are always generated by Egeria. They are meant for automation, not people. |
+
+
+
+# Update Term
+
+## Term Name 
+
+Command
+
+## Summary
+Commands are how a user of the Freddie markdown language requests an action.
+
+## In Glossary
+Glossary::Egeria-Markdown
+
+## Categories
+Category:Processing-Dr.Egeria-Markdown
+, Category:Writing-Dr.Egeria-Markdown
+
+## Status
+DRAFT
+
+## Description
+Commands are how a user can request Egeria to take an action such as Create or Update an Egeria element. Freddie
+provides
+a limited (but growing) set of commands. Freddie commands align with the pyegeria 'hey-egeria' command line interface.
+
+## Examples
+Create Glossary or
+Update Glossary or
+Create Term or
+Update Term
+
+## Usage
+Commands are used in the Freddie Egeria markdown language.
+
+## Published Version
+0.1
+
+## Qualified Name
+Term:Command
+
+## Guid
+f59ca92e-9021-42bb-ae20-68fbbed57a86
+
+
+---
+
+
+
+# Update Term
+
+## Term Name 
+
+Source
+
+## Summary
+Source of the markdown content.
+
+## In Glossary
+Glossary::Egeria-Markdown
+
+## Categories
+Category:Processing-Dr.Egeria-Markdown
+
+## Status
+DRAFT
+
+## Description
+Source of the markdown content - could be jupyter or plain markdown file.
+
+## Examples
+None
+
+## Usage
+None
+
+## Version
+0.1
+
+## Qualified Name
+Term:Source
+
+## Guid
+fec76950-8a4b-4f20-9032-2b3775adee2c
+
+
+---
+
+
+
+# Update Term
+
+## Term Name 
+
+Directive
+
+## Summary
+A directive defines how the command is to be processed.
+
+## In Glossary
+Glossary::Egeria-Markdown
+
+## Categories
+Category:Processing-Dr.Egeria-Markdown
+
+## Status
+DRAFT
+
+## Description
+Directives are one of:
+* display - just display what we've found
+* validate - check the validity of the requested action
+* process - process the requested action
+* review?
+
+## Examples
+None
+
+## Usage
+None
+
+## Published Version
+0.2
+
+## Qualified Name
+Term:Directive
+
+## Guid
+fa716e1d-bd97-44e7-b64c-594cb8c2867c
+
+
+---
+
+
+# Provenance
+ 
+* t2.md Derived from processing file dr_egeria_intro_part2.md on 2025-03-20 15:06
+
+---

md_processing/dr_egeria_outbox/processed-2025-05-15 19:52-data_test.md

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+
+
+
+
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+# foo Update Data Specification
+
+## Data Specification
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+>woof
+##  Description
+>Meow -
+
+Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
+
+
+
+
+# Fpp Create Data Dictionary
+## Name
+Clinical Trial Data Dictionary
+
+## Description
+A data dictionary for clinical trial data elements.
+
+
+
+
+___
+
+
+
+TBDF-Incoming Weekly Measurement Data
+
+
+# Update Data Structure Form - created at 2025-05-15 19:52
+	 Data Structure found from the search string:  `<class 'filter'>`
+
+# Update Data Structure
+
+## Data Structure Name 
+
+TBDF-Incoming Weekly Measurement Data
+
+## Description
+This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
+
+## Qualified Name
+DataStruct::TBDF-Incoming Weekly Measurement Data
+
+## Namespace
+
+
+## Version Identifier
+
+
+## Guid
+d71c7ee2-b414-4c8f-bf9b-b16bd3601855
+
+
+
+WWT-Incoming Weekly Measurement Data
+
+# Foo Update Data Structure
+
+## Qualified Name
+DataStruct::WWT-Incoming Weekly Measurement Data
+
+## GUID
+ae221834-a3a6-4f32-ac94-110dff761b49
+
+## Data Structure
+
+WWT-Incoming Weekly Measurement Data
+
+
+##  Description
+A collection of data fields that form a data structure.
+
+
+##  In Data Specification
+
+
+
+##  Qualified Name
+
+# Provenance
+
+* Results from processing file data_test.md on 2025-05-15 19:52

md_processing/dr_egeria_outbox/processed-2025-05-16 07:39-data_test.md

@@ -0,0 +1,88 @@
+
+
+
+
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+# foo Update Data Specification
+
+## Data Specification
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+>woof
+##  Description
+>Meow -
+
+Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
+
+
+
+
+# Fpp Create Data Dictionary
+## Name
+Clinical Trial Data Dictionary
+
+## Description
+A data dictionary for clinical trial data elements.
+
+
+
+
+___
+
+
+
+TBDF-Incoming Weekly Measurement Data
+
+# Update Data Structure
+
+## GUID
+d71c7ee2-b414-4c8f-bf9b-b16bd3601855
+
+## Data Structure
+
+TBDF-Incoming Weekly Measurement Data
+
+## Description
+This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
+
+## In Data Specification
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+
+## Qualified Name
+
+
+___
+
+WWT-Incoming Weekly Measurement Data
+
+# Foo Update Data Structure
+
+## Qualified Name
+DataStruct::WWT-Incoming Weekly Measurement Data
+
+## GUID
+ae221834-a3a6-4f32-ac94-110dff761b49
+
+## Data Structure
+
+WWT-Incoming Weekly Measurement Data
+
+
+##  Description
+A collection of data fields that form a data structure.
+
+
+##  In Data Specification
+
+
+
+##  Qualified Name
+
+# Provenance
+
+* Results from processing file data_test.md on 2025-05-16 07:39

md_processing/dr_egeria_outbox/processed-2025-05-17 16:01-data_field.md

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+
+# Update Collection
+
+## Collection Name 
+
+
+
+## Description
+Angle rotation of the left leg from vertical
+
+## Qualified Name
+DataField::AngleLeftField
+
+## Classifications
+
+
+## Collection Type
+
+
+## Guid
+8aa5bef9-3a20-4160-a579-6e63b4db7f67
+
+
+
+
+# Update Collection
+
+## Collection Name 
+
+
+
+## Description
+Unique identifier of the patient
+
+## Qualified Name
+DataField::PatientId
+
+## Classifications
+
+
+## Collection Type
+
+
+## Guid
+a698b362-a781-41c6-9e6e-bde6fe3a1737
+
+
+
+## In Data Dictionary
+
+None
+
+
+# Provenance
+
+* Results from processing file data_field.md on 2025-05-17 16:01

md_processing/dr_egeria_outbox/processed-2025-05-18 15:51-data_test.md

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+
+
+
+
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+# Create Data Specification
+
+## Data Specification
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+>woof
+##  Description
+>Meow -
+
+Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
+
+
+
+
+
+___
+
+# Create Data Dictionary
+## Name
+Clinical Trial Data Dictionary
+
+## Description
+A data dictionary for clinical trial data elements.
+
+
+
+
+___
+
+___
+
+
+
+
+TBDF-Incoming Weekly Measurement Data
+
+
+# Update Data Structure Form - created at 2025-05-18 15:51
+	 Data Structure found from the search string:  `<class 'filter'>`
+
+# Update Data Structure
+
+## Data Structure Name 
+
+TBDF-Incoming Weekly Measurement Data
+
+## Description
+This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
+
+## Qualified Name
+DataStruct::TBDF-Incoming Weekly Measurement Data
+
+## Namespace
+
+
+## Version Identifier
+
+
+## Guid
+3eb5d206-6d3f-4b61-8f45-d7fbc05a870e
+
+
+
+WWT-Incoming Weekly Measurement Data
+
+
+# Update Data Structure Form - created at 2025-05-18 15:51
+	 Data Structure found from the search string:  `<class 'filter'>`
+
+# Update Data Structure
+
+## Data Structure Name 
+
+WWT-Incoming Weekly Measurement Data
+
+## Description
+A collection of data fields that form a data structure.
+
+## Qualified Name
+DataStruct::WWT-Incoming Weekly Measurement Data
+
+## Namespace
+
+
+## Version Identifier
+
+
+## Guid
+d3c0eb7f-476f-4649-a09c-f8ee39c0dfb9
+
+
+# Provenance
+
+* Results from processing file data_test.md on 2025-05-18 15:51

md_processing/dr_egeria_outbox/processed-2025-05-18 16:47-data_test.md

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+
+
+
+
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+# Create Data Specification
+
+## Data Specification
+
+
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+>woof
+##  Description
+>Meow -
+
+Principle data requirements for Teddy Bear Drop Foot Clinical Trial.
+
+
+
+
+
+___
+
+# Create Data Dictionary
+## Name
+Clinical Trial Data Dictionary
+
+## Description
+A data dictionary for clinical trial data elements.
+
+
+
+
+___
+
+___
+
+
+
+
+TBDF-Incoming Weekly Measurement Data
+
+# Update Data Structure
+
+## GUID
+3eb5d206-6d3f-4b61-8f45-d7fbc05a870e
+
+## Data Structure
+
+TBDF-Incoming Weekly Measurement Data
+
+## Description
+This describes the weekly measurement data for each patient for the Teddy Bear drop foot clinical trial
+
+## In Data Specification
+Data Specification for the Teddy Bear Drop Foot Clinical Trial
+
+
+## Qualified Name
+
+
+___
+
+WWT-Incoming Weekly Measurement Data
+
+# Update Data Structure
+
+## Qualified Name
+DataStruct::WWT-Incoming Weekly Measurement Data
+
+## GUID
+ae221834-a3a6-4f32-ac94-110dff761b49
+
+## Data Structure
+
+WWT-Incoming Weekly Measurement Data
+
+
+##  Description
+A collection of data fields that form a data structure.
+
+
+##  In Data Specification
+
+
+
+##  Qualified Name
+
+# Provenance
+
+* Results from processing file data_test.md on 2025-05-18 16:47