pyedger 0.1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyedger/__init__.py +106 -0
- pyedger/core.py +2202 -0
- pyedger-0.1.0.dist-info/METADATA +101 -0
- pyedger-0.1.0.dist-info/RECORD +7 -0
- pyedger-0.1.0.dist-info/WHEEL +5 -0
- pyedger-0.1.0.dist-info/licenses/LICENSE +7 -0
- pyedger-0.1.0.dist-info/top_level.txt +1 -0
pyedger/__init__.py
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"""Pure-Python subset of Bioconductor edgeR."""
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from .core import (
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DGEExact,
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DGEGLM,
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DGELRT,
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DGEList,
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TestResults,
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add_prior_count,
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ave_log_cpm,
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calc_norm_factors,
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cpm,
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decide_tests_dge,
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effective_lib_sizes,
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equalize_lib_sizes,
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estimate_common_disp,
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estimate_disp,
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estimate_glm_common_disp,
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estimate_glm_tagwise_disp,
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estimate_glm_trended_disp,
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estimate_tagwise_disp,
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exact_test,
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filter_by_expr,
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glm_fit,
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glm_lrt,
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glm_ql_fit,
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glm_qlf_test,
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glm_treat,
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pred_fc,
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top_tags,
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)
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calcNormFactors = calc_norm_factors
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effectiveLibSizes = effective_lib_sizes
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equalizeLibSizes = equalize_lib_sizes
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estimateCommonDisp = estimate_common_disp
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estimateTagwiseDisp = estimate_tagwise_disp
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estimateDisp = estimate_disp
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estimateGLMCommonDisp = estimate_glm_common_disp
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estimateGLMTagwiseDisp = estimate_glm_tagwise_disp
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estimateGLMTrendedDisp = estimate_glm_trended_disp
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exactTest = exact_test
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filterByExpr = filter_by_expr
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glmFit = glm_fit
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glmLRT = glm_lrt
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glmTreat = glm_treat
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glmQLFit = glm_ql_fit
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glmQLFTest = glm_qlf_test
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predFC = pred_fc
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addPriorCount = add_prior_count
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decideTestsDGE = decide_tests_dge
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decideTests = decide_tests_dge
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topTags = top_tags
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aveLogCPM = ave_log_cpm
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__all__ = [
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"DGEExact",
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"DGEGLM",
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"DGELRT",
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"DGEList",
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"TestResults",
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"add_prior_count",
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"addPriorCount",
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"ave_log_cpm",
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"aveLogCPM",
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"calc_norm_factors",
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"calcNormFactors",
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"effective_lib_sizes",
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"effectiveLibSizes",
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"equalize_lib_sizes",
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"equalizeLibSizes",
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"estimate_common_disp",
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"estimateCommonDisp",
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"estimate_tagwise_disp",
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"estimateTagwiseDisp",
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"estimate_disp",
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"estimateDisp",
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"estimate_glm_common_disp",
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"estimateGLMCommonDisp",
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"estimate_glm_tagwise_disp",
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"estimateGLMTagwiseDisp",
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"estimate_glm_trended_disp",
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"estimateGLMTrendedDisp",
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"exact_test",
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"exactTest",
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"filter_by_expr",
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"filterByExpr",
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"glm_fit",
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"glmFit",
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"glm_lrt",
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"glmLRT",
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"glm_treat",
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"glmTreat",
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"glm_ql_fit",
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"glmQLFit",
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"glm_qlf_test",
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"glmQLFTest",
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"pred_fc",
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"predFC",
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"top_tags",
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"topTags",
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"cpm",
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"decide_tests_dge",
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"decideTests",
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"decideTestsDGE",
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]
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